EuRBPDB

Description

Ensembl ID: MGP_PWKPhJ_G0025673 (Gene tree)
Gene ID: -
Gene Symbol: Rbm39
Alias: 1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|Caper|Caper alpha|R75070|Rnpc2|caper
Full Name: RNA binding motif protein 39
Gene Type: protein_coding
Species: Mus_musculus_pwkphj
Status: putative
Strand: Minus strand
Length: 34411 bases
Position: chr2:153294642-153329052
Accession: 2157953
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PWKPhJ_P0058213	RRM_1	PF00076.22	1.3e-41	1	2
MGP_PWKPhJ_P0058213	RRM_1	PF00076.22	1.3e-41	2	2
MGP_PWKPhJ_P0058214	RRM_1	PF00076.22	1.7e-41	1	2
MGP_PWKPhJ_P0058214	RRM_1	PF00076.22	1.7e-41	2	2
MGP_PWKPhJ_P0058216	RRM_1	PF00076.22	1.7e-41	1	2
MGP_PWKPhJ_P0058216	RRM_1	PF00076.22	1.7e-41	2	2
MGP_PWKPhJ_P0058219	RRM_1	PF00076.22	2.3e-22	1	1
MGP_PWKPhJ_P0058220	RRM_1	PF00076.22	9.5e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PWKPhJ_T0058237	-	715	-	-	- (aa)	-	-
MGP_PWKPhJ_T0058236	-	1008	-	-	- (aa)	-	-
MGP_PWKPhJ_T0058235	-	699	-	MGP_PWKPhJ_P0058235	40 (aa)	-	-
MGP_PWKPhJ_T0058234	-	671	-	-	- (aa)	-	-
MGP_PWKPhJ_T0058233	-	667	-	MGP_PWKPhJ_P0058233	38 (aa)	-	-
MGP_PWKPhJ_T0058232	-	743	-	MGP_PWKPhJ_P0058232	40 (aa)	-	-
MGP_PWKPhJ_T0058231	-	585	-	MGP_PWKPhJ_P0058231	62 (aa)	-	-
MGP_PWKPhJ_T0058230	-	707	-	-	- (aa)	-	-
MGP_PWKPhJ_T0058213	-	2810	XM_006498832	MGP_PWKPhJ_P0058213	530 (aa)	XP_006498895	Q8VH51
MGP_PWKPhJ_T0058215	-	2744	-	MGP_PWKPhJ_P0058215	415 (aa)	-	-
MGP_PWKPhJ_T0058214	-	2580	-	MGP_PWKPhJ_P0058214	524 (aa)	-	-
MGP_PWKPhJ_T0058217	-	2127	-	MGP_PWKPhJ_P0058217	47 (aa)	-	-
MGP_PWKPhJ_T0058216	-	2711	-	MGP_PWKPhJ_P0058216	524 (aa)	-	-
MGP_PWKPhJ_T0058219	-	931	-	MGP_PWKPhJ_P0058219	310 (aa)	-	-
MGP_PWKPhJ_T0058218	-	2120	-	MGP_PWKPhJ_P0058218	40 (aa)	-	-
MGP_PWKPhJ_T0058228	-	707	-	MGP_PWKPhJ_P0058228	40 (aa)	-	-
MGP_PWKPhJ_T0058229	-	593	-	MGP_PWKPhJ_P0058229	39 (aa)	-	-
MGP_PWKPhJ_T0058224	-	754	-	MGP_PWKPhJ_P0058224	156 (aa)	-	-
MGP_PWKPhJ_T0058225	-	497	-	-	- (aa)	-	-
MGP_PWKPhJ_T0058226	-	711	-	-	- (aa)	-	-
MGP_PWKPhJ_T0058227	-	685	-	-	- (aa)	-	-
MGP_PWKPhJ_T0058220	-	1090	-	MGP_PWKPhJ_P0058220	273 (aa)	-	-
MGP_PWKPhJ_T0058221	-	695	-	-	- (aa)	-	-
MGP_PWKPhJ_T0058222	-	546	-	-	- (aa)	-	-
MGP_PWKPhJ_T0058223	-	1447	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PWKPhJ_G0025673	Rbm39	52	34.483	MGP_PWKPhJ_G0016603	-	94	34.483