EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0014366 (Gene tree)
Gene ID: 110325190
Gene Symbol: A1cf
Alias: 1810073H04Rik|ACF|apobec-1 complementation factor
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Plus strand
Length: 74285 bases
Position: chr1:143409298-143483582
Accession: 110325190
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0021528	DND1_DSRM	PF14709.7	3.7e-25	1	1
MGP_PahariEiJ_P0021528	RRM_1	PF00076.22	1.2e-39	1	3
MGP_PahariEiJ_P0021528	RRM_1	PF00076.22	1.2e-39	2	3
MGP_PahariEiJ_P0021528	RRM_1	PF00076.22	1.2e-39	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0021529	-	1854	-	MGP_PahariEiJ_P0021529	587 (aa)	XP_021058624	UPI000A30B72C
MGP_PahariEiJ_T0021528	-	3853	XM_021202957	MGP_PahariEiJ_P0021528	595 (aa)	XP_021058616	UPI000A305E65

Gene Model

Click here to download MGP_PahariEiJ_G0014366's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0014366's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PahariEiJ_G0014366	A1cf	75	58.120	MGP_PahariEiJ_G0017040	Rbm47	89	68.794
MGP_PahariEiJ_G0014366	A1cf	95	70.476	MGP_PahariEiJ_G0026544	Rbm46	88	70.476
MGP_PahariEiJ_G0014366	A1cf	52	54.221	MGP_PahariEiJ_G0028993	Hnrnpr	54	58.503
MGP_PahariEiJ_G0014366	A1cf	52	58.904	MGP_PahariEiJ_G0015376	Syncrip	64	58.904

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0014366	A1cf	100	92.773	ENSG00000148584	A1CF	100	96.517	Homo_sapiens
MGP_PahariEiJ_G0014366	A1cf	100	72.437	ENSAPOG00000008259	a1cf	100	72.437	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0014366	A1cf	100	91.261	ENSAMEG00000000523	A1CF	100	91.765	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0014366	A1cf	100	74.545	ENSACIG00000008632	a1cf	100	75.868	Amphilophus_citrinellus
MGP_PahariEiJ_G0014366	A1cf	100	73.134	ENSAOCG00000023744	a1cf	93	84.132	Amphiprion_ocellaris
MGP_PahariEiJ_G0014366	A1cf	100	73.159	ENSAPEG00000009537	a1cf	100	73.977	Amphiprion_percula
MGP_PahariEiJ_G0014366	A1cf	100	74.917	ENSATEG00000013720	a1cf	100	76.568	Anabas_testudineus
MGP_PahariEiJ_G0014366	A1cf	100	85.906	ENSAPLG00000002964	A1CF	100	85.906	Anas_platyrhynchos
MGP_PahariEiJ_G0014366	A1cf	100	82.823	ENSACAG00000015269	A1CF	100	82.823	Anolis_carolinensis
MGP_PahariEiJ_G0014366	A1cf	100	93.015	ENSANAG00000019974	A1CF	100	93.015	Aotus_nancymaae
MGP_PahariEiJ_G0014366	A1cf	100	72.351	ENSACLG00000017428	a1cf	100	75.000	Astatotilapia_calliptera
MGP_PahariEiJ_G0014366	A1cf	100	72.397	ENSAMXG00000018180	a1cf	100	72.727	Astyanax_mexicanus
MGP_PahariEiJ_G0014366	A1cf	100	92.164	ENSBTAG00000021195	A1CF	100	92.937	Bos_taurus
MGP_PahariEiJ_G0014366	A1cf	100	93.109	ENSCJAG00000005045	A1CF	100	93.109	Callithrix_jacchus
MGP_PahariEiJ_G0014366	A1cf	100	90.420	ENSCAFG00000015581	A1CF	100	91.261	Canis_familiaris
MGP_PahariEiJ_G0014366	A1cf	100	90.420	ENSCAFG00020026421	A1CF	100	91.261	Canis_lupus_dingo
