EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_PWKPhJ_G0025746 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc1l
Alias: 1810053B01Rik|Epab|ePAB
Full Name: poly(A) binding protein%2C cytoplasmic 1-like
Gene Type: protein_coding
Species: Mus_musculus_pwkphj
Status: putative
Strand: Plus strand
Length: 27254 bases
Position: chr2:161289209-161316462
Accession: 1922908
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PWKPhJ_P0058585	PABP	PF00658.18	1.9e-23	1	1
MGP_PWKPhJ_P0058585	RRM_5	PF13893.6	3.4e-17	1	3
MGP_PWKPhJ_P0058585	RRM_5	PF13893.6	3.4e-17	2	3
MGP_PWKPhJ_P0058585	RRM_5	PF13893.6	3.4e-17	3	3
MGP_PWKPhJ_P0058585	RRM_1	PF00076.22	3.2e-90	1	4
MGP_PWKPhJ_P0058585	RRM_1	PF00076.22	3.2e-90	2	4
MGP_PWKPhJ_P0058585	RRM_1	PF00076.22	3.2e-90	3	4
MGP_PWKPhJ_P0058585	RRM_1	PF00076.22	3.2e-90	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PWKPhJ_T0058589	-	322	-	-	- (aa)	-	-
MGP_PWKPhJ_T0058588	-	754	-	-	- (aa)	-	-
MGP_PWKPhJ_T0058585	-	2358	XM_006499825	MGP_PWKPhJ_P0058585	607 (aa)	XP_006499888	A2A5N3
MGP_PWKPhJ_T0058587	-	438	-	-	- (aa)	-	-
MGP_PWKPhJ_T0058586	-	617	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_PWKPhJ_G0025746's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PWKPhJ_G0025746's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PWKPhJ_G0025746	Pabpc1l	53	34.884	MGP_PWKPhJ_G0024279	Celf2	57	34.884
MGP_PWKPhJ_G0025746	Pabpc1l	60	35.870	MGP_PWKPhJ_G0016671	Celf5	63	35.870
MGP_PWKPhJ_G0025746	Pabpc1l	64	34.940	MGP_PWKPhJ_G0027303	Elavl2	92	34.940
MGP_PWKPhJ_G0025746	Pabpc1l	99	53.651	MGP_PWKPhJ_G0020798	Pabpc1	79	77.723
MGP_PWKPhJ_G0025746	Pabpc1l	57	34.247	MGP_PWKPhJ_G0026435	Celf3	67	32.857
MGP_PWKPhJ_G0025746	Pabpc1l	60	37.097	MGP_PWKPhJ_G0028817	Rbm19	72	37.705
MGP_PWKPhJ_G0025746	Pabpc1l	99	57.052	MGP_PWKPhJ_G0022132	Pabpc6	97	57.052
MGP_PWKPhJ_G0025746	Pabpc1l	64	57.022	MGP_PWKPhJ_G0034702	Pabpc5	96	56.944
MGP_PWKPhJ_G0025746	Pabpc1l	63	38.889	MGP_PWKPhJ_G0033183	Elavl3	59	31.098
MGP_PWKPhJ_G0025746	Pabpc1l	99	57.325	MGP_PWKPhJ_G0023321	Pabpc2	98	57.325
MGP_PWKPhJ_G0025746	Pabpc1l	59	60.736	MGP_PWKPhJ_G0026090	Pabpc4l	95	60.736
MGP_PWKPhJ_G0025746	Pabpc1l	62	33.735	MGP_PWKPhJ_G0027434	Elavl4	89	33.735
MGP_PWKPhJ_G0025746	Pabpc1l	53	39.759	MGP_PWKPhJ_G0016597	Cirbp	91	39.759
MGP_PWKPhJ_G0025746	Pabpc1l	59	31.447	MGP_PWKPhJ_G0034096	Rbms3	77	31.447
MGP_PWKPhJ_G0025746	Pabpc1l	56	30.247	MGP_PWKPhJ_G0019646	Hnrnpa0	50	30.968
MGP_PWKPhJ_G0025746	Pabpc1l	59	38.095	MGP_PWKPhJ_G0029778	Tia1	87	38.095