EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
MGP_PahariEiJ_G0015404 (Gene tree)
Gene ID
110327930
Gene Symbol
Xrn1
Alias
Dhm2|mXrn1
Full Name
5'-3' exoribonuclease 1
Gene Type
protein_coding
Species
Mus_pahari
Status
putative
Strand
Plus strand
Length
106712 bases
Position
chr10:89408043-89514754
Accession
110327930
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
MGP_PahariEiJ_P0024781XRN_NPF03159.182.8e-9611
MGP_PahariEiJ_P0024776XRN_NPF03159.185.9e-9611
MGP_PahariEiJ_P0024777XRN_NPF03159.185.9e-9611
MGP_PahariEiJ_P0024778XRN_NPF03159.188.9e-1311
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
MGP_PahariEiJ_T0024779-3367--- (aa)--
MGP_PahariEiJ_T0024778-357-MGP_PahariEiJ_P002477840 (aa)-UPI000462120E
MGP_PahariEiJ_T0024777-10039-MGP_PahariEiJ_P00247771718 (aa)XP_021062879UPI000A3128B1
MGP_PahariEiJ_T0024776-5484-MGP_PahariEiJ_P00247761718 (aa)XP_021062879UPI000A3128B1
MGP_PahariEiJ_T0024780-6222--- (aa)--
MGP_PahariEiJ_T0024781-3074-MGP_PahariEiJ_P0024781968 (aa)--
MGP_PahariEiJ_T0024782-3606--- (aa)--
MGP_PahariEiJ_T0024783-862--- (aa)--
MGP_PahariEiJ_T0024784-2507--- (aa)--
Gene Model
Click here to download MGP_PahariEiJ_G0015404's gene model file
Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0015404's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
MGP_PahariEiJ_G0015404Xrn19066.667MGP_PahariEiJ_G0025843Xrn27138.473
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
MGP_PahariEiJ_G0015404Xrn1100100.000ENSG00000114127XRN110098.788Homo_sapiens
MGP_PahariEiJ_G0015404Xrn110090.000ENSAPOG00000000622xrn19476.695Acanthochromis_polyacanthus
MGP_PahariEiJ_G0015404Xrn110097.500ENSAMEG00000012538XRN110088.324Ailuropoda_melanoleuca
MGP_PahariEiJ_G0015404Xrn110087.805ENSACIG00000001057xrn19872.023Amphilophus_citrinellus
MGP_PahariEiJ_G0015404Xrn110092.500ENSAOCG00000014097xrn19871.040Amphiprion_ocellaris
MGP_PahariEiJ_G0015404Xrn110092.500ENSAPEG00000006620xrn19172.303Amphiprion_percula
MGP_PahariEiJ_G0015404Xrn110092.500ENSATEG00000009752xrn19970.883Anabas_testudineus
MGP_PahariEiJ_G0015404Xrn110097.500ENSAPLG00000004905XRN110074.259Anas_platyrhynchos
MGP_PahariEiJ_G0015404Xrn110097.500ENSACAG00000004985XRN110071.775Anolis_carolinensis
MGP_PahariEiJ_G0015404Xrn1100100.000ENSANAG00000029013XRN19994.086Aotus_nancymaae
MGP_PahariEiJ_G0015404Xrn110090.000ENSACLG00000004806xrn19960.860Astatotilapia_calliptera
MGP_PahariEiJ_G0015404Xrn110095.000ENSAMXG00000019370xrn19594.175Astyanax_mexicanus
MGP_PahariEiJ_G0015404Xrn110097.500ENSBTAG00000011524XRN110085.419Bos_taurus
MGP_PahariEiJ_G0015404Xrn110067.500WBGene00012730xrn-18438.265Caenorhabditis_elegans
MGP_PahariEiJ_G0015404Xrn1100100.000ENSCJAG00000001872XRN110086.482Callithrix_jacchus
MGP_PahariEiJ_G0015404Xrn110097.500ENSCAFG00000007783XRN110088.215Canis_familiaris
