EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0014588 (Gene tree)
Gene ID: 110327847
Gene Symbol: Trub1
Alias: 2610009I02Rik|9030425C13Rik
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Plus strand
Length: 38340 bases
Position: chr1:168530159-168568498
Accession: 110327847
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0022213	TruB_N	PF01509.18	4.4e-51	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0022213	-	1953	-	MGP_PahariEiJ_P0022213	338 (aa)	XP_021062750	UPI000A30DBDF

Gene Model

Click here to download MGP_PahariEiJ_G0014588's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0014588's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0014588	Trub1	99	81.089	ENSG00000165832	TRUB1	99	81.089	Homo_sapiens
MGP_PahariEiJ_G0014588	Trub1	72	67.755	ENSAPOG00000020565	trub1	91	66.932	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0014588	Trub1	89	85.809	ENSAMEG00000014931	TRUB1	99	81.197	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0014588	Trub1	73	60.976	ENSACIG00000003060	trub1	82	60.976	Amphilophus_citrinellus
MGP_PahariEiJ_G0014588	Trub1	72	67.755	ENSAOCG00000017188	trub1	89	67.480	Amphiprion_ocellaris
MGP_PahariEiJ_G0014588	Trub1	73	67.073	ENSAPEG00000015209	trub1	89	67.073	Amphiprion_percula
MGP_PahariEiJ_G0014588	Trub1	72	67.769	ENSATEG00000023291	trub1	87	67.769	Anabas_testudineus
MGP_PahariEiJ_G0014588	Trub1	81	71.533	ENSAPLG00000006808	TRUB1	98	71.533	Anas_platyrhynchos
MGP_PahariEiJ_G0014588	Trub1	80	69.004	ENSACAG00000009282	TRUB1	98	69.004	Anolis_carolinensis
MGP_PahariEiJ_G0014588	Trub1	89	87.333	ENSANAG00000022870	TRUB1	99	81.375	Aotus_nancymaae
MGP_PahariEiJ_G0014588	Trub1	75	65.079	ENSACLG00000000823	trub1	91	65.079	Astatotilapia_calliptera
MGP_PahariEiJ_G0014588	Trub1	79	63.433	ENSAMXG00000015845	trub1	89	63.433	Astyanax_mexicanus
MGP_PahariEiJ_G0014588	Trub1	89	86.093	ENSBTAG00000012955	TRUB1	100	80.114	Bos_taurus
MGP_PahariEiJ_G0014588	Trub1	99	80.857	ENSCJAG00000047815	TRUB1	99	81.143	Callithrix_jacchus
MGP_PahariEiJ_G0014588	Trub1	88	87.838	ENSCAFG00000011688	TRUB1	99	81.089	Canis_familiaris
MGP_PahariEiJ_G0014588	Trub1	89	87.043	ENSCAFG00020013237	TRUB1	99	81.375	Canis_lupus_dingo
MGP_PahariEiJ_G0014588	Trub1	89	86.424	ENSCHIG00000020884	TRUB1	90	86.424	Capra_hircus
MGP_PahariEiJ_G0014588	Trub1	89	86.379	ENSTSYG00000000446	TRUB1	99	80.571	Carlito_syrichta
MGP_PahariEiJ_G0014588	Trub1	75	76.680	ENSCAPG00000017088	TRUB1	99	76.680	Cavia_aperea
MGP_PahariEiJ_G0014588	Trub1	70	81.013	ENSCPOG00000030129	-	86	79.747	Cavia_porcellus
MGP_PahariEiJ_G0014588	Trub1	69	78.279	ENSCPOG00000040236	-	100	79.508	Cavia_porcellus
MGP_PahariEiJ_G0014588	Trub1	89	86.711	ENSCCAG00000028842	TRUB1	99	80.857	Cebus_capucinus
