EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_PWKPhJ_G0027964 (Gene tree)
Gene ID: -
Gene Symbol: Tardbp
Alias: 1190002A23Rik|C85084|TARDBP|TDP-43|Tdp43
Full Name: TAR DNA binding protein
Gene Type: protein_coding
Species: Mus_musculus_pwkphj
Status: putative
Strand: Minus strand
Length: 16289 bases
Position: chr4:142142947-142159235
Accession: 2387629
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PWKPhJ_P0068891	RRM_1	PF00076.22	1.1e-26	1	2
MGP_PWKPhJ_P0068891	RRM_1	PF00076.22	1.1e-26	2	2
MGP_PWKPhJ_P0068878	RRM_1	PF00076.22	3.9e-26	1	2
MGP_PWKPhJ_P0068878	RRM_1	PF00076.22	3.9e-26	2	2
MGP_PWKPhJ_P0068890	RRM_1	PF00076.22	3.9e-26	1	2
MGP_PWKPhJ_P0068890	RRM_1	PF00076.22	3.9e-26	2	2
MGP_PWKPhJ_P0068877	RRM_1	PF00076.22	4.1e-26	1	2
MGP_PWKPhJ_P0068877	RRM_1	PF00076.22	4.1e-26	2	2
MGP_PWKPhJ_P0068889	RRM_1	PF00076.22	4.1e-26	1	2
MGP_PWKPhJ_P0068889	RRM_1	PF00076.22	4.1e-26	2	2
MGP_PWKPhJ_P0068887	RRM_1	PF00076.22	1.4e-25	1	2
MGP_PWKPhJ_P0068887	RRM_1	PF00076.22	1.4e-25	2	2
MGP_PWKPhJ_P0068888	RRM_1	PF00076.22	4.1e-15	1	1
MGP_PWKPhJ_P0068892	RRM_1	PF00076.22	5e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PWKPhJ_T0068887	-	1342	-	MGP_PWKPhJ_P0068887	414 (aa)	-	-
MGP_PWKPhJ_T0068885	-	1044	-	MGP_PWKPhJ_P0068885	277 (aa)	-	-
MGP_PWKPhJ_T0068878	-	6097	-	MGP_PWKPhJ_P0068878	280 (aa)	-	-
MGP_PWKPhJ_T0068879	-	1633	-	MGP_PWKPhJ_P0068879	280 (aa)	-	-
MGP_PWKPhJ_T0068883	-	1866	-	MGP_PWKPhJ_P0068883	280 (aa)	-	-
MGP_PWKPhJ_T0068882	-	629	-	-	- (aa)	-	-
MGP_PWKPhJ_T0068881	-	529	-	MGP_PWKPhJ_P0068881	98 (aa)	-	-
MGP_PWKPhJ_T0068880	-	731	-	-	- (aa)	-	-
MGP_PWKPhJ_T0068886	-	1169	-	MGP_PWKPhJ_P0068886	84 (aa)	-	-
MGP_PWKPhJ_T0068893	-	370	-	-	- (aa)	-	-
MGP_PWKPhJ_T0068877	-	6115	XM_011250237	MGP_PWKPhJ_P0068877	286 (aa)	XP_011248539	Q921F2
MGP_PWKPhJ_T0068889	-	859	-	MGP_PWKPhJ_P0068889	286 (aa)	-	-
MGP_PWKPhJ_T0068888	-	818	-	MGP_PWKPhJ_P0068888	243 (aa)	-	-
MGP_PWKPhJ_T0068892	-	740	-	MGP_PWKPhJ_P0068892	149 (aa)	-	-
MGP_PWKPhJ_T0068884	-	601	-	MGP_PWKPhJ_P0068884	157 (aa)	-	-
MGP_PWKPhJ_T0068890	-	841	-	MGP_PWKPhJ_P0068890	280 (aa)	-	-
MGP_PWKPhJ_T0068891	-	579	-	MGP_PWKPhJ_P0068891	192 (aa)	-	-

Gene Model

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Protein-Protein Interaction (PPI)

Clik here to download MGP_PWKPhJ_G0027964's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PWKPhJ_G0027964	Tardbp	79	34.351	MGP_PWKPhJ_G0018004	Msi2	100	35.398
MGP_PWKPhJ_G0027964	Tardbp	80	38.194	MGP_PWKPhJ_G0028608	Hnrnpd	75	51.389
MGP_PWKPhJ_G0027964	Tardbp	98	31.818	MGP_PWKPhJ_G0016603	-	89	35.065
MGP_PWKPhJ_G0027964	Tardbp	82	31.098	MGP_PWKPhJ_G0028610	Hnrnpdl	61	30.000
MGP_PWKPhJ_G0027964	Tardbp	82	34.021	MGP_PWKPhJ_G0028786	Msi1	62	34.021
MGP_PWKPhJ_G0027964	Tardbp	92	34.437	MGP_PWKPhJ_G0017360	Hnrnpab	79	32.906