EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0012939 (Gene tree)
Gene ID: 110323666
Gene Symbol: Snrnp70
Alias: 2700022N21Rik|3200002N22Rik|Rnulp70|Snrp70|Srnp70|U1-70
Full Name: small nuclear ribonucleoprotein U1 subunit 70
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Minus strand
Length: 21187 bases
Position: chr1:18069445-18090631
Accession: 110323666
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0016363	RRM_1	PF00076.22	1e-17	1	1
MGP_PahariEiJ_P0016372	RRM_1	PF00076.22	3.9e-13	1	1
MGP_PahariEiJ_P0016364	RRM_1	PF00076.22	2.1e-08	1	1
MGP_PahariEiJ_P0016374	U1snRNP70_N	PF12220.8	5.3e-29	1	1
MGP_PahariEiJ_P0016372	U1snRNP70_N	PF12220.8	1.4e-28	1	1
MGP_PahariEiJ_P0016363	U1snRNP70_N	PF12220.8	1.9e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0016367	-	707	-	MGP_PahariEiJ_P0016367	115 (aa)	-	-
MGP_PahariEiJ_T0016366	-	3033	-	-	- (aa)	-	-
MGP_PahariEiJ_T0016365	-	3945	-	-	- (aa)	-	-
MGP_PahariEiJ_T0016364	-	461	-	MGP_PahariEiJ_P0016364	86 (aa)	-	UPI000719A2D0
MGP_PahariEiJ_T0016363	-	1742	XM_021201008	MGP_PahariEiJ_P0016363	447 (aa)	XP_021056667	UPI000A30739D
MGP_PahariEiJ_T0016369	-	736	-	-	- (aa)	-	-
MGP_PahariEiJ_T0016368	-	2918	-	-	- (aa)	-	-
MGP_PahariEiJ_T0016370	-	630	-	-	- (aa)	-	-
MGP_PahariEiJ_T0016371	-	617	-	MGP_PahariEiJ_P0016371	111 (aa)	-	-
MGP_PahariEiJ_T0016372	-	619	-	MGP_PahariEiJ_P0016372	168 (aa)	-	UPI000719A347
MGP_PahariEiJ_T0016373	-	510	-	-	- (aa)	-	-
MGP_PahariEiJ_T0016374	-	621	-	MGP_PahariEiJ_P0016374	109 (aa)	-	UPI0003D172CD
MGP_PahariEiJ_T0016375	-	215	-	-	- (aa)	-	-
MGP_PahariEiJ_T0016376	-	1700	-	-	- (aa)	-	-
MGP_PahariEiJ_T0016377	-	580	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0012939's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0012939's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PahariEiJ_G0012939	Snrnp70	70	46.667	MGP_PahariEiJ_G0024332	Snrnp35	61	48.649

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSG00000104852	SNRNP70	100	100.000	Homo_sapiens
MGP_PahariEiJ_G0012939	Snrnp70	100	91.743	ENSAPOG00000009322	snrnp70	89	88.028	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSAMEG00000014468	SNRNP70	100	93.080	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0012939	Snrnp70	100	91.743	ENSAOCG00000011672	snrnp70	56	82.707	Amphiprion_ocellaris
MGP_PahariEiJ_G0012939	Snrnp70	100	97.248	ENSACAG00000013276	SNRNP70	51	97.297	Anolis_carolinensis
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSANAG00000036787	SNRNP70	99	97.561	Aotus_nancymaae
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSBTAG00000048800	-	99	97.561	Bos_taurus
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSCJAG00000000193	SNRNP70	99	98.814	Callithrix_jacchus
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSCAFG00000003711	SNRNP70	99	97.561	Canis_familiaris
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSCAFG00020025470	SNRNP70	100	93.764	Canis_lupus_dingo
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSCHIG00000018534	-	99	97.561	Capra_hircus
MGP_PahariEiJ_G0012939	Snrnp70	100	86.179	ENSTSYG00000032350	-	99	86.179	Carlito_syrichta
MGP_PahariEiJ_G0012939	Snrnp70	94	100.000	ENSCAPG00000017198	-	94	100.000	Cavia_aperea
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSCPOG00000019589	SNRNP70	100	95.526	Cavia_porcellus
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSCATG00000016149	SNRNP70	100	94.878	Cercocebus_atys
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSCLAG00000007991	SNRNP70	100	95.526	Chinchilla_lanigera
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSCSAG00000002759	SNRNP70	100	92.873	Chlorocebus_sabaeus
