EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_PWKPhJ_G0028914 (Gene tree)
Gene ID: -
Gene Symbol: Snrnp35
Alias: 6330548G22Rik|U1snrnpbp
Full Name: small nuclear ribonucleoprotein 35 (U11/U12)
Gene Type: protein_coding
Species: Mus_musculus_pwkphj
Status: putative
Strand: Plus strand
Length: 8157 bases
Position: chr5:121800487-121808643
Accession: 1923417
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PWKPhJ_P0074100	RRM_1	PF00076.22	1.1e-16	1	1
MGP_PWKPhJ_P0074099	RRM_1	PF00076.22	1.3e-16	1	1
MGP_PWKPhJ_P0074101	RRM_1	PF00076.22	1.3e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PWKPhJ_T0074101	-	1179	-	MGP_PWKPhJ_P0074101	244 (aa)	-	-
MGP_PWKPhJ_T0074100	-	449	-	MGP_PWKPhJ_P0074100	121 (aa)	-	-
MGP_PWKPhJ_T0074099	-	1113	XM_006530494	MGP_PWKPhJ_P0074099	244 (aa)	XP_006530557	Q9D384

Gene Model

Click here to download MGP_PWKPhJ_G0028914's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PWKPhJ_G0028914's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PWKPhJ_G0028914	Snrnp35	60	34.211	MGP_PWKPhJ_G0026508	Rbm8a	70	30.000
MGP_PWKPhJ_G0028914	Snrnp35	64	48.718	MGP_PWKPhJ_G0030975	Snrnp70	70	46.667
MGP_PWKPhJ_G0028914	Snrnp35	59	33.803	MGP_PWKPhJ_G0027434	Elavl4	61	32.530
MGP_PWKPhJ_G0028914	Snrnp35	60	37.500	MGP_PWKPhJ_G0027303	Elavl2	67	35.714
MGP_PWKPhJ_G0028914	Snrnp35	55	36.364	MGP_PWKPhJ_G0034409	Rbmx	71	35.616
MGP_PWKPhJ_G0028914	Snrnp35	55	34.848	MGP_PWKPhJ_G0034224	Rbm3	73	33.333