EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0012770 (Gene tree)
Gene ID: 110318374
Gene Symbol: Rbm42
Alias: 1700003D06Rik|3100004P22Rik
Full Name: RNA binding motif protein 42
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Minus strand
Length: 11017 bases
Position: chr1:3582070-3593086
Accession: 110318374
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0015629	RRM_1	PF00076.22	1.1e-17	1	1
MGP_PahariEiJ_P0015628	RRM_1	PF00076.22	1.2e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0015630	-	1063	-	-	- (aa)	-	-
MGP_PahariEiJ_T0015629	-	1526	XM_021193390	MGP_PahariEiJ_P0015629	449 (aa)	XP_021049049	UPI000A30BAA5
MGP_PahariEiJ_T0015628	-	1794	XM_021193380	MGP_PahariEiJ_P0015628	478 (aa)	XP_021049039	UPI000A30B2DD

Gene Model

Click here to download MGP_PahariEiJ_G0012770's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0012770's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0012770	Rbm42	99	97.083	ENSG00000126254	RBM42	100	100.000	Homo_sapiens
MGP_PahariEiJ_G0012770	Rbm42	99	96.868	ENSAMEG00000000524	RBM42	100	96.868	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0012770	Rbm42	99	97.065	ENSANAG00000027537	RBM42	100	100.000	Aotus_nancymaae
MGP_PahariEiJ_G0012770	Rbm42	99	96.855	ENSBTAG00000013440	RBM42	100	96.855	Bos_taurus
MGP_PahariEiJ_G0012770	Rbm42	99	97.545	ENSCJAG00000010220	RBM42	100	100.000	Callithrix_jacchus
MGP_PahariEiJ_G0012770	Rbm42	99	90.566	ENSCAFG00020018628	RBM42	96	100.000	Canis_lupus_dingo
MGP_PahariEiJ_G0012770	Rbm42	99	96.875	ENSCHIG00000009518	RBM42	100	96.875	Capra_hircus
MGP_PahariEiJ_G0012770	Rbm42	99	96.862	ENSTSYG00000014688	RBM42	100	100.000	Carlito_syrichta
MGP_PahariEiJ_G0012770	Rbm42	81	97.927	ENSCAPG00000009566	RBM42	99	97.927	Cavia_aperea
MGP_PahariEiJ_G0012770	Rbm42	99	96.674	ENSCPOG00000012365	RBM42	99	96.674	Cavia_porcellus
MGP_PahariEiJ_G0012770	Rbm42	99	97.694	ENSCCAG00000034440	RBM42	100	100.000	Cebus_capucinus
MGP_PahariEiJ_G0012770	Rbm42	99	97.059	ENSCATG00000041924	RBM42	100	100.000	Cercocebus_atys
MGP_PahariEiJ_G0012770	Rbm42	99	97.118	ENSCLAG00000012865	RBM42	99	97.118	Chinchilla_lanigera
MGP_PahariEiJ_G0012770	Rbm42	99	96.674	ENSCSAG00000004422	RBM42	100	96.674	Chlorocebus_sabaeus
MGP_PahariEiJ_G0012770	Rbm42	99	88.397	ENSCANG00000030272	RBM42	100	88.397	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0012770	Rbm42	99	98.113	ENSCGRG00001018540	Rbm42	99	98.113	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0012770	Rbm42	99	96.250	ENSDNOG00000037397	RBM42	100	96.250	Dasypus_novemcinctus
MGP_PahariEiJ_G0012770	Rbm42	99	97.545	ENSDORG00000013001	Rbm42	99	97.545	Dipodomys_ordii
MGP_PahariEiJ_G0012770	Rbm42	75	90.909	ENSETEG00000007878	RBM42	73	90.909	Echinops_telfairi
MGP_PahariEiJ_G0012770	Rbm42	99	98.202	ENSEASG00005001074	RBM42	100	98.202	Equus_asinus_asinus
MGP_PahariEiJ_G0012770	Rbm42	99	98.202	ENSECAG00000018215	RBM42	100	98.202	Equus_caballus
MGP_PahariEiJ_G0012770	Rbm42	99	97.694	ENSFCAG00000006376	RBM42	100	100.000	Felis_catus
MGP_PahariEiJ_G0012770	Rbm42	99	96.889	ENSFDAG00000007440	RBM42	99	96.889	Fukomys_damarensis
MGP_PahariEiJ_G0012770	Rbm42	99	97.269	ENSGGOG00000009972	RBM42	100	100.000	Gorilla_gorilla
MGP_PahariEiJ_G0012770	Rbm42	97	95.642	ENSHGLG00000008418	RBM42	99	95.536	Heterocephalus_glaber_female
MGP_PahariEiJ_G0012770	Rbm42	97	95.642	ENSHGLG00100018667	RBM42	99	95.536	Heterocephalus_glaber_male
MGP_PahariEiJ_G0012770	Rbm42	99	97.561	ENSSTOG00000013050	RBM42	99	97.561	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0012770	Rbm42	99	98.430	ENSJJAG00000010421	Rbm42	99	98.430	Jaculus_jaculus
MGP_PahariEiJ_G0012770	Rbm42	97	92.505	ENSLAFG00000014993	RBM42	100	90.833	Loxodonta_africana