MGP_PahariEiJ_G0014366	A1cf	100	91.429	ENSCHIG00000020411	A1CF	100	91.429	Capra_hircus
MGP_PahariEiJ_G0014366	A1cf	95	90.780	ENSTSYG00000001755	A1CF	100	91.697	Carlito_syrichta
MGP_PahariEiJ_G0014366	A1cf	100	81.734	ENSCAPG00000017386	A1CF	100	81.734	Cavia_aperea
MGP_PahariEiJ_G0014366	A1cf	100	91.765	ENSCPOG00000009807	A1CF	100	92.101	Cavia_porcellus
MGP_PahariEiJ_G0014366	A1cf	100	92.941	ENSCCAG00000018168	A1CF	100	92.941	Cebus_capucinus
MGP_PahariEiJ_G0014366	A1cf	100	93.015	ENSCATG00000043715	A1CF	100	93.015	Cercocebus_atys
MGP_PahariEiJ_G0014366	A1cf	100	92.450	ENSCLAG00000010424	A1CF	100	92.450	Chinchilla_lanigera
MGP_PahariEiJ_G0014366	A1cf	100	93.109	ENSCSAG00000007032	A1CF	100	93.109	Chlorocebus_sabaeus
MGP_PahariEiJ_G0014366	A1cf	98	87.113	ENSCHOG00000009089	A1CF	98	87.650	Choloepus_hoffmanni
MGP_PahariEiJ_G0014366	A1cf	100	86.074	ENSCPBG00000026464	A1CF	100	86.074	Chrysemys_picta_bellii
MGP_PahariEiJ_G0014366	A1cf	100	93.109	ENSCANG00000038032	A1CF	100	93.109	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0014366	A1cf	100	95.126	ENSCGRG00001017413	A1cf	100	95.126	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0014366	A1cf	100	94.286	ENSCGRG00000017332	A1cf	100	94.286	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0014366	A1cf	100	73.798	ENSCSEG00000002361	a1cf	100	75.456	Cynoglossus_semilaevis
MGP_PahariEiJ_G0014366	A1cf	100	74.257	ENSCVAG00000010520	a1cf	100	75.743	Cyprinodon_variegatus
MGP_PahariEiJ_G0014366	A1cf	100	77.234	ENSDARG00000002968	a1cf	100	79.089	Danio_rerio
MGP_PahariEiJ_G0014366	A1cf	100	90.924	ENSDNOG00000002829	A1CF	100	90.924	Dasypus_novemcinctus
MGP_PahariEiJ_G0014366	A1cf	82	90.942	ENSETEG00000012527	A1CF	81	90.942	Echinops_telfairi
MGP_PahariEiJ_G0014366	A1cf	100	92.295	ENSEASG00005012924	A1CF	100	92.965	Equus_asinus_asinus
MGP_PahariEiJ_G0014366	A1cf	100	91.792	ENSECAG00000010424	A1CF	100	92.462	Equus_caballus
MGP_PahariEiJ_G0014366	A1cf	78	79.521	ENSEEUG00000000013	A1CF	100	79.521	Erinaceus_europaeus
MGP_PahariEiJ_G0014366	A1cf	100	77.038	ENSELUG00000003159	a1cf	100	78.037	Esox_lucius
MGP_PahariEiJ_G0014366	A1cf	100	89.608	ENSFCAG00000011179	A1CF	100	90.801	Felis_catus
MGP_PahariEiJ_G0014366	A1cf	100	84.864	ENSFALG00000013183	A1CF	100	84.864	Ficedula_albicollis
MGP_PahariEiJ_G0014366	A1cf	100	91.652	ENSFDAG00000019371	A1CF	100	91.652	Fukomys_damarensis
MGP_PahariEiJ_G0014366	A1cf	100	68.977	ENSFHEG00000019652	a1cf	96	81.250	Fundulus_heteroclitus
MGP_PahariEiJ_G0014366	A1cf	100	71.122	ENSGMOG00000018943	a1cf	100	71.287	Gadus_morhua
MGP_PahariEiJ_G0014366	A1cf	95	84.602	ENSGALG00000003765	A1CF	97	84.602	Gallus_gallus
MGP_PahariEiJ_G0014366	A1cf	100	69.601	ENSGAFG00000014868	a1cf	100	70.598	Gambusia_affinis
MGP_PahariEiJ_G0014366	A1cf	100	73.399	ENSGACG00000010241	a1cf	100	74.426	Gasterosteus_aculeatus