MGP_PahariEiJ_G0015404Xrn110097.500ENSCAFG00020009120XRN19992.791Canis_lupus_dingo
MGP_PahariEiJ_G0015404Xrn1100100.000ENSCHIG00000019192XRN19987.580Capra_hircus
MGP_PahariEiJ_G0015404Xrn1100100.000ENSTSYG00000002705XRN110086.836Carlito_syrichta
MGP_PahariEiJ_G0015404Xrn110097.500ENSCAPG00000004604-9975.622Cavia_aperea
MGP_PahariEiJ_G0015404Xrn153100.000ENSCPOG00000035199-100100.000Cavia_porcellus
MGP_PahariEiJ_G0015404Xrn1100100.000ENSCCAG00000034800XRN19995.880Cebus_capucinus
MGP_PahariEiJ_G0015404Xrn1100100.000ENSCATG00000041794XRN110086.655Cercocebus_atys
MGP_PahariEiJ_G0015404Xrn1100100.000ENSCLAG00000001451XRN19994.612Chinchilla_lanigera
MGP_PahariEiJ_G0015404Xrn1100100.000ENSCSAG00000011265XRN110086.009Chlorocebus_sabaeus
MGP_PahariEiJ_G0015404Xrn16098.701ENSCHOG00000013961-6298.701Choloepus_hoffmanni
MGP_PahariEiJ_G0015404Xrn110085.000ENSCING00000001334-9570.652Ciona_intestinalis
MGP_PahariEiJ_G0015404Xrn110085.000ENSCSAVG00000008584-8751.093Ciona_savignyi
MGP_PahariEiJ_G0015404Xrn1100100.000ENSCANG00000037495XRN19995.880Colobus_angolensis_palliatus
MGP_PahariEiJ_G0015404Xrn1100100.000ENSCGRG00001019411Xrn19997.940Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0015404Xrn1100100.000ENSCGRG00000012464Xrn19997.940Cricetulus_griseus_crigri
MGP_PahariEiJ_G0015404Xrn110092.500ENSCSEG00000021285xrn19495.192Cynoglossus_semilaevis
MGP_PahariEiJ_G0015404Xrn110092.500ENSCVAG00000013089xrn19972.198Cyprinodon_variegatus
MGP_PahariEiJ_G0015404Xrn110092.500ENSDARG00000091652xrn19880.550Danio_rerio
MGP_PahariEiJ_G0015404Xrn153100.000ENSDNOG00000034202-10098.058Dasypus_novemcinctus
MGP_PahariEiJ_G0015404Xrn1100100.000ENSDORG00000013833Xrn110085.087Dipodomys_ordii
MGP_PahariEiJ_G0015404Xrn19568.421FBgn0020261pcm7639.522Drosophila_melanogaster
MGP_PahariEiJ_G0015404Xrn1100100.000ENSETEG00000003978XRN18896.774Echinops_telfairi
MGP_PahariEiJ_G0015404Xrn1100100.000ENSEASG00005002687XRN19995.087Equus_asinus_asinus
MGP_PahariEiJ_G0015404Xrn1100100.000ENSECAG00000008301XRN110085.313Equus_caballus
MGP_PahariEiJ_G0015404Xrn1100100.000ENSEEUG00000011323XRN19281.525Erinaceus_europaeus
MGP_PahariEiJ_G0015404Xrn110092.500ENSELUG00000000169xrn110061.478Esox_lucius
MGP_PahariEiJ_G0015404Xrn110097.500ENSFCAG00000027589XRN19994.286Felis_catus
MGP_PahariEiJ_G0015404Xrn110095.000ENSFALG00000007021XRN110073.172Ficedula_albicollis
MGP_PahariEiJ_G0015404Xrn110097.500ENSFDAG00000020494XRN19993.978Fukomys_damarensis
MGP_PahariEiJ_G0015404Xrn15069.647ENSFHEG00000017356-9968.866Fundulus_heteroclitus
MGP_PahariEiJ_G0015404Xrn153100.000ENSFHEG00000017255-10095.146Fundulus_heteroclitus
MGP_PahariEiJ_G0015404Xrn110095.000ENSGMOG00000006396xrn18467.438Gadus_morhua
MGP_PahariEiJ_G0015404Xrn110095.000ENSGALG00000002706XRN110073.536Gallus_gallus
