EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0014819 (Gene tree)
Gene ID: 110327953
Gene Symbol: Rpusd4
Alias: 2410001E19Rik
Full Name: RNA pseudouridine synthase D4
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Plus strand
Length: 10237 bases
Position: chr10:30080529-30090765
Accession: 110327953
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0022856	PseudoU_synth_2	PF00849.22	9.1e-34	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0022856	-	1805	XM_021207264	MGP_PahariEiJ_P0022856	377 (aa)	XP_021062923	UPI000A30562B
MGP_PahariEiJ_T0022857	-	780	-	-	- (aa)	-	-
MGP_PahariEiJ_T0022858	-	495	-	-	- (aa)	-	-
MGP_PahariEiJ_T0022859	-	522	-	MGP_PahariEiJ_P0022859	34 (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0014819's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0014819's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PahariEiJ_G0014819	Rpusd4	68	35.401	MGP_PahariEiJ_G0022476	Rpusd3	76	35.401

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0014819	Rpusd4	100	78.780	ENSG00000165526	RPUSD4	100	78.780	Homo_sapiens
MGP_PahariEiJ_G0014819	Rpusd4	87	50.301	ENSAPOG00000011024	rpusd4	83	50.301	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0014819	Rpusd4	80	86.290	ENSAMEG00000005953	-	100	86.290	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0014819	Rpusd4	100	78.515	ENSAMEG00000000127	-	100	78.515	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0014819	Rpusd4	84	49.533	ENSACIG00000003533	rpusd4	94	49.533	Amphilophus_citrinellus
MGP_PahariEiJ_G0014819	Rpusd4	90	49.709	ENSAOCG00000015409	rpusd4	85	49.709	Amphiprion_ocellaris
MGP_PahariEiJ_G0014819	Rpusd4	90	50.000	ENSAPEG00000018935	rpusd4	85	50.000	Amphiprion_percula
MGP_PahariEiJ_G0014819	Rpusd4	89	50.588	ENSATEG00000008059	rpusd4	84	50.588	Anabas_testudineus
MGP_PahariEiJ_G0014819	Rpusd4	73	60.573	ENSAPLG00000013250	RPUSD4	99	59.322	Anas_platyrhynchos
MGP_PahariEiJ_G0014819	Rpusd4	97	60.054	ENSACAG00000000189	RPUSD4	100	60.054	Anolis_carolinensis
MGP_PahariEiJ_G0014819	Rpusd4	99	80.645	ENSANAG00000024050	RPUSD4	100	80.645	Aotus_nancymaae
MGP_PahariEiJ_G0014819	Rpusd4	91	51.009	ENSACLG00000020996	rpusd4	87	51.009	Astatotilapia_calliptera
MGP_PahariEiJ_G0014819	Rpusd4	95	48.396	ENSAMXG00000031479	rpusd4	97	48.396	Astyanax_mexicanus
MGP_PahariEiJ_G0014819	Rpusd4	100	75.132	ENSBTAG00000020900	RPUSD4	100	75.132	Bos_taurus
MGP_PahariEiJ_G0014819	Rpusd4	98	80.270	ENSCJAG00000042850	RPUSD4	93	80.270	Callithrix_jacchus
MGP_PahariEiJ_G0014819	Rpusd4	100	79.101	ENSCAFG00000010488	RPUSD4	100	79.101	Canis_familiaris
MGP_PahariEiJ_G0014819	Rpusd4	100	79.101	ENSCAFG00020010621	RPUSD4	100	79.101	Canis_lupus_dingo
MGP_PahariEiJ_G0014819	Rpusd4	100	75.989	ENSCHIG00000009975	RPUSD4	100	75.989	Capra_hircus
MGP_PahariEiJ_G0014819	Rpusd4	100	81.698	ENSTSYG00000008456	RPUSD4	100	81.698	Carlito_syrichta
MGP_PahariEiJ_G0014819	Rpusd4	68	80.233	ENSCAPG00000006040	RPUSD4	100	80.233	Cavia_aperea