MGP_PahariEiJ_G0014366	A1cf	94	85.613	ENSGAGG00000016508	A1CF	97	85.613	Gopherus_agassizii
MGP_PahariEiJ_G0014366	A1cf	100	92.605	ENSGGOG00000009670	A1CF	100	92.605	Gorilla_gorilla
MGP_PahariEiJ_G0014366	A1cf	100	73.554	ENSHBUG00000021959	a1cf	100	75.537	Haplochromis_burtoni
MGP_PahariEiJ_G0014366	A1cf	100	92.437	ENSHGLG00000008955	A1CF	100	92.437	Heterocephalus_glaber_female
MGP_PahariEiJ_G0014366	A1cf	100	91.765	ENSHGLG00100000518	A1CF	100	91.765	Heterocephalus_glaber_male
MGP_PahariEiJ_G0014366	A1cf	100	69.805	ENSHCOG00000017669	a1cf	100	72.447	Hippocampus_comes
MGP_PahariEiJ_G0014366	A1cf	89	81.343	ENSIPUG00000010367	a1cf	99	79.391	Ictalurus_punctatus
MGP_PahariEiJ_G0014366	A1cf	100	75.122	ENSKMAG00000006568	a1cf	100	75.935	Kryptolebias_marmoratus
MGP_PahariEiJ_G0014366	A1cf	99	73.563	ENSLBEG00000020994	a1cf	98	75.534	Labrus_bergylta
MGP_PahariEiJ_G0014366	A1cf	100	80.372	ENSLACG00000008061	A1CF	100	80.372	Latimeria_chalumnae
MGP_PahariEiJ_G0014366	A1cf	100	80.000	ENSLOCG00000006302	a1cf	100	80.167	Lepisosteus_oculatus
MGP_PahariEiJ_G0014366	A1cf	100	91.261	ENSLAFG00000015462	A1CF	100	91.261	Loxodonta_africana
MGP_PahariEiJ_G0014366	A1cf	100	93.015	ENSMFAG00000035948	A1CF	100	93.015	Macaca_fascicularis
MGP_PahariEiJ_G0014366	A1cf	100	93.015	ENSMMUG00000007077	A1CF	100	93.015	Macaca_mulatta
MGP_PahariEiJ_G0014366	A1cf	100	92.845	ENSMNEG00000031454	A1CF	100	92.845	Macaca_nemestrina
MGP_PahariEiJ_G0014366	A1cf	100	93.109	ENSMLEG00000037223	A1CF	100	93.109	Mandrillus_leucophaeus
MGP_PahariEiJ_G0014366	A1cf	100	72.637	ENSMAMG00000010402	a1cf	100	74.834	Mastacembelus_armatus
MGP_PahariEiJ_G0014366	A1cf	100	74.500	ENSMZEG00005013245	a1cf	100	75.500	Maylandia_zebra
MGP_PahariEiJ_G0014366	A1cf	100	84.925	ENSMGAG00000001507	A1CF	100	84.925	Meleagris_gallopavo
MGP_PahariEiJ_G0014366	A1cf	100	94.286	ENSMAUG00000007422	A1cf	100	94.286	Mesocricetus_auratus
MGP_PahariEiJ_G0014366	A1cf	100	91.356	ENSMICG00000003377	A1CF	100	92.034	Microcebus_murinus
MGP_PahariEiJ_G0014366	A1cf	100	94.790	ENSMOCG00000021536	A1cf	100	94.790	Microtus_ochrogaster
MGP_PahariEiJ_G0014366	A1cf	100	67.496	ENSMMOG00000009422	a1cf	100	69.652	Mola_mola
MGP_PahariEiJ_G0014366	A1cf	92	88.312	ENSMODG00000016478	A1CF	99	88.497	Monodelphis_domestica
MGP_PahariEiJ_G0014366	A1cf	100	72.804	ENSMALG00000012992	a1cf	100	72.804	Monopterus_albus
MGP_PahariEiJ_G0014366	A1cf	100	98.824	MGP_CAROLIEiJ_G0022873	A1cf	100	98.824	Mus_caroli
MGP_PahariEiJ_G0014366	A1cf	100	98.824	ENSMUSG00000052595	A1cf	100	98.824	Mus_musculus
MGP_PahariEiJ_G0014366	A1cf	100	98.319	MGP_SPRETEiJ_G0023792	A1cf	100	98.319	Mus_spretus
MGP_PahariEiJ_G0014366	A1cf	100	85.546	ENSMPUG00000016971	A1CF	100	86.050	Mustela_putorius_furo
MGP_PahariEiJ_G0014366	A1cf	100	90.924	ENSMLUG00000016071	A1CF	100	90.924	Myotis_lucifugus