MGP_PahariEiJ_G0015404Xrn153100.000ENSGAFG00000006293-10094.175Gambusia_affinis
MGP_PahariEiJ_G0015404Xrn110092.500ENSGACG00000014328xrn110060.775Gasterosteus_aculeatus
MGP_PahariEiJ_G0015404Xrn110090.000ENSGAGG00000017535XRN19976.733Gopherus_agassizii
MGP_PahariEiJ_G0015404Xrn110097.500ENSGGOG00000008047XRN110086.424Gorilla_gorilla
MGP_PahariEiJ_G0015404Xrn110087.805ENSHBUG00000005908xrn19873.306Haplochromis_burtoni
MGP_PahariEiJ_G0015404Xrn1100100.000ENSHGLG00000014476XRN110094.421Heterocephalus_glaber_female
MGP_PahariEiJ_G0015404Xrn1100100.000ENSHGLG00100015130XRN110094.421Heterocephalus_glaber_male
MGP_PahariEiJ_G0015404Xrn16087.500ENSHCOG00000013992-9096.117Hippocampus_comes
MGP_PahariEiJ_G0015404Xrn110090.000ENSHCOG00000014062xrn19970.720Hippocampus_comes
MGP_PahariEiJ_G0015404Xrn110092.500ENSIPUG00000015229xrn19963.064Ictalurus_punctatus
MGP_PahariEiJ_G0015404Xrn1100100.000ENSSTOG00000013552XRN19996.197Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0015404Xrn1100100.000ENSJJAG00000010863Xrn19994.049Jaculus_jaculus
MGP_PahariEiJ_G0015404Xrn110090.000ENSKMAG00000021356xrn19474.841Kryptolebias_marmoratus
MGP_PahariEiJ_G0015404Xrn110095.000ENSLBEG00000018656xrn19796.117Labrus_bergylta
MGP_PahariEiJ_G0015404Xrn110097.500ENSLACG00000009020XRN110069.011Latimeria_chalumnae
MGP_PahariEiJ_G0015404Xrn110095.000ENSLOCG00000007944xrn110064.492Lepisosteus_oculatus
MGP_PahariEiJ_G0015404Xrn1100100.000ENSLAFG00000015426XRN110093.826Loxodonta_africana
MGP_PahariEiJ_G0015404Xrn1100100.000ENSMFAG00000032599XRN110086.713Macaca_fascicularis
MGP_PahariEiJ_G0015404Xrn1100100.000ENSMMUG00000014038XRN110086.713Macaca_mulatta
MGP_PahariEiJ_G0015404Xrn1100100.000ENSMNEG00000034217XRN110086.540Macaca_nemestrina
MGP_PahariEiJ_G0015404Xrn1100100.000ENSMLEG00000041349-9995.374Mandrillus_leucophaeus
MGP_PahariEiJ_G0015404Xrn110090.000ENSMAMG00000013219xrn19477.113Mastacembelus_armatus
MGP_PahariEiJ_G0015404Xrn110090.000ENSMZEG00005015099xrn19960.690Maylandia_zebra
MGP_PahariEiJ_G0015404Xrn110095.000ENSMGAG00000006333XRN110073.008Meleagris_gallopavo
MGP_PahariEiJ_G0015404Xrn153100.000ENSMAUG00000014268-97100.000Mesocricetus_auratus
MGP_PahariEiJ_G0015404Xrn110097.500ENSMICG00000048948XRN196100.000Microcebus_murinus
MGP_PahariEiJ_G0015404Xrn1100100.000ENSMOCG00000008665Xrn19996.355Microtus_ochrogaster
MGP_PahariEiJ_G0015404Xrn15385.714ENSMMOG00000020896-9667.587Mola_mola
MGP_PahariEiJ_G0015404Xrn110092.500ENSMODG00000021236XRN110077.117Monodelphis_domestica
MGP_PahariEiJ_G0015404Xrn110090.000ENSMALG00000004098xrn110057.044Monopterus_albus
MGP_PahariEiJ_G0015404Xrn1100100.000MGP_CAROLIEiJ_G0032535Xrn1100100.000Mus_caroli
MGP_PahariEiJ_G0015404Xrn1100100.000ENSMUSG00000032410Xrn1100100.000Mus_musculus
