EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_PWKPhJ_G0020798 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc1
Alias: PABP|Pabp1|PabpI|Pabpl1|ePAB
Full Name: poly(A) binding protein%2C cytoplasmic 1
Gene Type: protein_coding
Species: Mus_musculus_pwkphj
Status: putative
Strand: Minus strand
Length: 14130 bases
Position: chr15:33531587-33545716
Accession: 1349722
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PWKPhJ_P0040147	PABP	PF00658.18	6.3e-32	1	1
MGP_PWKPhJ_P0040147	RRM_5	PF13893.6	4.3e-07	1	2
MGP_PWKPhJ_P0040147	RRM_5	PF13893.6	4.3e-07	2	2
MGP_PWKPhJ_P0040147	RRM_1	PF00076.22	3.2e-77	1	4
MGP_PWKPhJ_P0040147	RRM_1	PF00076.22	3.2e-77	2	4
MGP_PWKPhJ_P0040147	RRM_1	PF00076.22	3.2e-77	3	4
MGP_PWKPhJ_P0040147	RRM_1	PF00076.22	3.2e-77	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PWKPhJ_T0040148	-	632	-	-	- (aa)	-	-
MGP_PWKPhJ_T0040149	-	725	-	-	- (aa)	-	-
MGP_PWKPhJ_T0040152	-	2776	-	-	- (aa)	-	-
MGP_PWKPhJ_T0040151	-	1226	-	MGP_PWKPhJ_P0040151	255 (aa)	-	-
MGP_PWKPhJ_T0040150	-	866	-	-	- (aa)	-	-
MGP_PWKPhJ_T0040147	-	2534	XM_011245339	MGP_PWKPhJ_P0040147	573 (aa)	XP_011243641	P29341

Gene Model

Click here to download MGP_PWKPhJ_G0020798's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PWKPhJ_G0020798's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PWKPhJ_G0020798	Pabpc1	79	68.182	MGP_PWKPhJ_G0034702	Pabpc5	94	67.805
MGP_PWKPhJ_G0020798	Pabpc1	80	69.608	MGP_PWKPhJ_G0026090	Pabpc4l	97	69.277
MGP_PWKPhJ_G0020798	Pabpc1	58	33.784	MGP_PWKPhJ_G0034409	Rbmx	77	41.558
MGP_PWKPhJ_G0020798	Pabpc1	70	30.882	MGP_PWKPhJ_G0025058	Celf1	61	30.882
MGP_PWKPhJ_G0020798	Pabpc1	99	88.024	MGP_PWKPhJ_G0022132	Pabpc6	99	88.024
MGP_PWKPhJ_G0020798	Pabpc1	79	36.145	MGP_PWKPhJ_G0027434	Elavl4	88	36.145
MGP_PWKPhJ_G0020798	Pabpc1	56	39.189	MGP_PWKPhJ_G0034224	Rbm3	87	40.625
MGP_PWKPhJ_G0020798	Pabpc1	79	77.723	MGP_PWKPhJ_G0025746	Pabpc1l	99	53.651
MGP_PWKPhJ_G0020798	Pabpc1	78	36.145	MGP_PWKPhJ_G0033183	Elavl3	92	36.145
MGP_PWKPhJ_G0020798	Pabpc1	83	88.208	MGP_PWKPhJ_G0023321	Pabpc2	100	61.129
MGP_PWKPhJ_G0020798	Pabpc1	62	35.616	MGP_PWKPhJ_G0023160	Celf4	52	36.842
MGP_PWKPhJ_G0020798	Pabpc1	62	38.095	MGP_PWKPhJ_G0029778	Tia1	95	30.189
MGP_PWKPhJ_G0020798	Pabpc1	67	36.986	MGP_PWKPhJ_G0033610	Celf6	55	36.986
MGP_PWKPhJ_G0020798	Pabpc1	79	37.349	MGP_PWKPhJ_G0027303	Elavl2	89	37.349
MGP_PWKPhJ_G0020798	Pabpc1	62	35.135	MGP_PWKPhJ_G0016597	Cirbp	81	36.145