MGP_PahariEiJ_G0014588	Trub1	99	80.229	ENSCATG00000033431	TRUB1	99	81.375	Cercocebus_atys
MGP_PahariEiJ_G0014588	Trub1	69	79.592	ENSCLAG00000008664	TRUB1	100	79.508	Chinchilla_lanigera
MGP_PahariEiJ_G0014588	Trub1	99	80.229	ENSCSAG00000004891	TRUB1	99	81.375	Chlorocebus_sabaeus
MGP_PahariEiJ_G0014588	Trub1	100	67.143	ENSCHOG00000011931	TRUB1	86	73.179	Choloepus_hoffmanni
MGP_PahariEiJ_G0014588	Trub1	80	74.908	ENSCPBG00000003051	TRUB1	93	74.908	Chrysemys_picta_bellii
MGP_PahariEiJ_G0014588	Trub1	99	80.229	ENSCANG00000029445	TRUB1	99	81.375	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0014588	Trub1	83	79.715	ENSCGRG00001010322	-	86	73.669	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0014588	Trub1	75	87.843	ENSCGRG00001016772	-	100	76.036	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0014588	Trub1	100	82.544	ENSCGRG00000010806	Trub1	100	83.728	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0014588	Trub1	76	60.547	ENSCSEG00000011261	trub1	83	60.547	Cynoglossus_semilaevis
MGP_PahariEiJ_G0014588	Trub1	74	66.135	ENSCVAG00000008791	trub1	77	66.135	Cyprinodon_variegatus
MGP_PahariEiJ_G0014588	Trub1	78	65.019	ENSDARG00000053805	trub1	90	65.019	Danio_rerio
MGP_PahariEiJ_G0014588	Trub1	89	79.801	ENSDNOG00000001069	TRUB1	100	75.214	Dasypus_novemcinctus
MGP_PahariEiJ_G0014588	Trub1	100	80.403	ENSDORG00000010431	Trub1	87	87.417	Dipodomys_ordii
MGP_PahariEiJ_G0014588	Trub1	67	88.028	ENSETEG00000009183	TRUB1	65	85.811	Echinops_telfairi
MGP_PahariEiJ_G0014588	Trub1	88	85.953	ENSEASG00005014739	TRUB1	100	81.143	Equus_asinus_asinus
MGP_PahariEiJ_G0014588	Trub1	88	85.953	ENSECAG00000007177	TRUB1	100	81.143	Equus_caballus
MGP_PahariEiJ_G0014588	Trub1	87	74.150	ENSEEUG00000013993	TRUB1	83	73.579	Erinaceus_europaeus
MGP_PahariEiJ_G0014588	Trub1	72	68.163	ENSELUG00000000502	trub1	86	68.163	Esox_lucius
MGP_PahariEiJ_G0014588	Trub1	89	86.333	ENSFCAG00000031927	TRUB1	99	82.133	Felis_catus
MGP_PahariEiJ_G0014588	Trub1	71	71.784	ENSFALG00000002232	TRUB1	93	71.784	Ficedula_albicollis
MGP_PahariEiJ_G0014588	Trub1	58	90.863	ENSFDAG00000008140	TRUB1	81	90.863	Fukomys_damarensis
MGP_PahariEiJ_G0014588	Trub1	73	65.447	ENSFHEG00000004016	trub1	85	65.447	Fundulus_heteroclitus
MGP_PahariEiJ_G0014588	Trub1	80	70.849	ENSGALG00000009091	TRUB1	95	70.849	Gallus_gallus
MGP_PahariEiJ_G0014588	Trub1	72	64.082	ENSGAFG00000009193	trub1	86	64.082	Gambusia_affinis
MGP_PahariEiJ_G0014588	Trub1	59	65.829	ENSGACG00000015387	trub1	98	65.829	Gasterosteus_aculeatus
MGP_PahariEiJ_G0014588	Trub1	87	71.864	ENSGAGG00000009758	TRUB1	81	72.085	Gopherus_agassizii
MGP_PahariEiJ_G0014588	Trub1	99	80.802	ENSGGOG00000004583	TRUB1	99	80.802	Gorilla_gorilla
