EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0016172 (Gene tree)
Gene ID: 110329518
Gene Symbol: Parn
Alias: 1200003I18Rik|DAN
Full Name: poly(A)-specific ribonuclease
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Minus strand
Length: 130433 bases
Position: chr12:9522233-9652665
Accession: 110329518
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0027821	R3H	PF01424.22	5e-06	1	1
MGP_PahariEiJ_P0027821	RNA_bind	PF08675.11	3.8e-33	1	1
MGP_PahariEiJ_P0027821	CAF1	PF04857.20	1.3e-87	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0027821	-	2947	XM_021209166	MGP_PahariEiJ_P0027821	624 (aa)	XP_021064825	UPI000A30921D

Gene Model

Click here to download MGP_PahariEiJ_G0016172's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0016172's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0016172	Parn	100	86.385	ENSG00000140694	PARN	100	96.610	Homo_sapiens
MGP_PahariEiJ_G0016172	Parn	100	85.446	ENSAMEG00000011208	PARN	100	85.446	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0016172	Parn	88	71.071	ENSACIG00000000619	parn	85	71.071	Amphilophus_citrinellus
MGP_PahariEiJ_G0016172	Parn	86	74.317	ENSAOCG00000003465	parn	80	74.317	Amphiprion_ocellaris
MGP_PahariEiJ_G0016172	Parn	78	73.333	ENSAPEG00000010661	parn	95	73.333	Amphiprion_percula
MGP_PahariEiJ_G0016172	Parn	91	72.837	ENSATEG00000004661	parn	83	72.837	Anabas_testudineus
MGP_PahariEiJ_G0016172	Parn	99	79.779	ENSAPLG00000013914	PARN	99	79.779	Anas_platyrhynchos
MGP_PahariEiJ_G0016172	Parn	100	75.229	ENSACAG00000004973	PARN	100	75.229	Anolis_carolinensis
MGP_PahariEiJ_G0016172	Parn	100	85.290	ENSANAG00000031516	PARN	100	96.610	Aotus_nancymaae
MGP_PahariEiJ_G0016172	Parn	91	73.010	ENSACLG00000004742	parn	84	73.010	Astatotilapia_calliptera
MGP_PahariEiJ_G0016172	Parn	84	75.518	ENSAMXG00000012390	parn	87	73.823	Astyanax_mexicanus
MGP_PahariEiJ_G0016172	Parn	100	83.072	ENSBTAG00000018097	PARN	100	84.749	Bos_taurus
MGP_PahariEiJ_G0016172	Parn	100	85.603	ENSCJAG00000015866	PARN	100	96.610	Callithrix_jacchus
MGP_PahariEiJ_G0016172	Parn	100	84.953	ENSCAFG00000018795	PARN	100	84.953	Canis_familiaris
MGP_PahariEiJ_G0016172	Parn	100	85.266	ENSCAFG00020024126	PARN	100	85.266	Canis_lupus_dingo
MGP_PahariEiJ_G0016172	Parn	100	85.893	ENSCHIG00000018143	PARN	100	85.893	Capra_hircus
MGP_PahariEiJ_G0016172	Parn	74	59.667	ENSCAPG00000007984	PARN	78	59.667	Cavia_aperea
MGP_PahariEiJ_G0016172	Parn	100	84.013	ENSCPOG00000002263	PARN	100	84.013	Cavia_porcellus
MGP_PahariEiJ_G0016172	Parn	100	85.603	ENSCCAG00000030367	PARN	100	96.610	Cebus_capucinus
MGP_PahariEiJ_G0016172	Parn	100	79.747	ENSCATG00000041368	PARN	100	96.610	Cercocebus_atys
MGP_PahariEiJ_G0016172	Parn	100	84.326	ENSCLAG00000015406	PARN	99	84.326	Chinchilla_lanigera
