EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_PWKPhJ_G0022132 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc6
Alias: 4932702K14Rik|AI428050|Pabpc3
Full Name: poly(A) binding protein%2C cytoplasmic 6
Gene Type: protein_coding
Species: Mus_musculus_pwkphj
Status: putative
Strand: Minus strand
Length: 3192 bases
Position: chr17:6482811-6486002
Accession: 1914793
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PWKPhJ_P0044913	PABP	PF00658.18	1.4e-26	1	1
MGP_PWKPhJ_P0044913	RRM_5	PF13893.6	3.5e-07	1	1
MGP_PWKPhJ_P0044913	RRM_1	PF00076.22	1.9e-89	1	4
MGP_PWKPhJ_P0044913	RRM_1	PF00076.22	1.9e-89	2	4
MGP_PWKPhJ_P0044913	RRM_1	PF00076.22	1.9e-89	3	4
MGP_PWKPhJ_P0044913	RRM_1	PF00076.22	1.9e-89	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PWKPhJ_T0044913	-	3192	-	MGP_PWKPhJ_P0044913	640 (aa)	-	Q9D4E6

Gene Model

Click here to download MGP_PWKPhJ_G0022132's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PWKPhJ_G0022132's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PWKPhJ_G0022132	Pabpc6	97	57.052	MGP_PWKPhJ_G0025746	Pabpc1l	99	57.052
MGP_PWKPhJ_G0022132	Pabpc6	59	58.470	MGP_PWKPhJ_G0034702	Pabpc5	96	58.445
MGP_PWKPhJ_G0022132	Pabpc6	60	34.091	MGP_PWKPhJ_G0034096	Rbms3	77	33.708
MGP_PWKPhJ_G0022132	Pabpc6	62	36.145	MGP_PWKPhJ_G0033183	Elavl3	92	36.145
MGP_PWKPhJ_G0022132	Pabpc6	57	37.500	MGP_PWKPhJ_G0026435	Celf3	79	37.500
MGP_PWKPhJ_G0022132	Pabpc6	51	34.211	MGP_PWKPhJ_G0024279	Celf2	57	34.211
MGP_PWKPhJ_G0022132	Pabpc6	99	88.024	MGP_PWKPhJ_G0020798	Pabpc1	99	88.024
MGP_PWKPhJ_G0022132	Pabpc6	64	39.062	MGP_PWKPhJ_G0033610	Celf6	77	39.062
MGP_PWKPhJ_G0022132	Pabpc6	53	35.526	MGP_PWKPhJ_G0025058	Celf1	52	35.526
MGP_PWKPhJ_G0022132	Pabpc6	99	70.451	MGP_PWKPhJ_G0023321	Pabpc2	99	70.295
MGP_PWKPhJ_G0022132	Pabpc6	60	32.468	MGP_PWKPhJ_G0027434	Elavl4	88	32.468
MGP_PWKPhJ_G0022132	Pabpc6	58	64.497	MGP_PWKPhJ_G0026090	Pabpc4l	98	64.497
MGP_PWKPhJ_G0022132	Pabpc6	60	37.349	MGP_PWKPhJ_G0027303	Elavl2	90	37.349
MGP_PWKPhJ_G0022132	Pabpc6	62	36.842	MGP_PWKPhJ_G0023160	Celf4	62	36.842
MGP_PWKPhJ_G0022132	Pabpc6	58	36.905	MGP_PWKPhJ_G0029778	Tia1	96	36.905
MGP_PWKPhJ_G0022132	Pabpc6	58	34.667	MGP_PWKPhJ_G0028817	Rbm19	63	34.667