MGP_PahariEiJ_G0014588	Trub1	75	65.079	ENSHBUG00000016787	trub1	91	65.079	Haplochromis_burtoni
MGP_PahariEiJ_G0014588	Trub1	100	75.000	ENSHGLG00000015314	TRUB1	100	76.218	Heterocephalus_glaber_female
MGP_PahariEiJ_G0014588	Trub1	69	81.857	ENSHGLG00100009183	TRUB1	100	81.857	Heterocephalus_glaber_male
MGP_PahariEiJ_G0014588	Trub1	72	65.714	ENSHCOG00000017877	trub1	89	65.714	Hippocampus_comes
MGP_PahariEiJ_G0014588	Trub1	75	67.059	ENSIPUG00000017559	trub1	89	67.059	Ictalurus_punctatus
MGP_PahariEiJ_G0014588	Trub1	89	85.430	ENSSTOG00000003641	TRUB1	100	81.657	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0014588	Trub1	100	79.118	ENSJJAG00000011800	Trub1	100	79.118	Jaculus_jaculus
MGP_PahariEiJ_G0014588	Trub1	75	63.813	ENSKMAG00000006232	trub1	92	63.813	Kryptolebias_marmoratus
MGP_PahariEiJ_G0014588	Trub1	73	65.447	ENSLBEG00000026722	trub1	86	65.447	Labrus_bergylta
MGP_PahariEiJ_G0014588	Trub1	82	70.652	ENSLACG00000014885	TRUB1	92	70.652	Latimeria_chalumnae
MGP_PahariEiJ_G0014588	Trub1	80	68.382	ENSLOCG00000012979	trub1	92	68.382	Lepisosteus_oculatus
MGP_PahariEiJ_G0014588	Trub1	87	79.000	ENSLAFG00000015452	TRUB1	99	73.926	Loxodonta_africana
MGP_PahariEiJ_G0014588	Trub1	99	80.516	ENSMFAG00000031767	TRUB1	99	81.662	Macaca_fascicularis
MGP_PahariEiJ_G0014588	Trub1	99	80.229	ENSMMUG00000001902	TRUB1	99	81.375	Macaca_mulatta
MGP_PahariEiJ_G0014588	Trub1	99	75.931	ENSMNEG00000044646	TRUB1	99	77.077	Macaca_nemestrina
MGP_PahariEiJ_G0014588	Trub1	99	80.516	ENSMLEG00000042655	TRUB1	99	81.375	Mandrillus_leucophaeus
MGP_PahariEiJ_G0014588	Trub1	75	65.079	ENSMZEG00005024095	trub1	91	65.079	Maylandia_zebra
MGP_PahariEiJ_G0014588	Trub1	80	71.111	ENSMGAG00000011135	TRUB1	93	71.111	Meleagris_gallopavo
MGP_PahariEiJ_G0014588	Trub1	100	82.249	ENSMAUG00000011101	Trub1	100	82.249	Mesocricetus_auratus
MGP_PahariEiJ_G0014588	Trub1	100	80.516	ENSMICG00000016324	TRUB1	100	81.948	Microcebus_murinus
MGP_PahariEiJ_G0014588	Trub1	100	82.840	ENSMOCG00000017759	Trub1	100	82.840	Microtus_ochrogaster
MGP_PahariEiJ_G0014588	Trub1	79	82.836	ENSMODG00000009676	TRUB1	77	81.295	Monodelphis_domestica
MGP_PahariEiJ_G0014588	Trub1	100	97.041	MGP_CAROLIEiJ_G0023100	Trub1	100	97.041	Mus_caroli
MGP_PahariEiJ_G0014588	Trub1	100	96.450	ENSMUSG00000025086	Trub1	100	96.450	Mus_musculus
MGP_PahariEiJ_G0014588	Trub1	100	96.746	MGP_SPRETEiJ_G0024021	Trub1	100	96.746	Mus_spretus
MGP_PahariEiJ_G0014588	Trub1	89	87.708	ENSMPUG00000003556	TRUB1	99	82.521	Mustela_putorius_furo
MGP_PahariEiJ_G0014588	Trub1	95	82.812	ENSMLUG00000017686	TRUB1	99	79.532	Myotis_lucifugus
MGP_PahariEiJ_G0014588	Trub1	100	80.172	ENSNGAG00000018682	Trub1	100	79.885	Nannospalax_galili