MGP_PahariEiJ_G0014819	Rpusd4	100	78.515	ENSCPOG00000014971	RPUSD4	100	78.515	Cavia_porcellus
MGP_PahariEiJ_G0014819	Rpusd4	99	80.914	ENSCCAG00000027838	RPUSD4	100	80.914	Cebus_capucinus
MGP_PahariEiJ_G0014819	Rpusd4	100	80.637	ENSCATG00000041570	RPUSD4	100	80.637	Cercocebus_atys
MGP_PahariEiJ_G0014819	Rpusd4	100	80.106	ENSCLAG00000016553	RPUSD4	100	80.106	Chinchilla_lanigera
MGP_PahariEiJ_G0014819	Rpusd4	100	80.371	ENSCSAG00000002274	RPUSD4	100	80.371	Chlorocebus_sabaeus
MGP_PahariEiJ_G0014819	Rpusd4	75	82.686	ENSCHOG00000010249	RPUSD4	100	82.686	Choloepus_hoffmanni
MGP_PahariEiJ_G0014819	Rpusd4	75	69.123	ENSCPBG00000011175	RPUSD4	98	69.123	Chrysemys_picta_bellii
MGP_PahariEiJ_G0014819	Rpusd4	70	43.015	ENSCSAVG00000000872	-	53	43.015	Ciona_savignyi
MGP_PahariEiJ_G0014819	Rpusd4	100	79.841	ENSCANG00000039684	RPUSD4	100	79.841	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0014819	Rpusd4	100	90.186	ENSCGRG00001024141	Rpusd4	100	90.186	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0014819	Rpusd4	100	90.186	ENSCGRG00000014415	Rpusd4	100	90.186	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0014819	Rpusd4	88	49.704	ENSCVAG00000008761	rpusd4	86	49.704	Cyprinodon_variegatus
MGP_PahariEiJ_G0014819	Rpusd4	88	50.000	ENSCVAG00000000392	rpusd4	95	50.000	Cyprinodon_variegatus
MGP_PahariEiJ_G0014819	Rpusd4	85	50.613	ENSDARG00000012674	rpusd4	91	50.613	Danio_rerio
MGP_PahariEiJ_G0014819	Rpusd4	100	78.249	ENSDNOG00000020026	RPUSD4	100	78.249	Dasypus_novemcinctus
MGP_PahariEiJ_G0014819	Rpusd4	100	79.310	ENSDORG00000016717	Rpusd4	100	79.310	Dipodomys_ordii
MGP_PahariEiJ_G0014819	Rpusd4	99	78.249	ENSETEG00000013953	RPUSD4	99	78.249	Echinops_telfairi
MGP_PahariEiJ_G0014819	Rpusd4	100	80.637	ENSEASG00005022982	RPUSD4	100	80.637	Equus_asinus_asinus
MGP_PahariEiJ_G0014819	Rpusd4	100	80.637	ENSECAG00000000557	RPUSD4	100	80.637	Equus_caballus
MGP_PahariEiJ_G0014819	Rpusd4	80	82.609	ENSEEUG00000014036	RPUSD4	80	82.609	Erinaceus_europaeus
MGP_PahariEiJ_G0014819	Rpusd4	91	52.958	ENSELUG00000008075	rpusd4	93	52.958	Esox_lucius
MGP_PahariEiJ_G0014819	Rpusd4	100	78.780	ENSFCAG00000029789	RPUSD4	100	78.780	Felis_catus
MGP_PahariEiJ_G0014819	Rpusd4	89	58.407	ENSFALG00000005171	RPUSD4	99	58.407	Ficedula_albicollis
MGP_PahariEiJ_G0014819	Rpusd4	100	80.902	ENSFDAG00000014307	RPUSD4	100	80.902	Fukomys_damarensis
MGP_PahariEiJ_G0014819	Rpusd4	94	47.778	ENSFHEG00000004329	rpusd4	91	47.778	Fundulus_heteroclitus
MGP_PahariEiJ_G0014819	Rpusd4	85	51.070	ENSGMOG00000017726	rpusd4	96	51.070	Gadus_morhua
MGP_PahariEiJ_G0014819	Rpusd4	92	54.775	ENSGALG00000024326	RPUSD4	100	55.556	Gallus_gallus
MGP_PahariEiJ_G0014819	Rpusd4	87	48.673	ENSGAFG00000021559	rpusd4	86	48.673	Gambusia_affinis
MGP_PahariEiJ_G0014819	Rpusd4	85	49.693	ENSGACG00000001657	rpusd4	97	50.357	Gasterosteus_aculeatus
MGP_PahariEiJ_G0014819	Rpusd4	95	62.117	ENSGAGG00000000132	RPUSD4	98	62.117	Gopherus_agassizii