MGP_PahariEiJ_G0014366	A1cf	100	93.950	ENSNGAG00000015136	A1cf	100	93.950	Nannospalax_galili
MGP_PahariEiJ_G0014366	A1cf	100	73.884	ENSNBRG00000001712	a1cf	100	75.868	Neolamprologus_brichardi
MGP_PahariEiJ_G0014366	A1cf	100	93.277	ENSNLEG00000012028	A1CF	100	93.277	Nomascus_leucogenys
MGP_PahariEiJ_G0014366	A1cf	94	87.027	ENSMEUG00000015909	A1CF	100	87.207	Notamacropus_eugenii
MGP_PahariEiJ_G0014366	A1cf	88	81.905	ENSOPRG00000010667	A1CF	100	81.319	Ochotona_princeps
MGP_PahariEiJ_G0014366	A1cf	100	74.215	ENSONIG00000019105	a1cf	100	75.372	Oreochromis_niloticus
MGP_PahariEiJ_G0014366	A1cf	78	87.146	ENSOANG00000007360	A1CF	99	87.146	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0014366	A1cf	100	90.816	ENSOCUG00000011587	A1CF	100	91.837	Oryctolagus_cuniculus
MGP_PahariEiJ_G0014366	A1cf	100	72.059	ENSORLG00000013342	a1cf	100	72.059	Oryzias_latipes
MGP_PahariEiJ_G0014366	A1cf	100	72.757	ENSORLG00020000586	a1cf	100	73.453	Oryzias_latipes_hni
MGP_PahariEiJ_G0014366	A1cf	100	72.594	ENSORLG00015018569	a1cf	100	73.290	Oryzias_latipes_hsok
MGP_PahariEiJ_G0014366	A1cf	100	72.637	ENSOMEG00000013531	a1cf	100	72.637	Oryzias_melastigma
MGP_PahariEiJ_G0014366	A1cf	100	90.588	ENSOGAG00000012884	A1CF	100	91.597	Otolemur_garnettii
MGP_PahariEiJ_G0014366	A1cf	100	91.429	ENSOARG00000013695	A1CF	100	91.429	Ovis_aries
MGP_PahariEiJ_G0014366	A1cf	97	90.641	ENSPPAG00000028115	A1CF	100	95.142	Pan_paniscus
MGP_PahariEiJ_G0014366	A1cf	100	89.748	ENSPPRG00000012180	A1CF	100	90.924	Panthera_pardus
MGP_PahariEiJ_G0014366	A1cf	100	89.748	ENSPTIG00000021223	A1CF	100	90.924	Panthera_tigris_altaica
MGP_PahariEiJ_G0014366	A1cf	100	92.437	ENSPTRG00000002508	A1CF	100	92.437	Pan_troglodytes
MGP_PahariEiJ_G0014366	A1cf	100	93.015	ENSPANG00000021988	A1CF	100	93.015	Papio_anubis
MGP_PahariEiJ_G0014366	A1cf	100	79.201	ENSPKIG00000025176	a1cf	100	79.201	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0014366	A1cf	100	85.714	ENSPSIG00000010318	A1CF	100	85.714	Pelodiscus_sinensis
MGP_PahariEiJ_G0014366	A1cf	88	71.567	ENSPMGG00000013359	a1cf	99	67.814	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0014366	A1cf	100	95.630	ENSPEMG00000015021	A1cf	100	95.630	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0014366	A1cf	100	86.395	ENSPCIG00000002175	A1CF	100	86.565	Phascolarctos_cinereus
MGP_PahariEiJ_G0014366	A1cf	100	74.267	ENSPFOG00000006683	a1cf	100	75.733	Poecilia_formosa
MGP_PahariEiJ_G0014366	A1cf	100	74.104	ENSPFOG00000007437	-	100	75.570	Poecilia_formosa
MGP_PahariEiJ_G0014366	A1cf	100	73.927	ENSPLAG00000001210	-	100	75.413	Poecilia_latipinna
MGP_PahariEiJ_G0014366	A1cf	100	73.927	ENSPLAG00000000026	a1cf	100	75.413	Poecilia_latipinna
MGP_PahariEiJ_G0014366	A1cf	100	66.993	ENSPMEG00000015529	-	100	68.464	Poecilia_mexicana