MGP_PahariEiJ_G0014588	Trub1	73	65.854	ENSNBRG00000023393	trub1	88	65.854	Neolamprologus_brichardi
MGP_PahariEiJ_G0014588	Trub1	88	86.242	ENSNLEG00000016345	TRUB1	99	80.516	Nomascus_leucogenys
MGP_PahariEiJ_G0014588	Trub1	59	88.557	ENSMEUG00000006603	TRUB1	78	86.256	Notamacropus_eugenii
MGP_PahariEiJ_G0014588	Trub1	89	80.132	ENSOPRG00000009371	TRUB1	100	75.581	Ochotona_princeps
MGP_PahariEiJ_G0014588	Trub1	88	82.215	ENSODEG00000010854	TRUB1	85	82.215	Octodon_degus
MGP_PahariEiJ_G0014588	Trub1	73	65.447	ENSONIG00000007249	trub1	92	64.683	Oreochromis_niloticus
MGP_PahariEiJ_G0014588	Trub1	81	76.923	ENSOANG00000001556	TRUB1	93	75.801	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0014588	Trub1	89	81.457	ENSOCUG00000009456	TRUB1	87	81.457	Oryctolagus_cuniculus
MGP_PahariEiJ_G0014588	Trub1	71	67.635	ENSORLG00000029719	trub1	86	67.635	Oryzias_latipes
MGP_PahariEiJ_G0014588	Trub1	71	67.220	ENSORLG00020016767	trub1	85	67.220	Oryzias_latipes_hni
MGP_PahariEiJ_G0014588	Trub1	71	67.635	ENSORLG00015014728	trub1	86	67.635	Oryzias_latipes_hsok
MGP_PahariEiJ_G0014588	Trub1	77	64.865	ENSOMEG00000014556	trub1	89	64.961	Oryzias_melastigma
MGP_PahariEiJ_G0014588	Trub1	89	87.417	ENSOGAG00000015895	TRUB1	100	82.000	Otolemur_garnettii
MGP_PahariEiJ_G0014588	Trub1	88	84.488	ENSOARG00000015591	TRUB1	100	77.841	Ovis_aries
MGP_PahariEiJ_G0014588	Trub1	99	81.089	ENSPPAG00000043645	TRUB1	99	81.089	Pan_paniscus
MGP_PahariEiJ_G0014588	Trub1	89	86.000	ENSPPRG00000007096	TRUB1	99	81.844	Panthera_pardus
MGP_PahariEiJ_G0014588	Trub1	89	86.333	ENSPTIG00000006378	TRUB1	99	82.133	Panthera_tigris_altaica
MGP_PahariEiJ_G0014588	Trub1	99	81.089	ENSPTRG00000002964	TRUB1	99	81.089	Pan_troglodytes
MGP_PahariEiJ_G0014588	Trub1	99	79.656	ENSPANG00000020712	TRUB1	99	80.802	Papio_anubis
MGP_PahariEiJ_G0014588	Trub1	51	67.630	ENSPKIG00000003852	trub1	74	67.630	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0014588	Trub1	86	70.242	ENSPSIG00000012877	TRUB1	93	73.063	Pelodiscus_sinensis
MGP_PahariEiJ_G0014588	Trub1	72	64.082	ENSPMGG00000000075	trub1	88	64.082	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0014588	Trub1	100	81.471	ENSPEMG00000011156	Trub1	100	82.353	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0014588	Trub1	85	79.021	ENSPCIG00000009729	TRUB1	79	78.425	Phascolarctos_cinereus
MGP_PahariEiJ_G0014588	Trub1	75	65.079	ENSPFOG00000009950	trub1	91	65.079	Poecilia_formosa
MGP_PahariEiJ_G0014588	Trub1	75	65.079	ENSPLAG00000013855	trub1	87	65.079	Poecilia_latipinna
MGP_PahariEiJ_G0014588	Trub1	75	65.079	ENSPMEG00000009064	trub1	90	65.079	Poecilia_mexicana
MGP_PahariEiJ_G0014588	Trub1	75	65.476	ENSPREG00000003343	trub1	90	65.476	Poecilia_reticulata