MGP_PahariEiJ_G0014819	Rpusd4	100	78.249	ENSGGOG00000016494	RPUSD4	100	78.249	Gorilla_gorilla
MGP_PahariEiJ_G0014819	Rpusd4	91	51.009	ENSHBUG00000022838	rpusd4	87	51.009	Haplochromis_burtoni
MGP_PahariEiJ_G0014819	Rpusd4	100	80.371	ENSHGLG00000002285	RPUSD4	100	80.371	Heterocephalus_glaber_female
MGP_PahariEiJ_G0014819	Rpusd4	100	80.371	ENSHGLG00100006385	RPUSD4	100	80.371	Heterocephalus_glaber_male
MGP_PahariEiJ_G0014819	Rpusd4	90	49.275	ENSHCOG00000006612	rpusd4	87	49.275	Hippocampus_comes
MGP_PahariEiJ_G0014819	Rpusd4	86	52.744	ENSIPUG00000023879	rusd4	85	52.744	Ictalurus_punctatus
MGP_PahariEiJ_G0014819	Rpusd4	97	81.319	ENSSTOG00000025280	RPUSD4	100	81.319	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0014819	Rpusd4	99	84.409	ENSJJAG00000018673	Rpusd4	100	84.409	Jaculus_jaculus
MGP_PahariEiJ_G0014819	Rpusd4	85	53.067	ENSKMAG00000021805	rpusd4	84	53.067	Kryptolebias_marmoratus
MGP_PahariEiJ_G0014819	Rpusd4	86	51.829	ENSLBEG00000020394	rpusd4	91	51.829	Labrus_bergylta
MGP_PahariEiJ_G0014819	Rpusd4	85	61.420	ENSLACG00000011028	RPUSD4	94	57.105	Latimeria_chalumnae
MGP_PahariEiJ_G0014819	Rpusd4	86	47.130	ENSLOCG00000003124	rpusd4	88	47.130	Lepisosteus_oculatus
MGP_PahariEiJ_G0014819	Rpusd4	100	79.310	ENSLAFG00000005211	RPUSD4	100	79.310	Loxodonta_africana
MGP_PahariEiJ_G0014819	Rpusd4	100	80.637	ENSMFAG00000039513	RPUSD4	100	80.637	Macaca_fascicularis
MGP_PahariEiJ_G0014819	Rpusd4	100	80.371	ENSMMUG00000007933	RPUSD4	100	80.371	Macaca_mulatta
MGP_PahariEiJ_G0014819	Rpusd4	100	80.371	ENSMNEG00000027414	RPUSD4	100	80.371	Macaca_nemestrina
MGP_PahariEiJ_G0014819	Rpusd4	100	80.371	ENSMLEG00000042461	RPUSD4	100	80.371	Mandrillus_leucophaeus
MGP_PahariEiJ_G0014819	Rpusd4	87	48.955	ENSMAMG00000023839	rpusd4	86	48.955	Mastacembelus_armatus
MGP_PahariEiJ_G0014819	Rpusd4	91	51.009	ENSMZEG00005011999	rpusd4	87	51.009	Maylandia_zebra
MGP_PahariEiJ_G0014819	Rpusd4	84	57.500	ENSMGAG00000000840	RPUSD4	99	58.025	Meleagris_gallopavo
MGP_PahariEiJ_G0014819	Rpusd4	100	87.798	ENSMAUG00000010280	Rpusd4	100	87.798	Mesocricetus_auratus
MGP_PahariEiJ_G0014819	Rpusd4	100	80.371	ENSMICG00000015979	RPUSD4	95	85.669	Microcebus_murinus
MGP_PahariEiJ_G0014819	Rpusd4	100	86.472	ENSMOCG00000000661	Rpusd4	100	86.472	Microtus_ochrogaster
MGP_PahariEiJ_G0014819	Rpusd4	82	52.381	ENSMMOG00000021731	rpusd4	93	52.381	Mola_mola
MGP_PahariEiJ_G0014819	Rpusd4	86	75.153	ENSMODG00000004521	RPUSD4	84	75.153	Monodelphis_domestica
MGP_PahariEiJ_G0014819	Rpusd4	80	50.974	ENSMALG00000005839	rpusd4	97	49.689	Monopterus_albus
MGP_PahariEiJ_G0014819	Rpusd4	100	96.552	MGP_CAROLIEiJ_G0031954	Rpusd4	100	96.552	Mus_caroli
MGP_PahariEiJ_G0014819	Rpusd4	100	95.756	ENSMUSG00000032044	Rpusd4	100	95.756	Mus_musculus
MGP_PahariEiJ_G0014819	Rpusd4	100	95.756	MGP_SPRETEiJ_G0033078	Rpusd4	100	95.756	Mus_spretus