MGP_PahariEiJ_G0014366	A1cf	100	66.722	ENSPMEG00000000921	a1cf	100	68.212	Poecilia_mexicana
MGP_PahariEiJ_G0014366	A1cf	100	73.941	ENSPREG00000016298	a1cf	100	75.407	Poecilia_reticulata
MGP_PahariEiJ_G0014366	A1cf	100	93.015	ENSPPYG00000002819	A1CF	100	93.015	Pongo_abelii
MGP_PahariEiJ_G0014366	A1cf	79	70.763	ENSPCAG00000006463	A1CF	79	71.983	Procavia_capensis
MGP_PahariEiJ_G0014366	A1cf	100	91.611	ENSPCOG00000024172	A1CF	100	92.617	Propithecus_coquereli
MGP_PahariEiJ_G0014366	A1cf	100	73.899	ENSPNYG00000017944	a1cf	100	75.856	Pundamilia_nyererei
MGP_PahariEiJ_G0014366	A1cf	100	78.691	ENSPNAG00000007704	a1cf	100	78.691	Pygocentrus_nattereri
MGP_PahariEiJ_G0014366	A1cf	100	97.104	ENSRNOG00000033195	A1cf	100	97.104	Rattus_norvegicus
MGP_PahariEiJ_G0014366	A1cf	100	86.767	ENSRBIG00000042892	A1CF	100	91.252	Rhinopithecus_bieti
MGP_PahariEiJ_G0014366	A1cf	100	93.109	ENSRROG00000041398	A1CF	100	93.109	Rhinopithecus_roxellana
MGP_PahariEiJ_G0014366	A1cf	100	92.773	ENSSBOG00000021930	A1CF	100	92.773	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0014366	A1cf	100	86.577	ENSSHAG00000005096	A1CF	100	86.577	Sarcophilus_harrisii
MGP_PahariEiJ_G0014366	A1cf	100	78.319	ENSSFOG00015011774	a1cf	100	78.319	Scleropages_formosus
MGP_PahariEiJ_G0014366	A1cf	100	73.779	ENSSMAG00000013271	a1cf	100	74.104	Scophthalmus_maximus
MGP_PahariEiJ_G0014366	A1cf	100	74.959	ENSSDUG00000013930	a1cf	100	75.954	Seriola_dumerili
MGP_PahariEiJ_G0014366	A1cf	100	68.562	ENSSLDG00000004290	a1cf	100	69.565	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0014366	A1cf	95	81.720	ENSSARG00000005940	A1CF	96	81.720	Sorex_araneus
MGP_PahariEiJ_G0014366	A1cf	95	84.710	ENSSPUG00000006797	A1CF	95	84.710	Sphenodon_punctatus
MGP_PahariEiJ_G0014366	A1cf	100	92.101	ENSSSCG00000010431	A1CF	100	92.101	Sus_scrofa
MGP_PahariEiJ_G0014366	A1cf	100	85.284	ENSTGUG00000005090	A1CF	100	85.284	Taeniopygia_guttata
MGP_PahariEiJ_G0014366	A1cf	100	72.920	ENSTRUG00000001982	a1cf	100	72.920	Takifugu_rubripes
MGP_PahariEiJ_G0014366	A1cf	100	73.659	ENSTNIG00000003580	a1cf	100	73.659	Tetraodon_nigroviridis
MGP_PahariEiJ_G0014366	A1cf	97	84.359	ENSTTRG00000013190	A1CF	95	84.359	Tursiops_truncatus
MGP_PahariEiJ_G0014366	A1cf	100	91.141	ENSUAMG00000020065	A1CF	100	91.652	Ursus_americanus
MGP_PahariEiJ_G0014366	A1cf	100	91.092	ENSUMAG00000011162	A1CF	100	91.597	Ursus_maritimus
MGP_PahariEiJ_G0014366	A1cf	87	88.109	ENSVPAG00000006130	A1CF	86	88.109	Vicugna_pacos
MGP_PahariEiJ_G0014366	A1cf	100	91.141	ENSVVUG00000002504	A1CF	100	91.312	Vulpes_vulpes
MGP_PahariEiJ_G0014366	A1cf	100	76.167	ENSXETG00000006611	a1cf	100	76.167	Xenopus_tropicalis
MGP_PahariEiJ_G0014366	A1cf	100	75.415	ENSXCOG00000003302	a1cf	100	76.412	Xiphophorus_couchianus
MGP_PahariEiJ_G0014366	A1cf	100	75.574	ENSXMAG00000016703	a1cf	100	76.557	Xiphophorus_maculatus