EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0013635 (Gene tree)
Gene ID: 110331736
Gene Symbol: Tnrc6a
Alias: 2010321I05Rik|3110054G10Rik|CAGH26|D130023A07Rik|Tnrc6
Full Name: trinucleotide repeat containing 6A
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Plus strand
Length: 71850 bases
Position: chr1:92711735-92783584
Accession: 110331736
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0018790	Ago_hook	PF10427.9	3.9e-19	1	1
MGP_PahariEiJ_P0018786	Ago_hook	PF10427.9	5e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0018790	-	5236	-	MGP_PahariEiJ_P0018790	1398 (aa)	-	-
MGP_PahariEiJ_T0018791	-	4306	-	-	- (aa)	-	-
MGP_PahariEiJ_T0018792	-	939	-	-	- (aa)	-	-
MGP_PahariEiJ_T0018793	-	567	-	-	- (aa)	-	-
MGP_PahariEiJ_T0018794	-	463	-	MGP_PahariEiJ_P0018794	154 (aa)	-	-
MGP_PahariEiJ_T0018795	-	3304	-	-	- (aa)	-	-
MGP_PahariEiJ_T0018789	-	1783	-	-	- (aa)	-	-
MGP_PahariEiJ_T0018788	-	3522	-	MGP_PahariEiJ_P0018788	1173 (aa)	-	-
MGP_PahariEiJ_T0018787	-	3580	-	MGP_PahariEiJ_P0018787	35 (aa)	-	-
MGP_PahariEiJ_T0018786	-	8159	XM_021212594	MGP_PahariEiJ_P0018786	1882 (aa)	XP_021068253	-
MGP_PahariEiJ_T0018785	-	326	-	MGP_PahariEiJ_P0018785	53 (aa)	-	-
MGP_PahariEiJ_T0018784	-	655	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0013635's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0013635's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PahariEiJ_G0013635	Tnrc6a	98	44.414	MGP_PahariEiJ_G0018593	Tnrc6c	99	40.860
MGP_PahariEiJ_G0013635	Tnrc6a	99	39.323	MGP_PahariEiJ_G0020045	Tnrc6b	98	37.766

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0013635	Tnrc6a	100	95.282	ENSG00000090905	TNRC6A	100	95.000	Homo_sapiens
MGP_PahariEiJ_G0013635	Tnrc6a	100	95.139	ENSAMEG00000009333	TNRC6A	99	91.113	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0013635	Tnrc6a	100	83.440	ENSAPLG00000009978	TNRC6A	100	78.332	Anas_platyrhynchos
MGP_PahariEiJ_G0013635	Tnrc6a	99	58.740	ENSACAG00000011857	TNRC6A	99	54.698	Anolis_carolinensis
MGP_PahariEiJ_G0013635	Tnrc6a	100	95.282	ENSANAG00000025252	TNRC6A	99	94.080	Aotus_nancymaae
MGP_PahariEiJ_G0013635	Tnrc6a	99	57.782	ENSAMXG00000019919	tnrc6a	100	57.870	Astyanax_mexicanus
MGP_PahariEiJ_G0013635	Tnrc6a	100	93.996	ENSBTAG00000017999	TNRC6A	99	92.320	Bos_taurus
MGP_PahariEiJ_G0013635	Tnrc6a	100	95.211	ENSCJAG00000020677	TNRC6A	99	92.412	Callithrix_jacchus
MGP_PahariEiJ_G0013635	Tnrc6a	100	94.925	ENSCAFG00000017531	TNRC6A	99	93.237	Canis_familiaris
MGP_PahariEiJ_G0013635	Tnrc6a	100	93.424	ENSCAFG00020021160	TNRC6A	99	92.154	Canis_lupus_dingo
MGP_PahariEiJ_G0013635	Tnrc6a	99	92.373	ENSCHIG00000019448	TNRC6A	99	92.267	Capra_hircus