MGP_PahariEiJ_G0012770	Rbm42	99	97.059	ENSMFAG00000002758	RBM42	100	100.000	Macaca_fascicularis
MGP_PahariEiJ_G0012770	Rbm42	100	96.659	ENSMMUG00000018954	RBM42	100	100.000	Macaca_mulatta
MGP_PahariEiJ_G0012770	Rbm42	99	96.875	ENSMNEG00000030009	RBM42	100	100.000	Macaca_nemestrina
MGP_PahariEiJ_G0012770	Rbm42	99	97.059	ENSMLEG00000036119	RBM42	100	100.000	Mandrillus_leucophaeus
MGP_PahariEiJ_G0012770	Rbm42	99	97.904	ENSMICG00000009880	RBM42	100	100.000	Microcebus_murinus
MGP_PahariEiJ_G0012770	Rbm42	99	98.532	ENSMOCG00000000405	Rbm42	99	98.532	Microtus_ochrogaster
MGP_PahariEiJ_G0012770	Rbm42	100	99.582	MGP_CAROLIEiJ_G0029536	Rbm42	100	99.582	Mus_caroli
MGP_PahariEiJ_G0012770	Rbm42	100	99.582	ENSMUSG00000036733	Rbm42	100	99.582	Mus_musculus
MGP_PahariEiJ_G0012770	Rbm42	100	99.582	MGP_SPRETEiJ_G0030632	Rbm42	100	99.582	Mus_spretus
MGP_PahariEiJ_G0012770	Rbm42	99	97.321	ENSMPUG00000006288	RBM42	100	97.321	Mustela_putorius_furo
MGP_PahariEiJ_G0012770	Rbm42	99	96.017	ENSMLUG00000011334	RBM42	100	96.017	Myotis_lucifugus
MGP_PahariEiJ_G0012770	Rbm42	99	96.855	ENSNGAG00000019698	Rbm42	99	96.855	Nannospalax_galili
MGP_PahariEiJ_G0012770	Rbm42	70	98.802	ENSNLEG00000011272	-	94	91.899	Nomascus_leucogenys
MGP_PahariEiJ_G0012770	Rbm42	95	83.660	ENSMEUG00000016300	RBM42	100	84.728	Notamacropus_eugenii
MGP_PahariEiJ_G0012770	Rbm42	99	93.082	ENSOPRG00000001229	RBM42	100	87.841	Ochotona_princeps
MGP_PahariEiJ_G0012770	Rbm42	99	96.674	ENSODEG00000013705	RBM42	99	96.674	Octodon_degus
MGP_PahariEiJ_G0012770	Rbm42	99	96.452	ENSOCUG00000003337	RBM42	100	96.452	Oryctolagus_cuniculus
MGP_PahariEiJ_G0012770	Rbm42	99	96.436	ENSOGAG00000004144	RBM42	100	96.436	Otolemur_garnettii
MGP_PahariEiJ_G0012770	Rbm42	97	88.437	ENSOARG00000004926	RBM42	99	91.649	Ovis_aries
MGP_PahariEiJ_G0012770	Rbm42	99	97.484	ENSPPAG00000037315	RBM42	100	100.000	Pan_paniscus
MGP_PahariEiJ_G0012770	Rbm42	99	97.694	ENSPPRG00000016784	RBM42	100	100.000	Panthera_pardus
MGP_PahariEiJ_G0012770	Rbm42	99	97.275	ENSPTIG00000019270	RBM42	100	100.000	Panthera_tigris_altaica
MGP_PahariEiJ_G0012770	Rbm42	99	97.269	ENSPTRG00000010852	RBM42	100	100.000	Pan_troglodytes
MGP_PahariEiJ_G0012770	Rbm42	99	97.257	ENSPANG00000017032	RBM42	100	100.000	Papio_anubis
MGP_PahariEiJ_G0012770	Rbm42	99	99.161	ENSPEMG00000012065	Rbm42	99	99.161	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0012770	Rbm42	99	96.082	ENSPPYG00000009871	RBM42	100	96.082	Pongo_abelii
MGP_PahariEiJ_G0012770	Rbm42	88	96.393	ENSPCAG00000013053	RBM42	100	83.857	Procavia_capensis
MGP_PahariEiJ_G0012770	Rbm42	99	97.904	ENSPCOG00000026433	-	100	100.000	Propithecus_coquereli
MGP_PahariEiJ_G0012770	Rbm42	70	99.099	ENSPCOG00000020672	RBM42	81	99.099	Propithecus_coquereli
MGP_PahariEiJ_G0012770	Rbm42	99	96.855	ENSPVAG00000012815	RBM42	100	96.855	Pteropus_vampyrus
MGP_PahariEiJ_G0012770	Rbm42	100	99.372	ENSRNOG00000024278	Rbm42	100	99.372	Rattus_norvegicus
MGP_PahariEiJ_G0012770	Rbm42	99	97.059	ENSRBIG00000007566	RBM42	100	100.000	Rhinopithecus_bieti
MGP_PahariEiJ_G0012770	Rbm42	99	97.484	ENSRROG00000042313	RBM42	100	100.000	Rhinopithecus_roxellana
MGP_PahariEiJ_G0012770	Rbm42	85	98.522	ENSSBOG00000030666	RBM42	100	98.522	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0012770	Rbm42	99	87.292	ENSSARG00000010724	RBM42	100	87.292	Sorex_araneus
MGP_PahariEiJ_G0012770	Rbm42	99	96.652	ENSSSCG00000002905	RBM42	100	96.652	Sus_scrofa
MGP_PahariEiJ_G0012770	Rbm42	99	97.065	ENSUAMG00000020711	RBM42	100	97.065	Ursus_americanus
MGP_PahariEiJ_G0012770	Rbm42	99	97.065	ENSUMAG00000020223	RBM42	100	97.065	Ursus_maritimus
MGP_PahariEiJ_G0012770	Rbm42	99	97.098	ENSVVUG00000015117	RBM42	100	97.098	Vulpes_vulpes