MGP_PahariEiJ_G0014819	Rpusd4	98	77.089	ENSMPUG00000006608	RPUSD4	99	77.089	Mustela_putorius_furo
MGP_PahariEiJ_G0014819	Rpusd4	67	84.646	ENSMLUG00000029348	-	100	84.646	Myotis_lucifugus
MGP_PahariEiJ_G0014819	Rpusd4	89	83.383	ENSMLUG00000017328	-	96	79.178	Myotis_lucifugus
MGP_PahariEiJ_G0014819	Rpusd4	99	83.511	ENSNGAG00000020847	Rpusd4	99	83.511	Nannospalax_galili
MGP_PahariEiJ_G0014819	Rpusd4	86	52.584	ENSNBRG00000005207	rpusd4	95	52.584	Neolamprologus_brichardi
MGP_PahariEiJ_G0014819	Rpusd4	100	80.902	ENSNLEG00000007465	RPUSD4	100	80.902	Nomascus_leucogenys
MGP_PahariEiJ_G0014819	Rpusd4	97	70.055	ENSMEUG00000004370	RPUSD4	98	70.055	Notamacropus_eugenii
MGP_PahariEiJ_G0014819	Rpusd4	70	59.245	ENSOPRG00000013141	-	100	59.245	Ochotona_princeps
MGP_PahariEiJ_G0014819	Rpusd4	100	78.780	ENSODEG00000004577	RPUSD4	100	78.780	Octodon_degus
MGP_PahariEiJ_G0014819	Rpusd4	93	51.253	ENSONIG00000018879	rpusd4	96	51.253	Oreochromis_niloticus
MGP_PahariEiJ_G0014819	Rpusd4	77	68.814	ENSOANG00000007247	RPUSD4	100	66.773	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0014819	Rpusd4	100	80.159	ENSOCUG00000017039	RPUSD4	100	80.159	Oryctolagus_cuniculus
MGP_PahariEiJ_G0014819	Rpusd4	90	49.565	ENSORLG00000002750	rpusd4	94	49.565	Oryzias_latipes
MGP_PahariEiJ_G0014819	Rpusd4	76	52.560	ENSORLG00020002044	rpusd4	73	52.560	Oryzias_latipes_hni
MGP_PahariEiJ_G0014819	Rpusd4	90	49.296	ENSORLG00015020034	rpusd4	88	49.296	Oryzias_latipes_hsok
MGP_PahariEiJ_G0014819	Rpusd4	91	49.284	ENSOMEG00000004861	rpusd4	86	49.284	Oryzias_melastigma
MGP_PahariEiJ_G0014819	Rpusd4	100	78.571	ENSOGAG00000008922	RPUSD4	100	78.571	Otolemur_garnettii
MGP_PahariEiJ_G0014819	Rpusd4	95	78.552	ENSOARG00000012238	RPUSD4	98	76.819	Ovis_aries
MGP_PahariEiJ_G0014819	Rpusd4	100	79.045	ENSPPAG00000042883	RPUSD4	93	79.045	Pan_paniscus
MGP_PahariEiJ_G0014819	Rpusd4	100	78.780	ENSPPRG00000003081	RPUSD4	100	78.780	Panthera_pardus
MGP_PahariEiJ_G0014819	Rpusd4	100	78.780	ENSPTIG00000012059	RPUSD4	100	78.780	Panthera_tigris_altaica
MGP_PahariEiJ_G0014819	Rpusd4	95	82.073	ENSPTRG00000004454	RPUSD4	95	82.073	Pan_troglodytes
MGP_PahariEiJ_G0014819	Rpusd4	100	80.637	ENSPANG00000015040	RPUSD4	100	80.637	Papio_anubis
MGP_PahariEiJ_G0014819	Rpusd4	88	58.084	ENSPKIG00000023986	rpusd4	85	58.084	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0014819	Rpusd4	79	67.000	ENSPSIG00000014268	RPUSD4	95	67.000	Pelodiscus_sinensis
MGP_PahariEiJ_G0014819	Rpusd4	86	50.152	ENSPMGG00000002806	rpusd4	91	50.000	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0014819	Rpusd4	100	80.637	ENSPEMG00000000278	Rpusd4	100	80.637	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0014819	Rpusd4	81	45.000	ENSPMAG00000008183	rpusd4	98	45.000	Petromyzon_marinus
MGP_PahariEiJ_G0014819	Rpusd4	97	69.780	ENSPCIG00000010212	RPUSD4	100	69.780	Phascolarctos_cinereus
MGP_PahariEiJ_G0014819	Rpusd4	88	49.415	ENSPFOG00000019030	rpusd4	89	49.415	Poecilia_formosa
