EuRBPDB

Description

Ensembl ID: MGP_PWKPhJ_G0033812 (Gene tree)
Gene ID: -
Gene Symbol: Syncrip
Alias: 2610109K23Rik|4632417O19Rik|GRY-RBP|Hnrpq|Nsap1|Nsap1l|RRM RNA binding protein GRY-RBP|hnRNP Q|pp68
Full Name: synaptotagmin binding%2C cytoplasmic RNA interacting protein
Gene Type: protein_coding
Species: Mus_musculus_pwkphj
Status: putative
Strand: Minus strand
Length: 36814 bases
Position: chr9:85885063-85921876
Accession: 1891690
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PWKPhJ_P0093146	RRM_5	PF13893.6	2.5e-06	1	1
MGP_PWKPhJ_P0093149	RRM_5	PF13893.6	3.3e-06	1	1
MGP_PWKPhJ_P0093147	RRM_5	PF13893.6	4.8e-06	1	1
MGP_PWKPhJ_P0093144	RRM_5	PF13893.6	4.9e-06	1	1
MGP_PWKPhJ_P0093150	RRM_5	PF13893.6	6.3e-06	1	1
MGP_PWKPhJ_P0093147	RRM_1	PF00076.22	3e-44	1	3
MGP_PWKPhJ_P0093147	RRM_1	PF00076.22	3e-44	2	3
MGP_PWKPhJ_P0093147	RRM_1	PF00076.22	3e-44	3	3
MGP_PWKPhJ_P0093144	RRM_1	PF00076.22	3.1e-44	1	3
MGP_PWKPhJ_P0093144	RRM_1	PF00076.22	3.1e-44	2	3
MGP_PWKPhJ_P0093144	RRM_1	PF00076.22	3.1e-44	3	3
MGP_PWKPhJ_P0093150	RRM_1	PF00076.22	4.7e-44	1	3
MGP_PWKPhJ_P0093150	RRM_1	PF00076.22	4.7e-44	2	3
MGP_PWKPhJ_P0093150	RRM_1	PF00076.22	4.7e-44	3	3
MGP_PWKPhJ_P0093146	RRM_1	PF00076.22	8.5e-43	1	3
MGP_PWKPhJ_P0093146	RRM_1	PF00076.22	8.5e-43	2	3
MGP_PWKPhJ_P0093146	RRM_1	PF00076.22	8.5e-43	3	3
MGP_PWKPhJ_P0093149	RRM_1	PF00076.22	1.4e-42	1	3
MGP_PWKPhJ_P0093149	RRM_1	PF00076.22	1.4e-42	2	3
MGP_PWKPhJ_P0093149	RRM_1	PF00076.22	1.4e-42	3	3
MGP_PWKPhJ_P0093145	RRM_1	PF00076.22	1.4e-31	1	2
MGP_PWKPhJ_P0093145	RRM_1	PF00076.22	1.4e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PWKPhJ_T0093148	-	1924	-	MGP_PWKPhJ_P0093148	67 (aa)	-	-
MGP_PWKPhJ_T0093149	-	1767	-	MGP_PWKPhJ_P0093149	588 (aa)	-	-
MGP_PWKPhJ_T0093153	-	2385	-	-	- (aa)	-	-
MGP_PWKPhJ_T0093152	-	766	-	MGP_PWKPhJ_P0093152	196 (aa)	-	-
MGP_PWKPhJ_T0093151	-	549	-	-	- (aa)	-	-
MGP_PWKPhJ_T0093150	-	2397	-	MGP_PWKPhJ_P0093150	623 (aa)	-	-
MGP_PWKPhJ_T0093144	-	9402	XM_006511293	MGP_PWKPhJ_P0093144	562 (aa)	XP_006511356	Q7TMK9
MGP_PWKPhJ_T0093145	-	3398	-	MGP_PWKPhJ_P0093145	448 (aa)	-	-
MGP_PWKPhJ_T0093146	-	3509	-	MGP_PWKPhJ_P0093146	527 (aa)	-	-
MGP_PWKPhJ_T0093147	-	3519	-	MGP_PWKPhJ_P0093147	561 (aa)	-	-
MGP_PWKPhJ_T0093154	-	426	-	MGP_PWKPhJ_P0093154	94 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PWKPhJ_G0033812	Syncrip	70	84.304	MGP_PWKPhJ_G0027814	-	99	81.716
MGP_PWKPhJ_G0033812	Syncrip	75	57.522	MGP_PWKPhJ_G0028419	Rbm47	88	58.451
MGP_PWKPhJ_G0033812	Syncrip	53	54.333	MGP_PWKPhJ_G0026227	Rbm46	63	55.000
MGP_PWKPhJ_G0033812	Syncrip	58	52.308	MGP_PWKPhJ_G0023988	A1cf	51	53.398