MGP_PahariEiJ_G0016172	Parn	100	86.385	ENSCSAG00000008142	PARN	100	86.385	Chlorocebus_sabaeus
MGP_PahariEiJ_G0016172	Parn	99	68.938	ENSCHOG00000007014	PARN	100	68.938	Choloepus_hoffmanni
MGP_PahariEiJ_G0016172	Parn	85	81.801	ENSCPBG00000006609	PARN	94	82.308	Chrysemys_picta_bellii
MGP_PahariEiJ_G0016172	Parn	81	43.633	ENSCING00000010142	-	99	43.633	Ciona_intestinalis
MGP_PahariEiJ_G0016172	Parn	100	75.725	ENSCANG00000028849	-	100	96.610	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0016172	Parn	100	92.320	ENSCGRG00001012096	Parn	100	92.320	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0016172	Parn	100	92.320	ENSCGRG00000004939	Parn	100	92.320	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0016172	Parn	91	69.686	ENSCSEG00000002064	parn	100	60.181	Cynoglossus_semilaevis
MGP_PahariEiJ_G0016172	Parn	85	74.816	ENSCVAG00000014848	parn	79	74.816	Cyprinodon_variegatus
MGP_PahariEiJ_G0016172	Parn	84	72.420	ENSDARG00000102634	parn	100	60.185	Danio_rerio
MGP_PahariEiJ_G0016172	Parn	100	85.580	ENSDNOG00000000833	PARN	98	88.309	Dasypus_novemcinctus
MGP_PahariEiJ_G0016172	Parn	74	84.030	ENSETEG00000014828	-	69	84.030	Echinops_telfairi
MGP_PahariEiJ_G0016172	Parn	100	86.520	ENSEASG00005011400	PARN	100	86.520	Equus_asinus_asinus
MGP_PahariEiJ_G0016172	Parn	100	86.677	ENSECAG00000017792	PARN	100	86.677	Equus_caballus
MGP_PahariEiJ_G0016172	Parn	86	74.661	ENSEEUG00000010370	PARN	86	74.661	Erinaceus_europaeus
MGP_PahariEiJ_G0016172	Parn	90	71.429	ENSELUG00000013139	parn	75	71.429	Esox_lucius
MGP_PahariEiJ_G0016172	Parn	100	85.580	ENSFCAG00000044961	PARN	100	96.610	Felis_catus
MGP_PahariEiJ_G0016172	Parn	99	79.239	ENSFALG00000003911	PARN	98	79.239	Ficedula_albicollis
MGP_PahariEiJ_G0016172	Parn	58	31.806	ENSFALG00000012081	PNLDC1	70	31.806	Ficedula_albicollis
MGP_PahariEiJ_G0016172	Parn	100	84.169	ENSFDAG00000009234	PARN	100	84.169	Fukomys_damarensis
MGP_PahariEiJ_G0016172	Parn	86	67.321	ENSFHEG00000013738	parn	92	74.576	Fundulus_heteroclitus
MGP_PahariEiJ_G0016172	Parn	86	73.665	ENSGMOG00000003231	parn	99	73.665	Gadus_morhua
MGP_PahariEiJ_G0016172	Parn	100	78.997	ENSGALG00000003091	PARN	100	78.997	Gallus_gallus
MGP_PahariEiJ_G0016172	Parn	90	72.049	ENSGAFG00000011061	parn	83	72.049	Gambusia_affinis
MGP_PahariEiJ_G0016172	Parn	100	67.874	ENSGACG00000019501	parn	100	67.874	Gasterosteus_aculeatus
MGP_PahariEiJ_G0016172	Parn	51	78.221	ENSGAGG00000023281	PARN	83	78.221	Gopherus_agassizii
MGP_PahariEiJ_G0016172	Parn	97	86.312	ENSGGOG00000025224	PARN	100	96.610	Gorilla_gorilla
MGP_PahariEiJ_G0016172	Parn	91	73.010	ENSHBUG00000017906	parn	92	73.070	Haplochromis_burtoni
MGP_PahariEiJ_G0016172	Parn	100	84.639	ENSHGLG00000010886	PARN	100	84.639	Heterocephalus_glaber_female