MGP_PahariEiJ_G0013635	Tnrc6a	100	95.282	ENSTSYG00000012711	TNRC6A	99	93.925	Carlito_syrichta
MGP_PahariEiJ_G0013635	Tnrc6a	99	93.999	ENSCPOG00000036684	TNRC6A	99	94.211	Cavia_porcellus
MGP_PahariEiJ_G0013635	Tnrc6a	100	95.211	ENSCCAG00000033664	TNRC6A	99	93.981	Cebus_capucinus
MGP_PahariEiJ_G0013635	Tnrc6a	100	93.959	ENSCATG00000019284	TNRC6A	100	93.543	Cercocebus_atys
MGP_PahariEiJ_G0013635	Tnrc6a	99	88.590	ENSCLAG00000010217	TNRC6A	99	88.959	Chinchilla_lanigera
MGP_PahariEiJ_G0013635	Tnrc6a	100	95.354	ENSCSAG00000006561	TNRC6A	99	91.667	Chlorocebus_sabaeus
MGP_PahariEiJ_G0013635	Tnrc6a	100	89.350	ENSCHOG00000009374	TNRC6A	92	86.453	Choloepus_hoffmanni
MGP_PahariEiJ_G0013635	Tnrc6a	100	79.558	ENSCPBG00000001881	TNRC6A	99	80.716	Chrysemys_picta_bellii
MGP_PahariEiJ_G0013635	Tnrc6a	100	95.354	ENSCANG00000041549	TNRC6A	99	94.083	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0013635	Tnrc6a	100	97.069	ENSCGRG00001015021	Tnrc6a	99	96.820	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0013635	Tnrc6a	99	95.818	ENSCGRG00000013351	Tnrc6a	99	95.818	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0013635	Tnrc6a	99	57.439	ENSDARG00000079688	tnrc6a	99	57.319	Danio_rerio
MGP_PahariEiJ_G0013635	Tnrc6a	100	92.877	ENSDNOG00000013989	TNRC6A	99	89.554	Dasypus_novemcinctus
MGP_PahariEiJ_G0013635	Tnrc6a	100	82.487	ENSETEG00000014658	TNRC6A	99	83.150	Echinops_telfairi
MGP_PahariEiJ_G0013635	Tnrc6a	100	94.429	ENSEASG00005017693	TNRC6A	99	93.694	Equus_asinus_asinus
MGP_PahariEiJ_G0013635	Tnrc6a	100	94.357	ENSECAG00000025056	TNRC6A	99	93.588	Equus_caballus
MGP_PahariEiJ_G0013635	Tnrc6a	100	88.143	ENSEEUG00000004530	TNRC6A	99	84.760	Erinaceus_europaeus
MGP_PahariEiJ_G0013635	Tnrc6a	100	93.853	ENSFCAG00000025236	TNRC6A	99	92.593	Felis_catus
MGP_PahariEiJ_G0013635	Tnrc6a	100	81.437	ENSFALG00000003757	TNRC6A	99	76.711	Ficedula_albicollis
MGP_PahariEiJ_G0013635	Tnrc6a	100	79.673	ENSGALG00000006068	TNRC6A	99	81.037	Gallus_gallus
MGP_PahariEiJ_G0013635	Tnrc6a	100	78.951	ENSGAGG00000023209	TNRC6A	99	80.334	Gopherus_agassizii
MGP_PahariEiJ_G0013635	Tnrc6a	100	95.282	ENSGGOG00000005137	TNRC6A	100	93.994	Gorilla_gorilla
MGP_PahariEiJ_G0013635	Tnrc6a	99	91.583	ENSHGLG00000012474	-	99	91.530	Heterocephalus_glaber_female
MGP_PahariEiJ_G0013635	Tnrc6a	99	69.478	ENSHGLG00000007368	-	93	72.819	Heterocephalus_glaber_female
MGP_PahariEiJ_G0013635	Tnrc6a	99	91.272	ENSHGLG00100012496	-	99	91.378	Heterocephalus_glaber_male
MGP_PahariEiJ_G0013635	Tnrc6a	100	94.496	ENSSTOG00000023394	TNRC6A	98	90.611	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0013635	Tnrc6a	99	71.921	ENSLACG00000006277	TNRC6A	100	67.688	Latimeria_chalumnae
