EuRBPDB

Description

Ensembl ID: MGP_PWKPhJ_G0022604 (Gene tree)
Gene ID: -
Gene Symbol: Ddx39b
Alias: 0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh|Uap56
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
Gene Type: protein_coding
Species: Mus_musculus_pwkphj
Status: putative
Strand: Plus strand
Length: 11855 bases
Position: chr17:32380350-32392204
Accession: 99240
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PWKPhJ_P0046745	ResIII	PF04851.15	9.2e-08	1	1
MGP_PWKPhJ_P0046744	ResIII	PF04851.15	2.3e-07	1	1
MGP_PWKPhJ_P0046747	ResIII	PF04851.15	2.3e-07	1	1
MGP_PWKPhJ_P0046749	ResIII	PF04851.15	2.3e-07	1	1
MGP_PWKPhJ_P0046744	DEAD	PF00270.29	1.2e-38	1	1
MGP_PWKPhJ_P0046747	DEAD	PF00270.29	1.2e-38	1	1
MGP_PWKPhJ_P0046749	DEAD	PF00270.29	1.2e-38	1	1
MGP_PWKPhJ_P0046745	DEAD	PF00270.29	4.1e-34	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PWKPhJ_T0046744	-	1731	-	MGP_PWKPhJ_P0046744	428 (aa)	-	Q9Z1N5
MGP_PWKPhJ_T0046745	-	759	-	MGP_PWKPhJ_P0046745	148 (aa)	-	-
MGP_PWKPhJ_T0046746	-	1707	-	-	- (aa)	-	-
MGP_PWKPhJ_T0046747	-	2842	-	MGP_PWKPhJ_P0046747	428 (aa)	-	-
MGP_PWKPhJ_T0046748	-	741	-	-	- (aa)	-	-
MGP_PWKPhJ_T0046749	-	1762	-	MGP_PWKPhJ_P0046749	428 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PWKPhJ_G0022604	Ddx39b	99	37.415	MGP_PWKPhJ_G0018547	Eif4a3	89	36.247
MGP_PWKPhJ_G0022604	Ddx39b	99	36.667	MGP_PWKPhJ_G0032421	Ddx49	97	33.046
MGP_PWKPhJ_G0022604	Ddx39b	77	30.029	MGP_PWKPhJ_G0018382	Ddx5	65	30.029
MGP_PWKPhJ_G0022604	Ddx39b	99	31.016	MGP_PWKPhJ_G0030219	Gm5580	91	32.500
MGP_PWKPhJ_G0022604	Ddx39b	99	35.135	MGP_PWKPhJ_G0033245	Ddx25	82	32.020
MGP_PWKPhJ_G0022604	Ddx39b	99	36.424	MGP_PWKPhJ_G0025819	Ddx27	54	32.134
MGP_PWKPhJ_G0022604	Ddx39b	99	40.816	MGP_PWKPhJ_G0021677	Eif4a2	90	38.919
MGP_PWKPhJ_G0022604	Ddx39b	95	37.857	MGP_PWKPhJ_G0017628	Eif4a1	95	34.729
MGP_PWKPhJ_G0022604	Ddx39b	100	90.888	MGP_PWKPhJ_G0032559	Ddx39	100	90.888
MGP_PWKPhJ_G0022604	Ddx39b	99	31.792	MGP_PWKPhJ_G0016052	D1Pas1	57	30.105
MGP_PWKPhJ_G0022604	Ddx39b	99	37.838	MGP_PWKPhJ_G0032847	Ddx19b	73	33.459
MGP_PWKPhJ_G0022604	Ddx39b	99	36.486	MGP_PWKPhJ_G0030210	Ddx47	90	31.926
MGP_PWKPhJ_G0022604	Ddx39b	70	34.286	MGP_PWKPhJ_G0018674	Ddx1	54	36.471