EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0013082 (Gene tree)
Gene ID: 110315742
Gene Symbol: Chd2
Alias: 2810013C04Rik|2810040A01Rik|5630401D06Rik
Full Name: chromodomain helicase DNA binding protein 2
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Minus strand
Length: 111807 bases
Position: chr1:45179515-45291321
Accession: 110315742
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0016961	ResIII	PF04851.15	9.7e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0016975	-	3699	-	-	- (aa)	-	-
MGP_PahariEiJ_T0016971	-	1571	-	MGP_PahariEiJ_P0016971	333 (aa)	-	-
MGP_PahariEiJ_T0016970	-	360	-	MGP_PahariEiJ_P0016970	120 (aa)	-	-
MGP_PahariEiJ_T0016972	-	1598	-	-	- (aa)	-	-
MGP_PahariEiJ_T0016974	-	896	-	MGP_PahariEiJ_P0016974	57 (aa)	-	UPI0006644D3F
MGP_PahariEiJ_T0016976	-	1187	-	-	- (aa)	-	-
MGP_PahariEiJ_T0016969	-	558	-	MGP_PahariEiJ_P0016969	74 (aa)	-	-
MGP_PahariEiJ_T0016968	-	392	-	-	- (aa)	-	-
MGP_PahariEiJ_T0016977	-	1384	-	-	- (aa)	-	-
MGP_PahariEiJ_T0016965	-	675	-	-	- (aa)	-	-
MGP_PahariEiJ_T0016964	-	664	-	MGP_PahariEiJ_P0016964	35 (aa)	-	UPI000268AE5F
MGP_PahariEiJ_T0016967	-	339	-	MGP_PahariEiJ_P0016967	112 (aa)	-	-
MGP_PahariEiJ_T0016966	-	582	-	-	- (aa)	-	-
MGP_PahariEiJ_T0016961	-	9099	XM_021189745	MGP_PahariEiJ_P0016961	1826 (aa)	XP_021045404	UPI000A307EB9
MGP_PahariEiJ_T0016973	-	747	-	MGP_PahariEiJ_P0016973	178 (aa)	-	-
MGP_PahariEiJ_T0016963	-	487	-	MGP_PahariEiJ_P0016963	162 (aa)	-	-
MGP_PahariEiJ_T0016962	-	5302	-	MGP_PahariEiJ_P0016962	219 (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0013082's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0013082's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PahariEiJ_G0013082	Chd2	88	60.370	MGP_PahariEiJ_G0023414	Chd1	95	65.431
MGP_PahariEiJ_G0013082	Chd2	62	32.328	MGP_PahariEiJ_G0026048	Chd6	61	37.625

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0013082	Chd2	100	96.720	ENSG00000173575	CHD2	100	97.143	Homo_sapiens
MGP_PahariEiJ_G0013082	Chd2	96	72.605	ENSAPOG00000008913	chd2	100	72.312	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0013082	Chd2	63	97.743	ENSAMEG00000010805	-	100	97.743	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0013082	Chd2	96	70.275	ENSAOCG00000016332	chd2	100	70.022	Amphiprion_ocellaris
MGP_PahariEiJ_G0013082	Chd2	96	72.518	ENSAPEG00000016676	chd2	100	72.174	Amphiprion_percula
MGP_PahariEiJ_G0013082	Chd2	96	71.989	ENSATEG00000005246	chd2	100	71.643	Anabas_testudineus
MGP_PahariEiJ_G0013082	Chd2	100	87.181	ENSAPLG00000011141	-	100	87.127	Anas_platyrhynchos
MGP_PahariEiJ_G0013082	Chd2	98	80.242	ENSACAG00000000088	-	99	79.761	Anolis_carolinensis
MGP_PahariEiJ_G0013082	Chd2	100	96.663	ENSANAG00000024017	-	100	96.663	Aotus_nancymaae
MGP_PahariEiJ_G0013082	Chd2	100	96.554	ENSCJAG00000020444	-	100	96.554	Callithrix_jacchus
MGP_PahariEiJ_G0013082	Chd2	99	96.626	ENSCAFG00000010998	CHD2	100	97.101	Canis_familiaris
MGP_PahariEiJ_G0013082	Chd2	99	94.018	ENSCHIG00000022261	-	99	94.018	Capra_hircus
MGP_PahariEiJ_G0013082	Chd2	100	96.608	ENSTSYG00000003272	-	100	96.608	Carlito_syrichta
