EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_PWKPhJ_G0032559 (Gene tree)
Gene ID: -
Gene Symbol: Ddx39
Alias: 2610307C23Rik|BAT1|DDXL|Ddx39a|URH49
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39
Gene Type: protein_coding
Species: Mus_musculus_pwkphj
Status: putative
Strand: Plus strand
Length: 11964 bases
Position: chr8:80107633-80119596
Accession: 1915528
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PWKPhJ_P0089153	ResIII	PF04851.15	3.1e-05	1	1
MGP_PWKPhJ_P0089156	ResIII	PF04851.15	3.1e-05	1	1
MGP_PWKPhJ_P0089157	ResIII	PF04851.15	3.1e-05	1	1
MGP_PWKPhJ_P0089153	DEAD	PF00270.29	4.2e-38	1	1
MGP_PWKPhJ_P0089156	DEAD	PF00270.29	4.2e-38	1	1
MGP_PWKPhJ_P0089157	DEAD	PF00270.29	4.2e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PWKPhJ_T0089153	-	1656	XM_006531332	MGP_PWKPhJ_P0089153	427 (aa)	XP_006531395	Q8VDW0
MGP_PWKPhJ_T0089154	-	1927	-	-	- (aa)	-	-
MGP_PWKPhJ_T0089155	-	1551	-	MGP_PWKPhJ_P0089155	208 (aa)	-	-
MGP_PWKPhJ_T0089156	-	4041	-	MGP_PWKPhJ_P0089156	427 (aa)	-	-
MGP_PWKPhJ_T0089157	-	1794	-	MGP_PWKPhJ_P0089157	427 (aa)	-	-
MGP_PWKPhJ_T0089158	-	754	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_PWKPhJ_G0032559's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PWKPhJ_G0032559's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PWKPhJ_G0032559	Ddx39	86	35.385	MGP_PWKPhJ_G0018547	Eif4a3	89	35.385
MGP_PWKPhJ_G0032559	Ddx39	87	33.156	MGP_PWKPhJ_G0032421	Ddx49	97	33.333
MGP_PWKPhJ_G0032559	Ddx39	85	31.183	MGP_PWKPhJ_G0033245	Ddx25	81	31.328
MGP_PWKPhJ_G0032559	Ddx39	90	30.392	MGP_PWKPhJ_G0016052	D1Pas1	57	31.565
MGP_PWKPhJ_G0032559	Ddx39	100	90.888	MGP_PWKPhJ_G0022604	Ddx39b	100	90.888
MGP_PWKPhJ_G0032559	Ddx39	90	33.920	MGP_PWKPhJ_G0017628	Eif4a1	94	33.920
MGP_PWKPhJ_G0032559	Ddx39	86	38.108	MGP_PWKPhJ_G0021677	Eif4a2	90	38.108
MGP_PWKPhJ_G0032559	Ddx39	90	34.074	MGP_PWKPhJ_G0026602	Ddx20	50	34.140
MGP_PWKPhJ_G0032559	Ddx39	74	34.715	MGP_PWKPhJ_G0030219	Gm5580	91	32.188
MGP_PWKPhJ_G0032559	Ddx39	74	34.969	MGP_PWKPhJ_G0017114	Ddx56	61	32.051
MGP_PWKPhJ_G0032559	Ddx39	84	33.708	MGP_PWKPhJ_G0032847	Ddx19b	73	31.579
MGP_PWKPhJ_G0032559	Ddx39	89	32.620	MGP_PWKPhJ_G0030210	Ddx47	90	32.095