MGP_PahariEiJ_G0015404Xrn1100100.000MGP_SPRETEiJ_G0033678Xrn1100100.000Mus_spretus
MGP_PahariEiJ_G0015404Xrn110097.500ENSMPUG00000012040XRN110086.009Mustela_putorius_furo
MGP_PahariEiJ_G0015404Xrn1100100.000ENSMLUG00000016885XRN110086.393Myotis_lucifugus
MGP_PahariEiJ_G0015404Xrn1100100.000ENSNGAG00000023964Xrn110091.909Nannospalax_galili
MGP_PahariEiJ_G0015404Xrn153100.000ENSNBRG00000001531-9995.146Neolamprologus_brichardi
MGP_PahariEiJ_G0015404Xrn1100100.000ENSNLEG00000004726XRN110086.424Nomascus_leucogenys
MGP_PahariEiJ_G0015404Xrn17198.969ENSMEUG00000014473-7399.029Notamacropus_eugenii
MGP_PahariEiJ_G0015404Xrn110097.500ENSOPRG00000007337-7883.040Ochotona_princeps
MGP_PahariEiJ_G0015404Xrn153100.000ENSODEG00000008804-100100.000Octodon_degus
MGP_PahariEiJ_G0015404Xrn110090.000ENSONIG00000016673xrn19964.208Oreochromis_niloticus
MGP_PahariEiJ_G0015404Xrn18586.061ENSOANG00000006735XRN110075.078Ornithorhynchus_anatinus
MGP_PahariEiJ_G0015404Xrn110097.500ENSOCUG00000001861XRN110086.468Oryctolagus_cuniculus
MGP_PahariEiJ_G0015404Xrn110092.500ENSORLG00000013005xrn110060.159Oryzias_latipes
MGP_PahariEiJ_G0015404Xrn110092.500ENSORLG00020005559xrn19772.552Oryzias_latipes_hni
MGP_PahariEiJ_G0015404Xrn110092.500ENSORLG00015022523xrn18972.209Oryzias_latipes_hsok
MGP_PahariEiJ_G0015404Xrn110092.500ENSOMEG00000015397xrn19972.861Oryzias_melastigma
MGP_PahariEiJ_G0015404Xrn1100100.000ENSOGAG00000000170XRN110083.429Otolemur_garnettii
MGP_PahariEiJ_G0015404Xrn1100100.000ENSOARG00000006343XRN19987.241Ovis_aries
MGP_PahariEiJ_G0015404Xrn110097.500ENSPPAG00000010180XRN110086.416Pan_paniscus
MGP_PahariEiJ_G0015404Xrn110097.500ENSPPRG00000007125XRN110086.490Panthera_pardus
MGP_PahariEiJ_G0015404Xrn110097.500ENSPTIG00000021081XRN110086.432Panthera_tigris_altaica
MGP_PahariEiJ_G0015404Xrn110097.500ENSPTRG00000015482XRN110086.532Pan_troglodytes
MGP_PahariEiJ_G0015404Xrn1100100.000ENSPANG00000010638XRN110086.597Papio_anubis
MGP_PahariEiJ_G0015404Xrn153100.000ENSPKIG00000011903-7996.117Paramormyrops_kingsleyae
MGP_PahariEiJ_G0015404Xrn110095.000ENSPSIG00000018050XRN110074.900Pelodiscus_sinensis
MGP_PahariEiJ_G0015404Xrn110095.000ENSPMGG00000002648xrn19878.022Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0015404Xrn1100100.000ENSPEMG00000020610Xrn19997.147Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0015404Xrn110097.500ENSPMAG00000002975xrn19178.161Petromyzon_marinus
MGP_PahariEiJ_G0015404Xrn110092.500ENSPCIG00000028735XRN19988.413Phascolarctos_cinereus
MGP_PahariEiJ_G0015404Xrn110090.000ENSPFOG00000013932xrn19763.323Poecilia_formosa
MGP_PahariEiJ_G0015404Xrn110090.000ENSPLAG00000021653xrn19763.314Poecilia_latipinna
MGP_PahariEiJ_G0015404Xrn110090.000ENSPMEG00000003076xrn19563.312Poecilia_mexicana
