EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_PWKPhJ_G0029639 (Gene tree)
Gene ID: -
Gene Symbol: Prdm5
Alias: 4432417F03Rik|6530401I24Rik|AI197291|E130112L17Rik|PFM2
Full Name: PR domain containing 5
Gene Type: protein_coding
Species: Mus_musculus_pwkphj
Status: putative
Strand: Plus strand
Length: 162307 bases
Position: chr6:61679044-61841350
Accession: 1918029
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PWKPhJ_P0077527	zf-C2H2	PF00096.26	5.6e-59	1	9
MGP_PWKPhJ_P0077527	zf-C2H2	PF00096.26	5.6e-59	2	9
MGP_PWKPhJ_P0077527	zf-C2H2	PF00096.26	5.6e-59	3	9
MGP_PWKPhJ_P0077527	zf-C2H2	PF00096.26	5.6e-59	4	9
MGP_PWKPhJ_P0077527	zf-C2H2	PF00096.26	5.6e-59	5	9
MGP_PWKPhJ_P0077527	zf-C2H2	PF00096.26	5.6e-59	6	9
MGP_PWKPhJ_P0077527	zf-C2H2	PF00096.26	5.6e-59	7	9
MGP_PWKPhJ_P0077527	zf-C2H2	PF00096.26	5.6e-59	8	9
MGP_PWKPhJ_P0077527	zf-C2H2	PF00096.26	5.6e-59	9	9
MGP_PWKPhJ_P0077522	zf-C2H2	PF00096.26	1e-58	1	9
MGP_PWKPhJ_P0077522	zf-C2H2	PF00096.26	1e-58	2	9
MGP_PWKPhJ_P0077522	zf-C2H2	PF00096.26	1e-58	3	9
MGP_PWKPhJ_P0077522	zf-C2H2	PF00096.26	1e-58	4	9
MGP_PWKPhJ_P0077522	zf-C2H2	PF00096.26	1e-58	5	9
MGP_PWKPhJ_P0077522	zf-C2H2	PF00096.26	1e-58	6	9
MGP_PWKPhJ_P0077522	zf-C2H2	PF00096.26	1e-58	7	9
MGP_PWKPhJ_P0077522	zf-C2H2	PF00096.26	1e-58	8	9
MGP_PWKPhJ_P0077522	zf-C2H2	PF00096.26	1e-58	9	9
MGP_PWKPhJ_P0077525	zf-C2H2	PF00096.26	1.1e-48	1	9
MGP_PWKPhJ_P0077525	zf-C2H2	PF00096.26	1.1e-48	2	9
MGP_PWKPhJ_P0077525	zf-C2H2	PF00096.26	1.1e-48	3	9
MGP_PWKPhJ_P0077525	zf-C2H2	PF00096.26	1.1e-48	4	9
MGP_PWKPhJ_P0077525	zf-C2H2	PF00096.26	1.1e-48	5	9
MGP_PWKPhJ_P0077525	zf-C2H2	PF00096.26	1.1e-48	6	9
MGP_PWKPhJ_P0077525	zf-C2H2	PF00096.26	1.1e-48	7	9
MGP_PWKPhJ_P0077525	zf-C2H2	PF00096.26	1.1e-48	8	9
MGP_PWKPhJ_P0077525	zf-C2H2	PF00096.26	1.1e-48	9	9
MGP_PWKPhJ_P0077524	zf-C2H2	PF00096.26	8.3e-27	1	5
MGP_PWKPhJ_P0077524	zf-C2H2	PF00096.26	8.3e-27	2	5
MGP_PWKPhJ_P0077524	zf-C2H2	PF00096.26	8.3e-27	3	5
MGP_PWKPhJ_P0077524	zf-C2H2	PF00096.26	8.3e-27	4	5
MGP_PWKPhJ_P0077524	zf-C2H2	PF00096.26	8.3e-27	5	5
MGP_PWKPhJ_P0077527	zf-met	PF12874.7	1.5e-20	1	3
MGP_PWKPhJ_P0077527	zf-met	PF12874.7	1.5e-20	2	3
