EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_PWKPhJ_G0029177 (Gene tree)
Gene ID: -
Gene Symbol: Cpsf4
Alias: 30kDa|C79664|Cpsf30
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Mus_musculus_pwkphj
Status: putative
Strand: Plus strand
Length: 14973 bases
Position: chr5:142990567-143005539
Accession: 1861602
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PWKPhJ_P0075471	zf-CCCH	PF00642.24	1.1e-20	1	2
MGP_PWKPhJ_P0075471	zf-CCCH	PF00642.24	1.1e-20	2	2
MGP_PWKPhJ_P0075466	zf-CCCH	PF00642.24	3.1e-20	1	2
MGP_PWKPhJ_P0075466	zf-CCCH	PF00642.24	3.1e-20	2	2
MGP_PWKPhJ_P0075468	zf-CCCH	PF00642.24	3.2e-20	1	2
MGP_PWKPhJ_P0075468	zf-CCCH	PF00642.24	3.2e-20	2	2
MGP_PWKPhJ_P0075469	zf-CCCH	PF00642.24	6e-20	1	2
MGP_PWKPhJ_P0075469	zf-CCCH	PF00642.24	6e-20	2	2
MGP_PWKPhJ_P0075467	zf-CCCH	PF00642.24	2.4e-15	1	2
MGP_PWKPhJ_P0075467	zf-CCCH	PF00642.24	2.4e-15	2	2
MGP_PWKPhJ_P0075467	zf-CCHC	PF00098.23	5.6e-06	1	1
MGP_PWKPhJ_P0075466	zf-CCHC	PF00098.23	6.8e-06	1	1
MGP_PWKPhJ_P0075468	zf-CCHC	PF00098.23	6.8e-06	1	1
MGP_PWKPhJ_P0075469	zf-CCHC	PF00098.23	7.7e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PWKPhJ_T0075470	-	1207	-	MGP_PWKPhJ_P0075470	62 (aa)	-	-
MGP_PWKPhJ_T0075471	-	838	-	MGP_PWKPhJ_P0075471	207 (aa)	-	-
MGP_PWKPhJ_T0075472	-	2973	-	-	- (aa)	-	-
MGP_PWKPhJ_T0075467	-	1600	-	MGP_PWKPhJ_P0075467	211 (aa)	-	-
MGP_PWKPhJ_T0075466	-	1707	XM_006504845	MGP_PWKPhJ_P0075466	243 (aa)	XP_006504908	Q8BQZ5
MGP_PWKPhJ_T0075469	-	1750	-	MGP_PWKPhJ_P0075469	269 (aa)	-	-
MGP_PWKPhJ_T0075468	-	1388	-	MGP_PWKPhJ_P0075468	244 (aa)	-	-

Gene Model

Click here to download MGP_PWKPhJ_G0029177's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PWKPhJ_G0029177's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PWKPhJ_G0029177	Cpsf4	86	52.358	MGP_PWKPhJ_G0018423	Cpsf4l	82	62.400