MGP_PahariEiJ_G0016172	Parn	100	84.639	ENSHGLG00100014659	PARN	100	84.639	Heterocephalus_glaber_male
MGP_PahariEiJ_G0016172	Parn	83	71.834	ENSHCOG00000008683	parn	91	71.834	Hippocampus_comes
MGP_PahariEiJ_G0016172	Parn	89	61.296	ENSIPUG00000012401	parn	84	61.296	Ictalurus_punctatus
MGP_PahariEiJ_G0016172	Parn	100	86.050	ENSSTOG00000007519	PARN	100	86.050	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0016172	Parn	100	86.846	ENSJJAG00000023049	Parn	100	86.846	Jaculus_jaculus
MGP_PahariEiJ_G0016172	Parn	89	72.743	ENSKMAG00000009462	parn	82	72.251	Kryptolebias_marmoratus
MGP_PahariEiJ_G0016172	Parn	91	72.097	ENSLBEG00000009167	parn	89	72.097	Labrus_bergylta
MGP_PahariEiJ_G0016172	Parn	79	76.786	ENSLACG00000004207	PARN	100	75.236	Latimeria_chalumnae
MGP_PahariEiJ_G0016172	Parn	92	74.527	ENSLOCG00000000715	parn	85	74.527	Lepisosteus_oculatus
MGP_PahariEiJ_G0016172	Parn	100	86.054	ENSLAFG00000015036	PARN	100	86.054	Loxodonta_africana
MGP_PahariEiJ_G0016172	Parn	100	81.406	ENSMFAG00000044852	PARN	100	96.610	Macaca_fascicularis
MGP_PahariEiJ_G0016172	Parn	100	86.072	ENSMMUG00000018849	PARN	100	96.610	Macaca_mulatta
MGP_PahariEiJ_G0016172	Parn	100	86.228	ENSMNEG00000045108	PARN	100	96.610	Macaca_nemestrina
MGP_PahariEiJ_G0016172	Parn	100	86.385	ENSMLEG00000031743	PARN	100	96.610	Mandrillus_leucophaeus
MGP_PahariEiJ_G0016172	Parn	89	72.408	ENSMAMG00000006939	parn	82	72.408	Mastacembelus_armatus
MGP_PahariEiJ_G0016172	Parn	91	73.010	ENSMZEG00005013590	parn	95	72.261	Maylandia_zebra
MGP_PahariEiJ_G0016172	Parn	95	79.276	ENSMGAG00000001004	PARN	95	79.276	Meleagris_gallopavo
MGP_PahariEiJ_G0016172	Parn	100	86.256	ENSMAUG00000008025	Parn	100	86.256	Mesocricetus_auratus
MGP_PahariEiJ_G0016172	Parn	100	87.461	ENSMICG00000016053	PARN	100	98.305	Microcebus_murinus
MGP_PahariEiJ_G0016172	Parn	78	94.251	ENSMOCG00000022211	Parn	100	94.251	Microtus_ochrogaster
MGP_PahariEiJ_G0016172	Parn	100	65.463	ENSMMOG00000011333	parn	100	65.463	Mola_mola
MGP_PahariEiJ_G0016172	Parn	78	88.105	ENSMODG00000004915	PARN	99	88.105	Monodelphis_domestica
MGP_PahariEiJ_G0016172	Parn	84	75.978	ENSMALG00000019426	parn	91	75.978	Monopterus_albus
MGP_PahariEiJ_G0016172	Parn	100	96.635	MGP_CAROLIEiJ_G0020466	Parn	100	96.635	Mus_caroli
MGP_PahariEiJ_G0016172	Parn	100	96.635	ENSMUSG00000022685	Parn	100	96.635	Mus_musculus
MGP_PahariEiJ_G0016172	Parn	51	31.595	ENSMUSG00000073460	Pnldc1	97	30.462	Mus_musculus
MGP_PahariEiJ_G0016172	Parn	100	96.635	MGP_SPRETEiJ_G0021361	Parn	100	96.635	Mus_spretus
MGP_PahariEiJ_G0016172	Parn	100	85.893	ENSMPUG00000014464	PARN	100	85.893	Mustela_putorius_furo
MGP_PahariEiJ_G0016172	Parn	78	88.462	ENSMLUG00000005414	PARN	100	88.462	Myotis_lucifugus
MGP_PahariEiJ_G0016172	Parn	87	72.924	ENSNBRG00000006805	parn	90	74.719	Neolamprologus_brichardi