MGP_PahariEiJ_G0014588	Trub1	96	81.250	ENSPPYG00000002676	TRUB1	99	80.516	Pongo_abelii
MGP_PahariEiJ_G0014588	Trub1	89	74.000	ENSPCAG00000008427	TRUB1	85	73.754	Procavia_capensis
MGP_PahariEiJ_G0014588	Trub1	89	81.126	ENSPCOG00000024360	TRUB1	100	76.791	Propithecus_coquereli
MGP_PahariEiJ_G0014588	Trub1	63	91.981	ENSPVAG00000007575	TRUB1	100	84.791	Pteropus_vampyrus
MGP_PahariEiJ_G0014588	Trub1	75	65.079	ENSPNYG00000018614	trub1	91	65.079	Pundamilia_nyererei
MGP_PahariEiJ_G0014588	Trub1	76	58.594	ENSPNAG00000006881	trub1	83	58.594	Pygocentrus_nattereri
MGP_PahariEiJ_G0014588	Trub1	100	91.789	ENSRNOG00000017321	Trub1	100	90.909	Rattus_norvegicus
MGP_PahariEiJ_G0014588	Trub1	99	71.060	ENSRBIG00000033423	TRUB1	99	71.633	Rhinopithecus_bieti
MGP_PahariEiJ_G0014588	Trub1	99	80.802	ENSRROG00000033902	TRUB1	99	81.375	Rhinopithecus_roxellana
MGP_PahariEiJ_G0014588	Trub1	96	82.738	ENSSBOG00000024237	TRUB1	99	81.143	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0014588	Trub1	75	76.953	ENSSHAG00000009346	TRUB1	86	76.953	Sarcophilus_harrisii
MGP_PahariEiJ_G0014588	Trub1	72	67.901	ENSSFOG00015022124	trub1	83	67.901	Scleropages_formosus
MGP_PahariEiJ_G0014588	Trub1	73	66.260	ENSSMAG00000001020	trub1	88	66.260	Scophthalmus_maximus
MGP_PahariEiJ_G0014588	Trub1	71	66.667	ENSSDUG00000016414	trub1	88	66.667	Seriola_dumerili
MGP_PahariEiJ_G0014588	Trub1	71	67.083	ENSSLDG00000015486	trub1	88	67.073	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0014588	Trub1	84	73.852	ENSSPUG00000001642	TRUB1	97	73.852	Sphenodon_punctatus
MGP_PahariEiJ_G0014588	Trub1	73	67.886	ENSSPAG00000001217	trub1	88	67.886	Stegastes_partitus
MGP_PahariEiJ_G0014588	Trub1	100	78.286	ENSSSCG00000010653	TRUB1	100	78.286	Sus_scrofa
MGP_PahariEiJ_G0014588	Trub1	80	72.862	ENSTGUG00000010971	TRUB1	96	71.956	Taeniopygia_guttata
MGP_PahariEiJ_G0014588	Trub1	75	72.727	ENSTBEG00000002880	TRUB1	99	72.727	Tupaia_belangeri
MGP_PahariEiJ_G0014588	Trub1	64	91.204	ENSTTRG00000005767	TRUB1	100	82.443	Tursiops_truncatus
MGP_PahariEiJ_G0014588	Trub1	89	87.708	ENSUAMG00000024876	TRUB1	99	82.521	Ursus_americanus
MGP_PahariEiJ_G0014588	Trub1	87	88.475	ENSUMAG00000002411	TRUB1	99	83.284	Ursus_maritimus
MGP_PahariEiJ_G0014588	Trub1	100	79.143	ENSVPAG00000005507	TRUB1	100	79.429	Vicugna_pacos
MGP_PahariEiJ_G0014588	Trub1	99	80.347	ENSVVUG00000010085	TRUB1	83	82.081	Vulpes_vulpes
MGP_PahariEiJ_G0014588	Trub1	80	64.338	ENSXETG00000023828	trub1	98	64.338	Xenopus_tropicalis
MGP_PahariEiJ_G0014588	Trub1	72	64.754	ENSXCOG00000017847	trub1	86	64.754	Xiphophorus_couchianus
MGP_PahariEiJ_G0014588	Trub1	75	64.286	ENSXMAG00000014701	trub1	90	64.286	Xiphophorus_maculatus