MGP_PWKPhJ_P0077527	zf-met	PF12874.7	1.5e-20	3	3
MGP_PWKPhJ_P0077522	zf-met	PF12874.7	2.6e-20	1	3
MGP_PWKPhJ_P0077522	zf-met	PF12874.7	2.6e-20	2	3
MGP_PWKPhJ_P0077522	zf-met	PF12874.7	2.6e-20	3	3
MGP_PWKPhJ_P0077525	zf-met	PF12874.7	9e-17	1	3
MGP_PWKPhJ_P0077525	zf-met	PF12874.7	9e-17	2	3
MGP_PWKPhJ_P0077525	zf-met	PF12874.7	9e-17	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PWKPhJ_T0077524	-	984	-	MGP_PWKPhJ_P0077524	221 (aa)	-	-
MGP_PWKPhJ_T0077525	-	1488	-	MGP_PWKPhJ_P0077525	415 (aa)	-	-
MGP_PWKPhJ_T0077526	-	4145	-	-	- (aa)	-	-
MGP_PWKPhJ_T0077527	-	1737	-	MGP_PWKPhJ_P0077527	578 (aa)	-	-
MGP_PWKPhJ_T0077522	-	2152	XM_006506600	MGP_PWKPhJ_P0077522	598 (aa)	XP_006506663	Q9CXE0
MGP_PWKPhJ_T0077523	-	1733	-	-	- (aa)	-	-
MGP_PWKPhJ_T0077528	-	1918	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_PWKPhJ_G0029639's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PWKPhJ_G0029639's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PWKPhJ_G0029639	Prdm5	70	41.379	MGP_PWKPhJ_G0030371	Zfp865	78	32.895
MGP_PWKPhJ_G0029639	Prdm5	78	38.571	MGP_PWKPhJ_G0017346	Zfp454	86	38.571
MGP_PWKPhJ_G0029639	Prdm5	76	49.451	MGP_PWKPhJ_G0033128	Zfp26	78	42.231
MGP_PWKPhJ_G0029639	Prdm5	69	47.857	MGP_PWKPhJ_G0030585	Zfp112	68	39.711
MGP_PWKPhJ_G0029639	Prdm5	73	44.355	MGP_PWKPhJ_G0030587	-	83	44.355
MGP_PWKPhJ_G0029639	Prdm5	73	44.286	MGP_PWKPhJ_G0030586	Zfp235	68	38.924
MGP_PWKPhJ_G0029639	Prdm5	67	46.667	MGP_PWKPhJ_G0030622	Zfp574	85	30.051
MGP_PWKPhJ_G0029639	Prdm5	78	39.906	MGP_PWKPhJ_G0032485	Zfp709	90	39.906
MGP_PWKPhJ_G0029639	Prdm5	74	43.846	MGP_PWKPhJ_G0028669	Gfi1	99	45.133
MGP_PWKPhJ_G0029639	Prdm5	90	42.609	MGP_PWKPhJ_G0032486	Zfp882	94	35.714
MGP_PWKPhJ_G0029639	Prdm5	77	37.671	MGP_PWKPhJ_G0019743	Zfp493	90	40.071
MGP_PWKPhJ_G0029639	Prdm5	68	48.544	MGP_PWKPhJ_G0032940	Snai3	55	42.336
MGP_PWKPhJ_G0029639	Prdm5	87	46.739	MGP_PWKPhJ_G0023554	Zfp236	67	43.860
MGP_PWKPhJ_G0029639	Prdm5	76	40.000	MGP_PWKPhJ_G0018067	Zfp652	50	36.242
MGP_PWKPhJ_G0029639	Prdm5	74	40.104	MGP_PWKPhJ_G0030363	Zfp628	60	38.208
MGP_PWKPhJ_G0029639	Prdm5	69	43.448	MGP_PWKPhJ_G0017355	Zfp354a	62	43.448