MGP_PahariEiJ_G0016172	Parn	100	86.072	ENSNLEG00000010241	PARN	100	96.610	Nomascus_leucogenys
MGP_PahariEiJ_G0016172	Parn	91	69.167	ENSMEUG00000008178	-	91	69.167	Notamacropus_eugenii
MGP_PahariEiJ_G0016172	Parn	99	80.824	ENSOPRG00000012187	PARN	100	80.824	Ochotona_princeps
MGP_PahariEiJ_G0016172	Parn	100	77.760	ENSODEG00000001617	PARN	100	77.760	Octodon_degus
MGP_PahariEiJ_G0016172	Parn	100	68.000	ENSONIG00000000151	parn	100	68.000	Oreochromis_niloticus
MGP_PahariEiJ_G0016172	Parn	60	79.740	ENSOANG00000020155	-	97	80.526	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0016172	Parn	99	85.039	ENSOCUG00000000322	PARN	100	85.039	Oryctolagus_cuniculus
MGP_PahariEiJ_G0016172	Parn	95	69.269	ENSORLG00020010313	parn	100	63.881	Oryzias_latipes_hni
MGP_PahariEiJ_G0016172	Parn	95	68.771	ENSORLG00015000300	parn	100	63.433	Oryzias_latipes_hsok
MGP_PahariEiJ_G0016172	Parn	100	63.650	ENSOMEG00000019555	parn	100	63.798	Oryzias_melastigma
MGP_PahariEiJ_G0016172	Parn	78	88.391	ENSOGAG00000014626	PARN	100	88.391	Otolemur_garnettii
MGP_PahariEiJ_G0016172	Parn	78	90.688	ENSOARG00000007574	PARN	100	90.688	Ovis_aries
MGP_PahariEiJ_G0016172	Parn	100	86.072	ENSPPAG00000031438	PARN	100	96.610	Pan_paniscus
MGP_PahariEiJ_G0016172	Parn	100	85.580	ENSPPRG00000018583	PARN	100	96.610	Panthera_pardus
MGP_PahariEiJ_G0016172	Parn	100	85.423	ENSPTIG00000012135	PARN	100	96.610	Panthera_tigris_altaica
MGP_PahariEiJ_G0016172	Parn	100	86.072	ENSPTRG00000007792	PARN	100	96.610	Pan_troglodytes
MGP_PahariEiJ_G0016172	Parn	100	83.099	ENSPANG00000020099	PARN	100	96.610	Papio_anubis
MGP_PahariEiJ_G0016172	Parn	91	72.222	ENSPKIG00000022807	parn	91	67.802	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0016172	Parn	95	81.384	ENSPSIG00000014804	PARN	100	79.549	Pelodiscus_sinensis
MGP_PahariEiJ_G0016172	Parn	81	75.244	ENSPMGG00000014431	parn	80	69.550	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0016172	Parn	100	90.064	ENSPEMG00000018439	Parn	100	90.064	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0016172	Parn	82	65.134	ENSPMAG00000003956	parn	99	65.134	Petromyzon_marinus
MGP_PahariEiJ_G0016172	Parn	67	79.905	ENSPCIG00000001259	PARN	91	91.525	Phascolarctos_cinereus
MGP_PahariEiJ_G0016172	Parn	90	72.648	ENSPFOG00000012823	parn	82	72.648	Poecilia_formosa
MGP_PahariEiJ_G0016172	Parn	90	72.822	ENSPLAG00000006395	parn	82	72.822	Poecilia_latipinna
MGP_PahariEiJ_G0016172	Parn	90	72.822	ENSPMEG00000007711	parn	82	72.822	Poecilia_mexicana
MGP_PahariEiJ_G0016172	Parn	90	72.474	ENSPREG00000000147	parn	82	72.474	Poecilia_reticulata
MGP_PahariEiJ_G0016172	Parn	100	85.647	ENSPPYG00000007123	PARN	100	85.647	Pongo_abelii
MGP_PahariEiJ_G0016172	Parn	95	74.876	ENSPCAG00000001741	PARN	100	74.876	Procavia_capensis
