EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_PWKPhJ_G0028608 (Gene tree)
Gene ID: -
Gene Symbol: Hnrnpd
Alias: Auf1|Hnrpd
Full Name: heterogeneous nuclear ribonucleoprotein D
Gene Type: protein_coding
Species: Mus_musculus_pwkphj
Status: putative
Strand: Minus strand
Length: 23353 bases
Position: chr5:96269127-96292479
Accession: 101947
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PWKPhJ_P0072447	CBFNT	PF08143.11	1.4e-11	1	1
MGP_PWKPhJ_P0072455	CBFNT	PF08143.11	5.8e-08	1	1
MGP_PWKPhJ_P0072450	CBFNT	PF08143.11	4.3e-07	1	1
MGP_PWKPhJ_P0072449	CBFNT	PF08143.11	5.7e-07	1	1
MGP_PWKPhJ_P0072446	CBFNT	PF08143.11	7.1e-06	1	1
MGP_PWKPhJ_P0072455	RRM_1	PF00076.22	3.8e-36	1	2
MGP_PWKPhJ_P0072455	RRM_1	PF00076.22	3.8e-36	2	2
MGP_PWKPhJ_P0072450	RRM_1	PF00076.22	6.9e-36	1	2
MGP_PWKPhJ_P0072450	RRM_1	PF00076.22	6.9e-36	2	2
MGP_PWKPhJ_P0072447	RRM_1	PF00076.22	9e-36	1	2
MGP_PWKPhJ_P0072447	RRM_1	PF00076.22	9e-36	2	2
MGP_PWKPhJ_P0072449	RRM_1	PF00076.22	1.1e-35	1	2
MGP_PWKPhJ_P0072449	RRM_1	PF00076.22	1.1e-35	2	2
MGP_PWKPhJ_P0072446	RRM_1	PF00076.22	1.3e-35	1	2
MGP_PWKPhJ_P0072446	RRM_1	PF00076.22	1.3e-35	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PWKPhJ_T0072454	-	1083	-	MGP_PWKPhJ_P0072454	79 (aa)	-	-
MGP_PWKPhJ_T0072448	-	918	-	MGP_PWKPhJ_P0072448	227 (aa)	-	-
MGP_PWKPhJ_T0072449	-	1649	-	MGP_PWKPhJ_P0072449	329 (aa)	-	-
MGP_PWKPhJ_T0072456	-	425	-	-	- (aa)	-	-
MGP_PWKPhJ_T0072446	-	6762	XM_006534735	MGP_PWKPhJ_P0072446	348 (aa)	XP_006534798	Q60668
MGP_PWKPhJ_T0072447	-	1998	-	MGP_PWKPhJ_P0072447	305 (aa)	-	-
MGP_PWKPhJ_T0072453	-	699	-	MGP_PWKPhJ_P0072453	131 (aa)	-	-
MGP_PWKPhJ_T0072452	-	737	-	MGP_PWKPhJ_P0072452	150 (aa)	-	-
MGP_PWKPhJ_T0072451	-	1117	-	MGP_PWKPhJ_P0072451	215 (aa)	-	-
MGP_PWKPhJ_T0072450	-	1516	-	MGP_PWKPhJ_P0072450	280 (aa)	-	-
MGP_PWKPhJ_T0072455	-	672	-	MGP_PWKPhJ_P0072455	223 (aa)	-	-

Gene Model

Click here to download MGP_PWKPhJ_G0028608's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PWKPhJ_G0028608's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PWKPhJ_G0028608	Hnrnpd	87	47.120	MGP_PWKPhJ_G0018004	Msi2	100	53.982
MGP_PWKPhJ_G0028608	Hnrnpd	89	44.162	MGP_PWKPhJ_G0028786	Msi1	59	50.000
MGP_PWKPhJ_G0028608	Hnrnpd	77	36.257	MGP_PWKPhJ_G0019646	Hnrnpa0	73	39.474
MGP_PWKPhJ_G0028608	Hnrnpd	91	37.668	MGP_PWKPhJ_G0016603	-	99	43.307
MGP_PWKPhJ_G0028608	Hnrnpd	78	39.181	MGP_PWKPhJ_G0021434	Hnrnpa1	61	34.914
MGP_PWKPhJ_G0028608	Hnrnpd	65	40.000	MGP_PWKPhJ_G0034409	Rbmx	85	43.750
MGP_PWKPhJ_G0028608	Hnrnpd	97	66.452	MGP_PWKPhJ_G0028610	Hnrnpdl	89	75.194
MGP_PWKPhJ_G0028608	Hnrnpd	64	37.931	MGP_PWKPhJ_G0034224	Rbm3	78	37.931
MGP_PWKPhJ_G0028608	Hnrnpd	75	51.389	MGP_PWKPhJ_G0027964	Tardbp	80	38.194
MGP_PWKPhJ_G0028608	Hnrnpd	68	37.931	MGP_PWKPhJ_G0016597	Cirbp	86	37.931
MGP_PWKPhJ_G0028608	Hnrnpd	97	70.616	MGP_PWKPhJ_G0017360	Hnrnpab	82	78.400
MGP_PWKPhJ_G0028608	Hnrnpd	69	35.294	MGP_PWKPhJ_G0015173	Boll	61	31.818