MGP_PWKPhJ_G0029639	Prdm5	83	35.612	MGP_PWKPhJ_G0022233	Zfp945	77	48.315
MGP_PWKPhJ_G0029639	Prdm5	90	40.588	MGP_PWKPhJ_G0030872	-	99	40.588
MGP_PWKPhJ_G0029639	Prdm5	75	34.091	MGP_PWKPhJ_G0025843	Zfp64	69	31.894
MGP_PWKPhJ_G0029639	Prdm5	85	38.112	MGP_PWKPhJ_G0019718	Zfp759	95	38.112
MGP_PWKPhJ_G0029639	Prdm5	84	43.277	MGP_PWKPhJ_G0019717	Rslcan18	73	45.312
MGP_PWKPhJ_G0029639	Prdm5	91	48.387	MGP_PWKPhJ_G0030753	Zfp420	95	41.722
MGP_PWKPhJ_G0029639	Prdm5	78	44.444	MGP_PWKPhJ_G0029981	Zfp637	83	46.479
MGP_PWKPhJ_G0029639	Prdm5	88	42.857	MGP_PWKPhJ_G0017438	Zfp672	86	44.286
MGP_PWKPhJ_G0029639	Prdm5	95	43.220	MGP_PWKPhJ_G0022212	Zfp677	78	36.027
MGP_PWKPhJ_G0029639	Prdm5	96	39.319	MGP_PWKPhJ_G0022214	Zfp51	98	39.319
MGP_PWKPhJ_G0029639	Prdm5	84	36.545	MGP_PWKPhJ_G0017480	Zfp867	94	36.545
MGP_PWKPhJ_G0029639	Prdm5	72	48.760	MGP_PWKPhJ_G0030874	Zfp715	66	39.333
MGP_PWKPhJ_G0029639	Prdm5	67	50.847	MGP_PWKPhJ_G0032857	Zfp1	68	40.167
MGP_PWKPhJ_G0029639	Prdm5	78	42.775	MGP_PWKPhJ_G0025379	Zfp661	60	46.903
MGP_PWKPhJ_G0029639	Prdm5	61	45.045	MGP_PWKPhJ_G0025147	Wt1	55	40.876
MGP_PWKPhJ_G0029639	Prdm5	75	39.493	MGP_PWKPhJ_G0031767	Zfp768	53	43.571
MGP_PWKPhJ_G0029639	Prdm5	71	46.789	MGP_PWKPhJ_G0033190	Zfp872	97	35.866
MGP_PWKPhJ_G0029639	Prdm5	81	33.010	MGP_PWKPhJ_G0015687	Zbtb41	52	33.010
MGP_PWKPhJ_G0029639	Prdm5	84	36.243	MGP_PWKPhJ_G0019737	Zfp748	96	36.427
MGP_PWKPhJ_G0029639	Prdm5	79	40.244	MGP_PWKPhJ_G0028339	Zbtb49	96	45.070
MGP_PWKPhJ_G0029639	Prdm5	78	34.752	MGP_PWKPhJ_G0032702	Zfp319	86	39.041
MGP_PWKPhJ_G0029639	Prdm5	91	39.062	MGP_PWKPhJ_G0021012	Zfp251	85	39.062
MGP_PWKPhJ_G0029639	Prdm5	79	46.377	MGP_PWKPhJ_G0022237	Zscan10	88	44.915
MGP_PWKPhJ_G0029639	Prdm5	68	42.361	MGP_PWKPhJ_G0029510	Repin1	92	42.069
MGP_PWKPhJ_G0029639	Prdm5	68	47.826	MGP_PWKPhJ_G0030592	Zfp61	54	41.102
MGP_PWKPhJ_G0029639	Prdm5	74	48.913	MGP_PWKPhJ_G0030593	Zfp94	73	48.913
MGP_PWKPhJ_G0029639	Prdm5	90	46.067	MGP_PWKPhJ_G0025805	Zfp334	82	39.207
MGP_PWKPhJ_G0029639	Prdm5	67	47.872	MGP_PWKPhJ_G0030591	Zfp93	62	39.073
MGP_PWKPhJ_G0029639	Prdm5	80	41.060	MGP_PWKPhJ_G0019323	Zkscan4	54	41.509