MGP_PahariEiJ_G0016172	Parn	100	84.639	ENSPCOG00000019292	PARN	100	98.305	Propithecus_coquereli
MGP_PahariEiJ_G0016172	Parn	99	81.775	ENSPVAG00000002547	PARN	100	81.775	Pteropus_vampyrus
MGP_PahariEiJ_G0016172	Parn	91	73.010	ENSPNYG00000006835	parn	95	69.136	Pundamilia_nyererei
MGP_PahariEiJ_G0016172	Parn	83	71.619	ENSPNAG00000018905	parn	85	71.619	Pygocentrus_nattereri
MGP_PahariEiJ_G0016172	Parn	51	31.595	ENSRNOG00000023140	Pnldc1	89	30.462	Rattus_norvegicus
MGP_PahariEiJ_G0016172	Parn	100	92.056	ENSRNOG00000002912	Parn	100	97.030	Rattus_norvegicus
MGP_PahariEiJ_G0016172	Parn	52	84.084	ENSRBIG00000018726	PARN	100	84.084	Rhinopithecus_bieti
MGP_PahariEiJ_G0016172	Parn	52	84.084	ENSRROG00000011162	-	100	84.084	Rhinopithecus_roxellana
MGP_PahariEiJ_G0016172	Parn	100	84.038	ENSSBOG00000034726	PARN	100	96.610	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0016172	Parn	66	86.603	ENSSHAG00000008493	PARN	94	86.603	Sarcophilus_harrisii
MGP_PahariEiJ_G0016172	Parn	96	71.808	ENSSFOG00015014165	parn	88	76.749	Scleropages_formosus
MGP_PahariEiJ_G0016172	Parn	100	61.431	ENSSMAG00000000685	parn	100	61.526	Scophthalmus_maximus
MGP_PahariEiJ_G0016172	Parn	91	71.503	ENSSDUG00000014555	parn	83	71.503	Seriola_dumerili
MGP_PahariEiJ_G0016172	Parn	81	88.940	ENSSARG00000014339	PARN	89	88.940	Sorex_araneus
MGP_PahariEiJ_G0016172	Parn	100	79.310	ENSSPUG00000007719	PARN	100	79.310	Sphenodon_punctatus
MGP_PahariEiJ_G0016172	Parn	86	75.228	ENSSPAG00000007095	parn	89	70.674	Stegastes_partitus
MGP_PahariEiJ_G0016172	Parn	100	85.156	ENSSSCG00000007878	PARN	89	85.266	Sus_scrofa
MGP_PahariEiJ_G0016172	Parn	55	31.921	ENSTGUG00000011418	PNLDC1	69	31.073	Taeniopygia_guttata
MGP_PahariEiJ_G0016172	Parn	99	79.147	ENSTGUG00000004971	PARN	99	79.147	Taeniopygia_guttata
MGP_PahariEiJ_G0016172	Parn	100	67.919	ENSTNIG00000008252	parn	100	67.762	Tetraodon_nigroviridis
MGP_PahariEiJ_G0016172	Parn	91	73.402	ENSTBEG00000010407	PARN	100	73.402	Tupaia_belangeri
MGP_PahariEiJ_G0016172	Parn	99	80.507	ENSTTRG00000002843	PARN	100	80.507	Tursiops_truncatus
MGP_PahariEiJ_G0016172	Parn	69	77.294	ENSUAMG00000008283	PARN	90	77.294	Ursus_americanus
MGP_PahariEiJ_G0016172	Parn	100	85.737	ENSUMAG00000004527	PARN	100	85.737	Ursus_maritimus
MGP_PahariEiJ_G0016172	Parn	96	82.680	ENSVPAG00000008968	PARN	99	82.680	Vicugna_pacos
MGP_PahariEiJ_G0016172	Parn	100	85.423	ENSVVUG00000019509	PARN	100	85.423	Vulpes_vulpes
MGP_PahariEiJ_G0016172	Parn	100	71.406	ENSXETG00000010994	parn	100	79.468	Xenopus_tropicalis
MGP_PahariEiJ_G0016172	Parn	89	68.935	ENSXCOG00000015990	parn	96	68.213	Xiphophorus_couchianus
MGP_PahariEiJ_G0016172	Parn	91	71.649	ENSXMAG00000014783	parn	83	71.649	Xiphophorus_maculatus