EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_PWKPhJ_G0028786 (Gene tree)
Gene ID: -
Gene Symbol: Msi1
Alias: Msi1|Msi1h|Musahi1|m-Msi-1
Full Name: musashi RNA-binding protein 1
Gene Type: protein_coding
Species: Mus_musculus_pwkphj
Status: putative
Strand: Plus strand
Length: 26357 bases
Position: chr5:112331924-112358280
Accession: 107376
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PWKPhJ_P0073335	RRM_1	PF00076.22	7e-33	1	2
MGP_PWKPhJ_P0073335	RRM_1	PF00076.22	7e-33	2	2
MGP_PWKPhJ_P0073336	RRM_1	PF00076.22	1.6e-28	1	2
MGP_PWKPhJ_P0073336	RRM_1	PF00076.22	1.6e-28	2	2
MGP_PWKPhJ_P0073340	RRM_1	PF00076.22	1.2e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PWKPhJ_T0073339	-	581	-	-	- (aa)	-	-
MGP_PWKPhJ_T0073338	-	806	-	-	- (aa)	-	-
MGP_PWKPhJ_T0073335	-	3108	-	MGP_PWKPhJ_P0073335	362 (aa)	-	-
MGP_PWKPhJ_T0073334	-	2627	-	-	- (aa)	-	-
MGP_PWKPhJ_T0073337	-	367	-	-	- (aa)	-	-
MGP_PWKPhJ_T0073336	-	807	-	MGP_PWKPhJ_P0073336	268 (aa)	-	-
MGP_PWKPhJ_T0073340	-	726	-	MGP_PWKPhJ_P0073340	196 (aa)	-	-
MGP_PWKPhJ_T0073341	-	599	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_PWKPhJ_G0028786's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PWKPhJ_G0028786's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PWKPhJ_G0028786	Msi1	59	50.000	MGP_PWKPhJ_G0028608	Hnrnpd	89	44.162
MGP_PWKPhJ_G0028786	Msi1	62	34.021	MGP_PWKPhJ_G0027964	Tardbp	82	34.021
MGP_PWKPhJ_G0028786	Msi1	51	38.983	MGP_PWKPhJ_G0016597	Cirbp	87	40.351
MGP_PWKPhJ_G0028786	Msi1	58	48.052	MGP_PWKPhJ_G0017360	Hnrnpab	79	40.800
MGP_PWKPhJ_G0028786	Msi1	57	42.949	MGP_PWKPhJ_G0019646	Hnrnpa0	60	43.646
MGP_PWKPhJ_G0028786	Msi1	90	42.308	MGP_PWKPhJ_G0016603	-	98	44.311
MGP_PWKPhJ_G0028786	Msi1	58	48.052	MGP_PWKPhJ_G0028610	Hnrnpdl	75	39.676
MGP_PWKPhJ_G0028786	Msi1	61	51.064	MGP_PWKPhJ_G0025865	Rbm38	66	46.809
MGP_PWKPhJ_G0028786	Msi1	99	75.665	MGP_PWKPhJ_G0018004	Msi2	100	90.323