MGP_PahariEiJ_G0012939	Snrnp70	100	99.083	ENSCPBG00000014841	SNRNP70	51	99.099	Chrysemys_picta_bellii
MGP_PahariEiJ_G0012939	Snrnp70	100	64.545	ENSCSAVG00000010109	-	50	70.681	Ciona_savignyi
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSCANG00000036607	SNRNP70	99	99.187	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSCGRG00001020676	Snrnp70	100	98.881	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSCGRG00000018048	Snrnp70	100	98.881	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0012939	Snrnp70	100	90.826	ENSCSEG00000011978	snrnp70	99	91.480	Cynoglossus_semilaevis
MGP_PahariEiJ_G0012939	Snrnp70	100	90.826	ENSCVAG00000003912	snrnp70	100	90.625	Cyprinodon_variegatus
MGP_PahariEiJ_G0012939	Snrnp70	100	88.991	ENSDARG00000077126	snrnp70	99	88.820	Danio_rerio
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSDNOG00000035849	-	99	97.561	Dasypus_novemcinctus
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSDORG00000010228	Snrnp70	100	95.312	Dipodomys_ordii
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSEASG00005004917	SNRNP70	100	95.749	Equus_asinus_asinus
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSECAG00000013936	-	99	97.561	Equus_caballus
MGP_PahariEiJ_G0012939	Snrnp70	90	95.192	ENSEEUG00000005666	SNRNP70	53	77.391	Erinaceus_europaeus
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSFCAG00000042603	SNRNP70	55	100.000	Felis_catus
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSFDAG00000013830	SNRNP70	95	98.780	Fukomys_damarensis
MGP_PahariEiJ_G0012939	Snrnp70	100	89.908	ENSGMOG00000011492	snrnp70	97	91.403	Gadus_morhua
MGP_PahariEiJ_G0012939	Snrnp70	100	90.826	ENSGACG00000000448	snrnp70	70	91.928	Gasterosteus_aculeatus
MGP_PahariEiJ_G0012939	Snrnp70	95	80.102	ENSGAGG00000012628	SNRNP70	99	80.000	Gopherus_agassizii
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSGGOG00000008245	SNRNP70	99	97.561	Gorilla_gorilla
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSHGLG00100001651	-	99	97.561	Heterocephalus_glaber_male
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSSTOG00000013988	-	99	97.561	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSJJAG00000002614	Snrnp70	100	95.749	Jaculus_jaculus
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSLAFG00000028536	SNRNP70	100	100.000	Loxodonta_africana
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSMFAG00000039824	SNRNP70	100	94.878	Macaca_fascicularis
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSMMUG00000004928	SNRNP70	99	97.561	Macaca_mulatta
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSMNEG00000038057	SNRNP70	100	92.428	Macaca_nemestrina
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSMLEG00000030967	SNRNP70	100	94.878	Mandrillus_leucophaeus
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSMAUG00000020970	Snrnp70	100	98.658	Mesocricetus_auratus
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSMICG00000038437	SNRNP70	100	99.190	Microcebus_murinus
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSMOCG00000012825	Snrnp70	100	99.105	Microtus_ochrogaster
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	MGP_CAROLIEiJ_G0029714	Snrnp70	100	100.000	Mus_caroli
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSMUSG00000063511	Snrnp70	100	100.000	Mus_musculus
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	Mus_spretus
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSMPUG00000003258	SNRNP70	100	95.078	Mustela_putorius_furo
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSMLUG00000011766	SNRNP70	100	95.526	Myotis_lucifugus
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSNGAG00000021191	Snrnp70	100	98.837	Nannospalax_galili