MGP_PahariEiJ_G0013635	Tnrc6a	99	83.002	ENSLOCG00000005517	tnrc6a	92	83.002	Lepisosteus_oculatus
MGP_PahariEiJ_G0013635	Tnrc6a	98	92.772	ENSLAFG00000004209	TNRC6A	99	92.822	Loxodonta_africana
MGP_PahariEiJ_G0013635	Tnrc6a	100	93.959	ENSMFAG00000003824	TNRC6A	99	90.444	Macaca_fascicularis
MGP_PahariEiJ_G0013635	Tnrc6a	100	95.282	ENSMMUG00000020428	TNRC6A	99	93.872	Macaca_mulatta
MGP_PahariEiJ_G0013635	Tnrc6a	100	95.568	ENSMNEG00000034854	TNRC6A	99	93.537	Macaca_nemestrina
MGP_PahariEiJ_G0013635	Tnrc6a	100	93.888	ENSMLEG00000042737	TNRC6A	98	89.145	Mandrillus_leucophaeus
MGP_PahariEiJ_G0013635	Tnrc6a	100	82.778	ENSMGAG00000006455	TNRC6A	99	76.249	Meleagris_gallopavo
MGP_PahariEiJ_G0013635	Tnrc6a	99	96.973	ENSMAUG00000012750	Tnrc6a	99	96.973	Mesocricetus_auratus
MGP_PahariEiJ_G0013635	Tnrc6a	100	95.854	ENSMICG00000030685	TNRC6A	99	94.518	Microcebus_murinus
MGP_PahariEiJ_G0013635	Tnrc6a	99	97.076	ENSMOCG00000000152	Tnrc6a	99	97.076	Microtus_ochrogaster
MGP_PahariEiJ_G0013635	Tnrc6a	100	83.952	ENSMODG00000016348	TNRC6A	97	78.676	Monodelphis_domestica
MGP_PahariEiJ_G0013635	Tnrc6a	100	98.712	MGP_CAROLIEiJ_G0030425	Tnrc6a	100	98.712	Mus_caroli
MGP_PahariEiJ_G0013635	Tnrc6a	100	99.213	ENSMUSG00000052707	Tnrc6a	99	99.213	Mus_musculus
MGP_PahariEiJ_G0013635	Tnrc6a	100	99.070	MGP_SPRETEiJ_G0031539	Tnrc6a	100	99.070	Mus_spretus
MGP_PahariEiJ_G0013635	Tnrc6a	100	83.381	ENSMPUG00000012324	TNRC6A	100	82.550	Mustela_putorius_furo
MGP_PahariEiJ_G0013635	Tnrc6a	99	93.133	ENSMLUG00000002701	TNRC6A	100	88.508	Myotis_lucifugus
MGP_PahariEiJ_G0013635	Tnrc6a	99	94.807	ENSNGAG00000020702	Tnrc6a	99	94.966	Nannospalax_galili
MGP_PahariEiJ_G0013635	Tnrc6a	100	92.482	ENSNLEG00000011851	TNRC6A	98	92.237	Nomascus_leucogenys
MGP_PahariEiJ_G0013635	Tnrc6a	93	88.261	ENSMEUG00000015959	-	74	83.167	Notamacropus_eugenii
MGP_PahariEiJ_G0013635	Tnrc6a	95	98.881	ENSOPRG00000005819	TNRC6A	95	98.881	Ochotona_princeps
MGP_PahariEiJ_G0013635	Tnrc6a	99	88.470	ENSODEG00000012802	TNRC6A	99	88.357	Octodon_degus
MGP_PahariEiJ_G0013635	Tnrc6a	99	83.178	ENSOANG00000007672	TNRC6A	100	79.097	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0013635	Tnrc6a	100	94.000	ENSOCUG00000004325	TNRC6A	100	88.924	Oryctolagus_cuniculus
MGP_PahariEiJ_G0013635	Tnrc6a	100	95.289	ENSOGAG00000006666	TNRC6A	100	92.105	Otolemur_garnettii
MGP_PahariEiJ_G0013635	Tnrc6a	100	94.021	ENSOARG00000017950	TNRC6A	98	92.957	Ovis_aries
MGP_PahariEiJ_G0013635	Tnrc6a	100	95.211	ENSPPAG00000028379	TNRC6A	99	93.796	Pan_paniscus
MGP_PahariEiJ_G0013635	Tnrc6a	100	93.996	ENSPPRG00000005861	TNRC6A	99	92.698	Panthera_pardus
MGP_PahariEiJ_G0013635	Tnrc6a	100	93.924	ENSPTIG00000006346	TNRC6A	99	91.517	Panthera_tigris_altaica
