EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_PWKPhJ_G0026090 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc4l
Alias: C330050A14Rik|EG241989
Full Name: poly(A) binding protein%2C cytoplasmic 4-like
Gene Type: protein_coding
Species: Mus_musculus_pwkphj
Status: putative
Strand: Minus strand
Length: 6052 bases
Position: chr3:42611651-42617702
Accession: 3643087
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PWKPhJ_P0060200	RRM_5	PF13893.6	1.6e-13	1	3
MGP_PWKPhJ_P0060200	RRM_5	PF13893.6	1.6e-13	2	3
MGP_PWKPhJ_P0060200	RRM_5	PF13893.6	1.6e-13	3	3
MGP_PWKPhJ_P0060201	RRM_5	PF13893.6	1.6e-13	1	3
MGP_PWKPhJ_P0060201	RRM_5	PF13893.6	1.6e-13	2	3
MGP_PWKPhJ_P0060201	RRM_5	PF13893.6	1.6e-13	3	3
MGP_PWKPhJ_P0060200	RRM_1	PF00076.22	4.8e-83	1	4
MGP_PWKPhJ_P0060200	RRM_1	PF00076.22	4.8e-83	2	4
MGP_PWKPhJ_P0060200	RRM_1	PF00076.22	4.8e-83	3	4
MGP_PWKPhJ_P0060200	RRM_1	PF00076.22	4.8e-83	4	4
MGP_PWKPhJ_P0060201	RRM_1	PF00076.22	4.8e-83	1	4
MGP_PWKPhJ_P0060201	RRM_1	PF00076.22	4.8e-83	2	4
MGP_PWKPhJ_P0060201	RRM_1	PF00076.22	4.8e-83	3	4
MGP_PWKPhJ_P0060201	RRM_1	PF00076.22	4.8e-83	4	4
MGP_PWKPhJ_P0060202	RRM_1	PF00076.22	1.9e-40	1	2
MGP_PWKPhJ_P0060202	RRM_1	PF00076.22	1.9e-40	2	2
MGP_PWKPhJ_P0060203	RRM_1	PF00076.22	2e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PWKPhJ_T0060201	-	5255	-	MGP_PWKPhJ_P0060201	370 (aa)	-	-
MGP_PWKPhJ_T0060200	-	5220	XM_006500774	MGP_PWKPhJ_P0060200	370 (aa)	XP_006500837	A0A0A6YWT2
MGP_PWKPhJ_T0060203	-	467	-	MGP_PWKPhJ_P0060203	50 (aa)	-	-
MGP_PWKPhJ_T0060202	-	723	-	MGP_PWKPhJ_P0060202	172 (aa)	-	-

Gene Model

Click here to download MGP_PWKPhJ_G0026090's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PWKPhJ_G0026090's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PWKPhJ_G0026090	Pabpc4l	95	68.098	MGP_PWKPhJ_G0023321	Pabpc2	57	68.098
MGP_PWKPhJ_G0026090	Pabpc4l	65	34.211	MGP_PWKPhJ_G0025058	Celf1	57	37.879
MGP_PWKPhJ_G0026090	Pabpc4l	96	30.065	MGP_PWKPhJ_G0027434	Elavl4	70	35.484
MGP_PWKPhJ_G0026090	Pabpc4l	97	69.277	MGP_PWKPhJ_G0020798	Pabpc1	80	69.608
MGP_PWKPhJ_G0026090	Pabpc4l	97	57.865	MGP_PWKPhJ_G0034702	Pabpc5	96	57.967
MGP_PWKPhJ_G0026090	Pabpc4l	83	34.286	MGP_PWKPhJ_G0034224	Rbm3	90	35.385
MGP_PWKPhJ_G0026090	Pabpc4l	77	31.618	MGP_PWKPhJ_G0031816	Tial1	99	31.618
MGP_PWKPhJ_G0026090	Pabpc4l	96	34.940	MGP_PWKPhJ_G0027303	Elavl2	89	34.940
MGP_PWKPhJ_G0026090	Pabpc4l	95	30.539	MGP_PWKPhJ_G0029778	Tia1	95	30.000
MGP_PWKPhJ_G0026090	Pabpc4l	95	60.736	MGP_PWKPhJ_G0025746	Pabpc1l	59	60.736
MGP_PWKPhJ_G0026090	Pabpc4l	89	31.875	MGP_PWKPhJ_G0027718	Trnau1ap	88	34.211
MGP_PWKPhJ_G0026090	Pabpc4l	96	36.145	MGP_PWKPhJ_G0033183	Elavl3	90	36.145
MGP_PWKPhJ_G0026090	Pabpc4l	98	64.497	MGP_PWKPhJ_G0022132	Pabpc6	58	64.497