MGP_PahariEiJ_G0014819	Rpusd4	88	50.000	ENSPLAG00000016848	rpusd4	86	50.000	Poecilia_latipinna
MGP_PahariEiJ_G0014819	Rpusd4	88	48.824	ENSPMEG00000017534	rpusd4	86	48.824	Poecilia_mexicana
MGP_PahariEiJ_G0014819	Rpusd4	85	49.699	ENSPREG00000005689	rpusd4	85	49.699	Poecilia_reticulata
MGP_PahariEiJ_G0014819	Rpusd4	100	79.576	ENSPPYG00000004043	RPUSD4	100	79.576	Pongo_abelii
MGP_PahariEiJ_G0014819	Rpusd4	80	78.378	ENSPCAG00000000753	RPUSD4	82	78.378	Procavia_capensis
MGP_PahariEiJ_G0014819	Rpusd4	98	74.663	ENSPCOG00000020694	RPUSD4	100	74.663	Propithecus_coquereli
MGP_PahariEiJ_G0014819	Rpusd4	100	80.902	ENSPVAG00000000988	RPUSD4	100	80.902	Pteropus_vampyrus
MGP_PahariEiJ_G0014819	Rpusd4	91	49.856	ENSPNYG00000009652	rpusd4	87	49.856	Pundamilia_nyererei
MGP_PahariEiJ_G0014819	Rpusd4	88	51.796	ENSPNAG00000012264	rpusd4	88	51.796	Pygocentrus_nattereri
MGP_PahariEiJ_G0014819	Rpusd4	100	92.838	ENSRNOG00000011567	Rpusd4	100	92.838	Rattus_norvegicus
MGP_PahariEiJ_G0014819	Rpusd4	100	80.902	ENSRBIG00000034842	RPUSD4	100	80.902	Rhinopithecus_bieti
MGP_PahariEiJ_G0014819	Rpusd4	100	80.902	ENSRROG00000039753	RPUSD4	100	80.902	Rhinopithecus_roxellana
MGP_PahariEiJ_G0014819	Rpusd4	99	80.376	ENSSBOG00000030413	RPUSD4	100	80.376	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0014819	Rpusd4	80	74.172	ENSSHAG00000008304	RPUSD4	100	74.172	Sarcophilus_harrisii
MGP_PahariEiJ_G0014819	Rpusd4	93	55.462	ENSSFOG00015006203	rpusd4	96	55.742	Scleropages_formosus
MGP_PahariEiJ_G0014819	Rpusd4	91	50.144	ENSSMAG00000020978	rpusd4	90	50.144	Scophthalmus_maximus
MGP_PahariEiJ_G0014819	Rpusd4	89	48.387	ENSSDUG00000013399	rpusd4	89	48.387	Seriola_dumerili
MGP_PahariEiJ_G0014819	Rpusd4	89	48.680	ENSSLDG00000023507	rpusd4	89	48.680	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0014819	Rpusd4	91	61.561	ENSSPUG00000001401	RPUSD4	96	62.139	Sphenodon_punctatus
MGP_PahariEiJ_G0014819	Rpusd4	89	50.588	ENSSPAG00000012163	rpusd4	87	50.588	Stegastes_partitus
MGP_PahariEiJ_G0014819	Rpusd4	99	79.625	ENSSSCG00000015233	RPUSD4	99	79.625	Sus_scrofa
MGP_PahariEiJ_G0014819	Rpusd4	79	61.000	ENSTGUG00000000773	RPUSD4	100	61.000	Taeniopygia_guttata
MGP_PahariEiJ_G0014819	Rpusd4	86	50.909	ENSTRUG00000012283	rpusd4	84	50.909	Takifugu_rubripes
MGP_PahariEiJ_G0014819	Rpusd4	86	50.000	ENSTNIG00000014676	rpusd4	84	50.000	Tetraodon_nigroviridis
MGP_PahariEiJ_G0014819	Rpusd4	100	78.249	ENSTTRG00000001555	RPUSD4	100	78.249	Tursiops_truncatus
MGP_PahariEiJ_G0014819	Rpusd4	100	77.984	ENSUMAG00000002219	RPUSD4	100	77.984	Ursus_maritimus
MGP_PahariEiJ_G0014819	Rpusd4	70	82.264	ENSVPAG00000001066	RPUSD4	100	82.264	Vicugna_pacos
MGP_PahariEiJ_G0014819	Rpusd4	100	78.836	ENSVVUG00000020101	RPUSD4	100	78.836	Vulpes_vulpes
MGP_PahariEiJ_G0014819	Rpusd4	87	49.852	ENSXCOG00000004676	rpusd4	88	49.555	Xiphophorus_couchianus
MGP_PahariEiJ_G0014819	Rpusd4	86	50.000	ENSXMAG00000023351	rpusd4	85	50.000	Xiphophorus_maculatus