MGP_PahariEiJ_G0013082	Chd2	93	96.284	ENSCPOG00000005800	-	100	96.284	Cavia_porcellus
MGP_PahariEiJ_G0013082	Chd2	100	96.663	ENSCCAG00000035304	-	100	96.663	Cebus_capucinus
MGP_PahariEiJ_G0013082	Chd2	100	96.665	ENSCATG00000031069	-	100	96.665	Cercocebus_atys
MGP_PahariEiJ_G0013082	Chd2	100	95.899	ENSCLAG00000016269	-	100	95.899	Chinchilla_lanigera
MGP_PahariEiJ_G0013082	Chd2	100	96.720	ENSCSAG00000017007	-	100	96.720	Chlorocebus_sabaeus
MGP_PahariEiJ_G0013082	Chd2	78	94.545	ENSCHOG00000000608	-	81	94.545	Choloepus_hoffmanni
MGP_PahariEiJ_G0013082	Chd2	81	86.761	ENSCPBG00000018049	-	95	91.325	Chrysemys_picta_bellii
MGP_PahariEiJ_G0013082	Chd2	74	54.381	ENSCSAVG00000007580	-	93	60.105	Ciona_savignyi
MGP_PahariEiJ_G0013082	Chd2	100	96.610	ENSCANG00000038126	-	100	96.610	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0013082	Chd2	100	97.976	ENSCGRG00001006649	Chd2	100	97.976	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0013082	Chd2	100	97.976	ENSCGRG00000018154	Chd2	100	97.976	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0013082	Chd2	98	63.527	ENSCSEG00000003646	chd2	93	66.195	Cynoglossus_semilaevis
MGP_PahariEiJ_G0013082	Chd2	100	64.017	ENSCVAG00000002427	chd2	99	71.265	Cyprinodon_variegatus
MGP_PahariEiJ_G0013082	Chd2	96	70.479	ENSDARG00000060687	chd2	100	71.906	Danio_rerio
MGP_PahariEiJ_G0013082	Chd2	99	95.954	ENSDNOG00000009796	-	100	95.954	Dasypus_novemcinctus
MGP_PahariEiJ_G0013082	Chd2	50	75.532	ENSEBUG00000014994	chd2	83	75.532	Eptatretus_burgeri
MGP_PahariEiJ_G0013082	Chd2	99	96.352	ENSEASG00005015526	-	99	98.958	Equus_asinus_asinus
MGP_PahariEiJ_G0013082	Chd2	95	71.905	ENSELUG00000017981	chd2	100	70.869	Esox_lucius
MGP_PahariEiJ_G0013082	Chd2	100	88.363	ENSFALG00000010369	-	100	88.309	Ficedula_albicollis
MGP_PahariEiJ_G0013082	Chd2	100	95.735	ENSFDAG00000020651	-	100	95.735	Fukomys_damarensis
MGP_PahariEiJ_G0013082	Chd2	88	71.349	ENSFHEG00000002119	chd2	96	69.379	Fundulus_heteroclitus
MGP_PahariEiJ_G0013082	Chd2	94	68.902	ENSGMOG00000002890	chd2	99	70.306	Gadus_morhua
MGP_PahariEiJ_G0013082	Chd2	100	87.466	ENSGALG00000006949	CHD2	100	87.412	Gallus_gallus
MGP_PahariEiJ_G0013082	Chd2	96	70.000	ENSGAFG00000001905	chd2	97	69.812	Gambusia_affinis
MGP_PahariEiJ_G0013082	Chd2	91	70.599	ENSGACG00000013246	chd2	99	70.063	Gasterosteus_aculeatus
MGP_PahariEiJ_G0013082	Chd2	80	89.671	ENSGAGG00000013176	-	95	97.753	Gopherus_agassizii
MGP_PahariEiJ_G0013082	Chd2	100	95.298	ENSGGOG00000015677	CHD2	100	95.298	Gorilla_gorilla
MGP_PahariEiJ_G0013082	Chd2	96	72.640	ENSHBUG00000017947	chd2	100	71.998	Haplochromis_burtoni
MGP_PahariEiJ_G0013082	Chd2	100	95.626	ENSHGLG00000004435	CHD2	100	95.626	Heterocephalus_glaber_female
MGP_PahariEiJ_G0013082	Chd2	100	94.970	ENSHGLG00100016376	-	100	94.970	Heterocephalus_glaber_male
MGP_PahariEiJ_G0013082	Chd2	96	68.236	ENSHCOG00000008855	chd2	98	67.162	Hippocampus_comes
MGP_PahariEiJ_G0013082	Chd2	98	68.560	ENSIPUG00000000488	chd2	100	69.112	Ictalurus_punctatus