MGP_PahariEiJ_G0013635	Tnrc6a	100	95.282	ENSPTRG00000007898	TNRC6A	99	90.942	Pan_troglodytes
MGP_PahariEiJ_G0013635	Tnrc6a	100	92.137	ENSPANG00000018523	TNRC6A	99	91.474	Papio_anubis
MGP_PahariEiJ_G0013635	Tnrc6a	95	78.161	ENSPKIG00000012859	tnrc6a	99	76.355	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0013635	Tnrc6a	100	74.381	ENSPSIG00000003965	TNRC6A	99	77.605	Pelodiscus_sinensis
MGP_PahariEiJ_G0013635	Tnrc6a	99	97.026	ENSPEMG00000016318	Tnrc6a	99	97.026	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0013635	Tnrc6a	100	86.081	ENSPCIG00000012106	TNRC6A	100	81.585	Phascolarctos_cinereus
MGP_PahariEiJ_G0013635	Tnrc6a	100	95.282	ENSPPYG00000007202	TNRC6A	99	90.862	Pongo_abelii
MGP_PahariEiJ_G0013635	Tnrc6a	95	97.938	ENSPCAG00000008260	TNRC6A	93	97.938	Procavia_capensis
MGP_PahariEiJ_G0013635	Tnrc6a	100	92.638	ENSPCOG00000010134	TNRC6A	99	92.247	Propithecus_coquereli
MGP_PahariEiJ_G0013635	Tnrc6a	99	66.695	ENSPVAG00000012066	TNRC6A	99	69.012	Pteropus_vampyrus
MGP_PahariEiJ_G0013635	Tnrc6a	99	98.277	ENSRNOG00000024737	Tnrc6a	99	97.314	Rattus_norvegicus
MGP_PahariEiJ_G0013635	Tnrc6a	100	95.354	ENSRBIG00000014222	TNRC6A	99	93.985	Rhinopithecus_bieti
MGP_PahariEiJ_G0013635	Tnrc6a	100	95.354	ENSRROG00000032360	TNRC6A	99	91.899	Rhinopithecus_roxellana
MGP_PahariEiJ_G0013635	Tnrc6a	100	95.282	ENSSBOG00000036197	TNRC6A	100	92.281	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0013635	Tnrc6a	100	81.149	ENSSHAG00000008811	TNRC6A	99	82.336	Sarcophilus_harrisii
MGP_PahariEiJ_G0013635	Tnrc6a	95	67.766	ENSSFOG00015008920	tnrc6a	100	57.871	Scleropages_formosus
MGP_PahariEiJ_G0013635	Tnrc6a	82	90.598	ENSSARG00000002479	TNRC6A	89	75.472	Sorex_araneus
MGP_PahariEiJ_G0013635	Tnrc6a	100	79.096	ENSSPUG00000010525	TNRC6A	100	77.419	Sphenodon_punctatus
MGP_PahariEiJ_G0013635	Tnrc6a	100	95.139	ENSSSCG00000038870	TNRC6A	100	95.003	Sus_scrofa
MGP_PahariEiJ_G0013635	Tnrc6a	100	78.577	ENSTGUG00000006142	TNRC6A	99	79.081	Taeniopygia_guttata
MGP_PahariEiJ_G0013635	Tnrc6a	100	92.137	ENSTBEG00000014965	TNRC6A	99	89.133	Tupaia_belangeri
MGP_PahariEiJ_G0013635	Tnrc6a	91	96.224	ENSTTRG00000002008	TNRC6A	90	91.046	Tursiops_truncatus
MGP_PahariEiJ_G0013635	Tnrc6a	94	91.532	ENSUAMG00000006656	-	93	93.244	Ursus_americanus
MGP_PahariEiJ_G0013635	Tnrc6a	100	95.211	ENSUMAG00000008274	TNRC6A	100	95.063	Ursus_maritimus
MGP_PahariEiJ_G0013635	Tnrc6a	65	84.053	ENSVPAG00000010764	-	57	84.694	Vicugna_pacos
MGP_PahariEiJ_G0013635	Tnrc6a	100	94.853	ENSVVUG00000005380	TNRC6A	99	93.295	Vulpes_vulpes
MGP_PahariEiJ_G0013635	Tnrc6a	99	67.585	ENSXETG00000030437	TNRC6A	99	63.666	Xenopus_tropicalis