EuRBPDB

Description

Ensembl ID: MGP_PWKPhJ_G0034347 (Gene tree)
Gene ID: -
Gene Symbol: Smarca1
Alias: 5730494M04Rik|Snf2l
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Mus_musculus_pwkphj
Status: putative
Strand: Minus strand
Length: 74581 bases
Position: chrX:30314859-30389439
Accession: 1935127
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PWKPhJ_P0095585	ResIII	PF04851.15	4.7e-12	1	1
MGP_PWKPhJ_P0095584	ResIII	PF04851.15	1.2e-11	1	1
MGP_PWKPhJ_P0095582	ResIII	PF04851.15	1.9e-11	1	1
MGP_PWKPhJ_P0095581	ResIII	PF04851.15	1.9e-11	1	1
MGP_PWKPhJ_P0095583	ResIII	PF04851.15	1.9e-11	1	1
MGP_PWKPhJ_P0095581	DEAD	PF00270.29	1.3e-06	1	1
MGP_PWKPhJ_P0095583	DEAD	PF00270.29	1.3e-06	1	1
MGP_PWKPhJ_P0095582	DEAD	PF00270.29	1.3e-06	1	1
MGP_PWKPhJ_P0095585	DEAD	PF00270.29	2.4e-06	1	1
MGP_PWKPhJ_P0095584	DEAD	PF00270.29	3.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PWKPhJ_T0095582	-	3990	-	MGP_PWKPhJ_P0095582	1062 (aa)	-	-
MGP_PWKPhJ_T0095583	-	4798	-	MGP_PWKPhJ_P0095583	1046 (aa)	-	-
MGP_PWKPhJ_T0095581	-	4023	XM_006541563	MGP_PWKPhJ_P0095581	1046 (aa)	XP_006541626	Q6PGB8
MGP_PWKPhJ_T0095586	-	360	-	MGP_PWKPhJ_P0095586	117 (aa)	-	-
MGP_PWKPhJ_T0095587	-	409	-	-	- (aa)	-	-
MGP_PWKPhJ_T0095584	-	2304	-	MGP_PWKPhJ_P0095584	768 (aa)	-	-
MGP_PWKPhJ_T0095585	-	1964	-	MGP_PWKPhJ_P0095585	381 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PWKPhJ_G0034347	Smarca1	60	38.889	MGP_PWKPhJ_G0029634	Smarcad1	51	37.477
MGP_PWKPhJ_G0034347	Smarca1	67	30.348	MGP_PWKPhJ_G0019689	Ercc6l2	81	41.818
MGP_PWKPhJ_G0034347	Smarca1	72	45.247	MGP_PWKPhJ_G0024048	Hells	65	47.410
MGP_PWKPhJ_G0034347	Smarca1	75	42.445	MGP_PWKPhJ_G0026525	Chd1l	63	43.101
MGP_PWKPhJ_G0034347	Smarca1	72	30.782	MGP_PWKPhJ_G0026928	Rad54b	66	31.395
MGP_PWKPhJ_G0034347	Smarca1	61	32.031	MGP_PWKPhJ_G0027474	Rad54l	66	32.866