EuRBPDB

Description

Ensembl ID: MGP_PWKPhJ_G0022575 (Gene tree)
Gene ID: -
Gene Symbol: Lsm2
Alias: D17H6S56E-2|D17H6S56E2|Dmapl|Dmpkap|G7b|Sm-X5|Sm-X5GN|SmX5|snRNP
Full Name: LSM2 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Mus_musculus_pwkphj
Status: putative
Strand: Plus strand
Length: 4140 bases
Position: chr17:32101129-32105268
Accession: 90676
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PWKPhJ_P0046612	LSM	PF01423.22	1.1e-16	1	1
MGP_PWKPhJ_P0046615	LSM	PF01423.22	2.7e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PWKPhJ_T0046621	-	1063	-	-	- (aa)	-	-
MGP_PWKPhJ_T0046620	-	525	-	-	- (aa)	-	-
MGP_PWKPhJ_T0046616	-	687	-	-	- (aa)	-	-
MGP_PWKPhJ_T0046617	-	653	-	-	- (aa)	-	-
MGP_PWKPhJ_T0046614	-	368	-	-	- (aa)	-	-
MGP_PWKPhJ_T0046615	-	873	-	MGP_PWKPhJ_P0046615	131 (aa)	-	-
MGP_PWKPhJ_T0046612	-	840	-	MGP_PWKPhJ_P0046612	95 (aa)	-	-
MGP_PWKPhJ_T0046613	-	521	-	-	- (aa)	-	-
MGP_PWKPhJ_T0046611	-	1585	-	-	- (aa)	-	-
MGP_PWKPhJ_T0046618	-	870	-	MGP_PWKPhJ_P0046618	85 (aa)	-	-
MGP_PWKPhJ_T0046619	-	691	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PWKPhJ_G0022575	Lsm2	77	31.507	MGP_PWKPhJ_G0027620	Lsm10	75	31.507
MGP_PWKPhJ_G0022575	Lsm2	92	34.831	MGP_PWKPhJ_G0032440	Lsm4	70	35.644