MGP_PahariEiJ_G0015404Xrn110090.000ENSPREG00000021147xrn19969.479Poecilia_reticulata
MGP_PahariEiJ_G0015404Xrn1100100.000ENSPPYG00000014172XRN110085.608Pongo_abelii
MGP_PahariEiJ_G0015404Xrn110095.000ENSPCAG00000005638XRN19679.208Procavia_capensis
MGP_PahariEiJ_G0015404Xrn1100100.000ENSPCOG00000013089XRN19995.246Propithecus_coquereli
MGP_PahariEiJ_G0015404Xrn110097.500ENSPVAG00000016265XRN19689.861Pteropus_vampyrus
MGP_PahariEiJ_G0015404Xrn110090.000ENSPNYG00000010570xrn19870.929Pundamilia_nyererei
MGP_PahariEiJ_G0015404Xrn110095.000ENSPNAG00000023531xrn19960.729Pygocentrus_nattereri
MGP_PahariEiJ_G0015404Xrn1100100.000ENSRNOG00000042951Xrn110093.631Rattus_norvegicus
MGP_PahariEiJ_G0015404Xrn1100100.000ENSRBIG00000041227XRN110085.962Rhinopithecus_bieti
MGP_PahariEiJ_G0015404Xrn1100100.000ENSRROG00000033764-100100.000Rhinopithecus_roxellana
MGP_PahariEiJ_G0015404Xrn110070.000YGL173CXRN17554.223Saccharomyces_cerevisiae
MGP_PahariEiJ_G0015404Xrn1100100.000ENSSBOG00000029561XRN110086.424Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0015404Xrn110092.500ENSSHAG00000016207XRN110077.908Sarcophilus_harrisii
MGP_PahariEiJ_G0015404Xrn110092.500ENSSFOG00015024211xrn110061.419Scleropages_formosus
MGP_PahariEiJ_G0015404Xrn110095.000ENSSMAG00000016534xrn19972.191Scophthalmus_maximus
MGP_PahariEiJ_G0015404Xrn110092.500ENSSDUG00000010306xrn19772.327Seriola_dumerili
MGP_PahariEiJ_G0015404Xrn110092.500ENSSLDG00000021543xrn19971.565Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0015404Xrn110097.500ENSSARG00000007741-8182.420Sorex_araneus
MGP_PahariEiJ_G0015404Xrn153100.000ENSSPUG00000010754-10096.117Sphenodon_punctatus
MGP_PahariEiJ_G0015404Xrn18860.526ENSSPAG00000009856-9676.829Stegastes_partitus
MGP_PahariEiJ_G0015404Xrn110097.500ENSTGUG00000008498XRN110074.812Taeniopygia_guttata
MGP_PahariEiJ_G0015404Xrn110090.000ENSTRUG00000004895xrn19775.949Takifugu_rubripes
MGP_PahariEiJ_G0015404Xrn110087.805ENSTNIG00000017615xrn110057.793Tetraodon_nigroviridis
MGP_PahariEiJ_G0015404Xrn110097.500ENSTBEG00000003256XRN18986.124Tupaia_belangeri
MGP_PahariEiJ_G0015404Xrn1100100.000ENSTTRG00000012914XRN110081.698Tursiops_truncatus
MGP_PahariEiJ_G0015404Xrn110097.500ENSUAMG00000001608XRN19991.822Ursus_americanus
MGP_PahariEiJ_G0015404Xrn110097.500ENSUMAG00000013625XRN110088.799Ursus_maritimus
MGP_PahariEiJ_G0015404Xrn1100100.000ENSVPAG00000004690XRN110082.913Vicugna_pacos
MGP_PahariEiJ_G0015404Xrn110097.500ENSVVUG00000024461XRN19995.404Vulpes_vulpes
MGP_PahariEiJ_G0015404Xrn110095.000ENSXETG00000000619xrn19988.542Xenopus_tropicalis
MGP_PahariEiJ_G0015404Xrn110090.000ENSXCOG00000007917xrn110059.234Xiphophorus_couchianus
MGP_PahariEiJ_G0015404Xrn110090.000ENSXMAG00000018320xrn19871.394Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us