EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_PWKPhJ_G0034702 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc5
Alias: C820015E17
Full Name: poly(A) binding protein%2C cytoplasmic 5
Gene Type: protein_coding
Species: Mus_musculus_pwkphj
Status: putative
Strand: Plus strand
Length: 2896 bases
Position: chrX:98118630-98121525
Accession: 2136401
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PWKPhJ_P0096854	RRM_5	PF13893.6	7.4e-12	1	2
MGP_PWKPhJ_P0096854	RRM_5	PF13893.6	7.4e-12	2	2
MGP_PWKPhJ_P0096855	RRM_5	PF13893.6	7.4e-12	1	2
MGP_PWKPhJ_P0096855	RRM_5	PF13893.6	7.4e-12	2	2
MGP_PWKPhJ_P0096854	RRM_1	PF00076.22	1.1e-77	1	4
MGP_PWKPhJ_P0096854	RRM_1	PF00076.22	1.1e-77	2	4
MGP_PWKPhJ_P0096854	RRM_1	PF00076.22	1.1e-77	3	4
MGP_PWKPhJ_P0096854	RRM_1	PF00076.22	1.1e-77	4	4
MGP_PWKPhJ_P0096855	RRM_1	PF00076.22	1.1e-77	1	4
MGP_PWKPhJ_P0096855	RRM_1	PF00076.22	1.1e-77	2	4
MGP_PWKPhJ_P0096855	RRM_1	PF00076.22	1.1e-77	3	4
MGP_PWKPhJ_P0096855	RRM_1	PF00076.22	1.1e-77	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PWKPhJ_T0096855	-	2015	-	MGP_PWKPhJ_P0096855	380 (aa)	-	-
MGP_PWKPhJ_T0096854	-	2206	-	MGP_PWKPhJ_P0096854	380 (aa)	-	Q8C7D3

Gene Model

Click here to download MGP_PWKPhJ_G0034702's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PWKPhJ_G0034702's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PWKPhJ_G0034702	Pabpc5	96	56.944	MGP_PWKPhJ_G0025746	Pabpc1l	64	57.022
MGP_PWKPhJ_G0034702	Pabpc5	96	57.967	MGP_PWKPhJ_G0026090	Pabpc4l	97	57.865
MGP_PWKPhJ_G0034702	Pabpc5	94	67.805	MGP_PWKPhJ_G0020798	Pabpc1	79	68.182
MGP_PWKPhJ_G0034702	Pabpc5	61	36.709	MGP_PWKPhJ_G0026435	Celf3	55	35.616
MGP_PWKPhJ_G0034702	Pabpc5	94	33.333	MGP_PWKPhJ_G0029778	Tia1	84	34.247
MGP_PWKPhJ_G0034702	Pabpc5	70	35.955	MGP_PWKPhJ_G0016671	Celf5	56	35.955
MGP_PWKPhJ_G0034702	Pabpc5	96	58.445	MGP_PWKPhJ_G0022132	Pabpc6	59	58.470
MGP_PWKPhJ_G0034702	Pabpc5	94	37.037	MGP_PWKPhJ_G0027303	Elavl2	89	37.037
MGP_PWKPhJ_G0034702	Pabpc5	63	34.483	MGP_PWKPhJ_G0033610	Celf6	51	34.483
MGP_PWKPhJ_G0034702	Pabpc5	96	61.111	MGP_PWKPhJ_G0023321	Pabpc2	59	60.955