MGP_PahariEiJ_G0013082	Chd2	100	96.610	ENSSTOG00000001270	-	100	96.610	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0013082	Chd2	100	95.952	ENSJJAG00000000213	Chd2	100	95.952	Jaculus_jaculus
MGP_PahariEiJ_G0013082	Chd2	84	72.863	ENSKMAG00000015849	chd2	99	73.769	Kryptolebias_marmoratus
MGP_PahariEiJ_G0013082	Chd2	75	96.159	ENSLAFG00000016885	-	100	96.159	Loxodonta_africana
MGP_PahariEiJ_G0013082	Chd2	100	96.774	ENSMFAG00000033343	-	100	96.774	Macaca_fascicularis
MGP_PahariEiJ_G0013082	Chd2	100	96.774	ENSMMUG00000011782	-	100	96.774	Macaca_mulatta
MGP_PahariEiJ_G0013082	Chd2	100	96.395	ENSMNEG00000036875	-	100	96.395	Macaca_nemestrina
MGP_PahariEiJ_G0013082	Chd2	100	96.720	ENSMLEG00000035026	-	100	96.720	Mandrillus_leucophaeus
MGP_PahariEiJ_G0013082	Chd2	96	71.884	ENSMAMG00000009082	chd2	100	71.037	Mastacembelus_armatus
MGP_PahariEiJ_G0013082	Chd2	99	87.438	ENSMGAG00000008966	-	99	87.328	Meleagris_gallopavo
MGP_PahariEiJ_G0013082	Chd2	100	95.022	ENSMICG00000000332	-	99	95.942	Microcebus_murinus
MGP_PahariEiJ_G0013082	Chd2	100	97.594	ENSMOCG00000015124	Chd2	100	97.594	Microtus_ochrogaster
MGP_PahariEiJ_G0013082	Chd2	100	91.077	ENSMODG00000013158	-	100	91.240	Monodelphis_domestica
MGP_PahariEiJ_G0013082	Chd2	96	70.147	ENSMALG00000007755	chd2	98	71.083	Monopterus_albus
MGP_PahariEiJ_G0013082	Chd2	100	98.961	MGP_CAROLIEiJ_G0029860	Chd2	100	98.961	Mus_caroli
MGP_PahariEiJ_G0013082	Chd2	100	98.796	ENSMUSG00000078671	Chd2	100	98.796	Mus_musculus
MGP_PahariEiJ_G0013082	Chd2	100	98.906	MGP_SPRETEiJ_G0030962	Chd2	100	98.906	Mus_spretus
MGP_PahariEiJ_G0013082	Chd2	100	96.554	ENSMPUG00000017577	-	100	96.554	Mustela_putorius_furo
MGP_PahariEiJ_G0013082	Chd2	100	93.652	ENSMLUG00000009292	-	100	93.652	Myotis_lucifugus
MGP_PahariEiJ_G0013082	Chd2	100	96.772	ENSNGAG00000010792	Chd2	100	96.772	Nannospalax_galili
MGP_PahariEiJ_G0013082	Chd2	96	72.000	ENSNBRG00000020591	chd2	100	71.444	Neolamprologus_brichardi
MGP_PahariEiJ_G0013082	Chd2	100	94.150	ENSNLEG00000012349	-	100	93.931	Nomascus_leucogenys
MGP_PahariEiJ_G0013082	Chd2	71	88.764	ENSMEUG00000001522	-	77	88.722	Notamacropus_eugenii
MGP_PahariEiJ_G0013082	Chd2	100	95.025	ENSODEG00000016028	-	100	95.025	Octodon_degus
MGP_PahariEiJ_G0013082	Chd2	96	72.503	ENSONIG00000015136	chd2	100	72.136	Oreochromis_niloticus
MGP_PahariEiJ_G0013082	Chd2	88	81.858	ENSOANG00000004385	-	100	81.734	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0013082	Chd2	100	85.816	ENSOCUG00000001628	-	99	96.893	Oryctolagus_cuniculus
MGP_PahariEiJ_G0013082	Chd2	96	71.822	ENSORLG00000008403	chd2	100	71.075	Oryzias_latipes
MGP_PahariEiJ_G0013082	Chd2	96	72.016	ENSORLG00020004138	chd2	100	71.259	Oryzias_latipes_hni
MGP_PahariEiJ_G0013082	Chd2	100	64.228	ENSOMEG00000005831	chd2	100	65.140	Oryzias_melastigma
MGP_PahariEiJ_G0013082	Chd2	100	94.369	ENSOGAG00000010399	-	100	94.369	Otolemur_garnettii
MGP_PahariEiJ_G0013082	Chd2	99	95.698	ENSOARG00000010343	-	100	94.533	Ovis_aries
MGP_PahariEiJ_G0013082	Chd2	100	95.688	ENSPPAG00000030381	-	100	95.688	Pan_paniscus
MGP_PahariEiJ_G0013082	Chd2	100	96.720	ENSPTRG00000007478	CHD2	100	96.720	Pan_troglodytes