MGP_PahariEiJ_G0012939	Snrnp70	100	90.826	ENSNBRG00000003126	snrnp70	96	92.377	Neolamprologus_brichardi
MGP_PahariEiJ_G0012939	Snrnp70	98	96.460	ENSNLEG00000004899	SNRNP70	98	99.177	Nomascus_leucogenys
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSODEG00000017499	SNRNP70	100	94.783	Octodon_degus
MGP_PahariEiJ_G0012939	Snrnp70	100	90.826	ENSONIG00000007822	snrnp70	52	91.928	Oreochromis_niloticus
MGP_PahariEiJ_G0012939	Snrnp70	100	99.083	ENSOANG00000005213	SNRNP70	97	99.550	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSOCUG00000015081	SNRNP70	50	100.000	Oryctolagus_cuniculus
MGP_PahariEiJ_G0012939	Snrnp70	100	99.091	ENSOGAG00000029310	SNRNP70	100	95.312	Otolemur_garnettii
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSOARG00000012608	SNRNP70	93	100.000	Ovis_aries
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSPPAG00000035067	SNRNP70	99	100.000	Pan_paniscus
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSPPRG00000005579	SNRNP70	100	95.078	Panthera_pardus
MGP_PahariEiJ_G0012939	Snrnp70	100	88.288	ENSPTIG00000018250	-	99	88.288	Panthera_tigris_altaica
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSPTRG00000011277	SNRNP70	100	99.602	Pan_troglodytes
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSPANG00000004068	SNRNP70	100	94.878	Papio_anubis
MGP_PahariEiJ_G0012939	Snrnp70	100	84.404	ENSPKIG00000019992	snrnp70	85	80.745	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0012939	Snrnp70	100	99.083	ENSPSIG00000015251	SNRNP70	90	85.217	Pelodiscus_sinensis
MGP_PahariEiJ_G0012939	Snrnp70	100	90.826	ENSPMGG00000010153	snrnp70	78	90.798	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSPEMG00000019011	Snrnp70	100	98.884	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0012939	Snrnp70	100	79.817	ENSPMAG00000008502	snrnp70	97	83.422	Petromyzon_marinus
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSPCIG00000007296	SNRNP70	52	100.000	Phascolarctos_cinereus
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSPPYG00000010234	SNRNP70	100	94.432	Pongo_abelii
MGP_PahariEiJ_G0012939	Snrnp70	92	100.000	ENSPCOG00000023103	SNRNP70	82	91.739	Propithecus_coquereli
MGP_PahariEiJ_G0012939	Snrnp70	100	92.617	ENSPVAG00000009578	SNRNP70	100	92.617	Pteropus_vampyrus
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSRBIG00000042387	SNRNP70	100	94.655	Rhinopithecus_bieti
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSRROG00000033636	SNRNP70	100	94.878	Rhinopithecus_roxellana
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSSBOG00000020026	SNRNP70	99	97.561	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSSHAG00000002194	SNRNP70	52	100.000	Sarcophilus_harrisii
MGP_PahariEiJ_G0012939	Snrnp70	100	99.083	ENSSPUG00000016621	SNRNP70	52	98.649	Sphenodon_punctatus
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSSSCG00000023792	-	99	97.561	Sus_scrofa
MGP_PahariEiJ_G0012939	Snrnp70	100	89.908	ENSTNIG00000014186	-	99	90.000	Tetraodon_nigroviridis
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSTTRG00000017099	SNRNP70	100	95.089	Tursiops_truncatus
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSUAMG00000016147	SNRNP70	100	95.078	Ursus_americanus
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSUMAG00000001467	SNRNP70	99	97.561	Ursus_maritimus
MGP_PahariEiJ_G0012939	Snrnp70	100	99.083	ENSVPAG00000005959	-	100	80.995	Vicugna_pacos
MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	ENSVVUG00000022976	SNRNP70	99	97.561	Vulpes_vulpes
MGP_PahariEiJ_G0012939	Snrnp70	100	94.495	ENSXETG00000022919	snrnp70	57	95.595	Xenopus_tropicalis