MGP_PahariEiJ_G0013082	Chd2	100	93.822	ENSPANG00000033355	-	100	93.822	Papio_anubis
MGP_PahariEiJ_G0013082	Chd2	99	70.440	ENSPKIG00000000495	chd2	100	72.261	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0013082	Chd2	84	69.814	ENSPMGG00000009941	chd2	99	70.308	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0013082	Chd2	100	97.976	ENSPEMG00000019507	Chd2	100	97.976	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0013082	Chd2	91	91.682	ENSPCIG00000009417	-	100	90.711	Phascolarctos_cinereus
MGP_PahariEiJ_G0013082	Chd2	96	72.636	ENSPFOG00000007050	chd2	100	72.243	Poecilia_formosa
MGP_PahariEiJ_G0013082	Chd2	96	72.916	ENSPLAG00000005067	chd2	100	72.512	Poecilia_latipinna
MGP_PahariEiJ_G0013082	Chd2	96	72.692	ENSPMEG00000019628	chd2	100	72.297	Poecilia_mexicana
MGP_PahariEiJ_G0013082	Chd2	100	95.407	ENSPPYG00000006799	-	100	95.407	Pongo_abelii
MGP_PahariEiJ_G0013082	Chd2	100	96.665	ENSPCOG00000028084	-	100	96.665	Propithecus_coquereli
MGP_PahariEiJ_G0013082	Chd2	68	73.920	ENSPNAG00000016719	chd2	99	69.486	Pygocentrus_nattereri
MGP_PahariEiJ_G0013082	Chd2	100	98.140	ENSRNOG00000012716	Chd2	100	98.140	Rattus_norvegicus
MGP_PahariEiJ_G0013082	Chd2	100	94.590	ENSRBIG00000036875	-	100	94.590	Rhinopithecus_bieti
MGP_PahariEiJ_G0013082	Chd2	100	96.665	ENSRROG00000041087	-	100	96.665	Rhinopithecus_roxellana
MGP_PahariEiJ_G0013082	Chd2	100	96.718	ENSSBOG00000023754	-	100	96.718	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0013082	Chd2	100	91.186	ENSSHAG00000012513	-	100	91.349	Sarcophilus_harrisii
MGP_PahariEiJ_G0013082	Chd2	100	73.139	ENSSFOG00015023759	chd2	100	73.193	Scleropages_formosus
MGP_PahariEiJ_G0013082	Chd2	96	71.180	ENSSMAG00000001726	chd2	100	70.569	Scophthalmus_maximus
MGP_PahariEiJ_G0013082	Chd2	96	70.748	ENSSLDG00000001146	chd2	100	70.994	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0013082	Chd2	77	98.333	ENSSARG00000014112	-	82	98.333	Sorex_araneus
MGP_PahariEiJ_G0013082	Chd2	99	83.425	ENSSPUG00000011266	-	99	83.232	Sphenodon_punctatus
MGP_PahariEiJ_G0013082	Chd2	96	71.251	ENSSPAG00000016452	chd2	100	71.044	Stegastes_partitus
MGP_PahariEiJ_G0013082	Chd2	100	96.501	ENSSSCG00000002266	-	100	96.587	Sus_scrofa
MGP_PahariEiJ_G0013082	Chd2	100	88.168	ENSTGUG00000008540	-	100	88.113	Taeniopygia_guttata
MGP_PahariEiJ_G0013082	Chd2	89	68.629	ENSTRUG00000008842	chd2	92	68.096	Takifugu_rubripes
MGP_PahariEiJ_G0013082	Chd2	87	73.472	ENSTNIG00000010760	chd2	97	73.158	Tetraodon_nigroviridis
MGP_PahariEiJ_G0013082	Chd2	77	95.614	ENSTBEG00000017730	-	83	95.614	Tupaia_belangeri
MGP_PahariEiJ_G0013082	Chd2	96	93.636	ENSTTRG00000000430	-	95	93.636	Tursiops_truncatus
MGP_PahariEiJ_G0013082	Chd2	100	93.982	ENSUMAG00000000083	-	100	93.982	Ursus_maritimus
MGP_PahariEiJ_G0013082	Chd2	83	97.473	ENSVPAG00000009645	-	86	97.473	Vicugna_pacos
MGP_PahariEiJ_G0013082	Chd2	89	74.567	ENSXETG00000024129	chd2	73	81.020	Xenopus_tropicalis
MGP_PahariEiJ_G0013082	Chd2	96	69.531	ENSXCOG00000020255	chd2	99	69.592	Xiphophorus_couchianus
MGP_PahariEiJ_G0013082	Chd2	96	72.982	ENSXMAG00000002707	chd2	100	72.321	Xiphophorus_maculatus