EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0016524 (Gene tree)
Gene ID: 110329396
Gene Symbol: Cmss1
Alias: 1110001A06Rik|2610528E23Rik|4930572F24Rik
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Minus strand
Length: 299560 bases
Position: chr12:50863367-51162926
Accession: 110329396
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0029282	CMS1	PF14617.6	2e-31	1	1
MGP_PahariEiJ_P0029282	DEAD	PF00270.29	2.5e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0029282	-	930	-	MGP_PahariEiJ_P0029282	276 (aa)	XP_021064667	UPI000A3127C9

Gene Model

Click here to download MGP_PahariEiJ_G0016524's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0016524's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0016524	Cmss1	100	81.071	ENSG00000184220	CMSS1	99	87.654	Homo_sapiens
MGP_PahariEiJ_G0016524	Cmss1	73	64.851	ENSAPOG00000010604	cmss1	99	56.972	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0016524	Cmss1	93	80.769	ENSAMEG00000004092	CMSS1	100	80.769	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0016524	Cmss1	73	53.960	ENSACIG00000021854	cmss1	75	53.960	Amphilophus_citrinellus
MGP_PahariEiJ_G0016524	Cmss1	100	52.595	ENSAOCG00000013361	cmss1	100	52.595	Amphiprion_ocellaris
MGP_PahariEiJ_G0016524	Cmss1	100	52.069	ENSAPEG00000005829	cmss1	100	53.103	Amphiprion_percula
MGP_PahariEiJ_G0016524	Cmss1	100	52.560	ENSATEG00000008209	cmss1	100	53.020	Anabas_testudineus
MGP_PahariEiJ_G0016524	Cmss1	83	68.261	ENSAPLG00000010542	CMSS1	100	68.261	Anas_platyrhynchos
MGP_PahariEiJ_G0016524	Cmss1	86	67.917	ENSACAG00000011065	CMSS1	88	67.917	Anolis_carolinensis
MGP_PahariEiJ_G0016524	Cmss1	100	79.004	ENSANAG00000023565	CMSS1	100	79.004	Aotus_nancymaae
MGP_PahariEiJ_G0016524	Cmss1	100	50.853	ENSACLG00000027294	cmss1	100	51.877	Astatotilapia_calliptera
MGP_PahariEiJ_G0016524	Cmss1	100	45.918	ENSAMXG00000002046	cmss1	100	45.946	Astyanax_mexicanus
MGP_PahariEiJ_G0016524	Cmss1	100	81.429	ENSBTAG00000013663	CMSS1	100	81.429	Bos_taurus
MGP_PahariEiJ_G0016524	Cmss1	100	80.427	ENSCJAG00000000610	CMSS1	100	80.427	Callithrix_jacchus
MGP_PahariEiJ_G0016524	Cmss1	93	82.239	ENSCAFG00000009230	CMSS1	93	82.239	Canis_familiaris
MGP_PahariEiJ_G0016524	Cmss1	77	84.038	ENSCAFG00020024156	-	67	84.038	Canis_lupus_dingo
MGP_PahariEiJ_G0016524	Cmss1	93	81.923	ENSCAFG00020009464	-	95	81.923	Canis_lupus_dingo
MGP_PahariEiJ_G0016524	Cmss1	96	77.037	ENSCHIG00000013003	CMSS1	98	76.753	Capra_hircus
MGP_PahariEiJ_G0016524	Cmss1	93	78.764	ENSTSYG00000009266	CMSS1	99	78.764	Carlito_syrichta
MGP_PahariEiJ_G0016524	Cmss1	81	67.826	ENSCAPG00000013584	CMSS1	88	73.846	Cavia_aperea
MGP_PahariEiJ_G0016524	Cmss1	100	80.000	ENSCPOG00000014680	CMSS1	100	80.000	Cavia_porcellus
MGP_PahariEiJ_G0016524	Cmss1	100	80.783	ENSCCAG00000034685	CMSS1	100	80.783	Cebus_capucinus
MGP_PahariEiJ_G0016524	Cmss1	100	81.071	ENSCATG00000031980	CMSS1	100	81.071	Cercocebus_atys
MGP_PahariEiJ_G0016524	Cmss1	83	84.348	ENSCLAG00000011241	CMSS1	98	84.348	Chinchilla_lanigera
MGP_PahariEiJ_G0016524	Cmss1	88	82.857	ENSCSAG00000006024	CMSS1	99	82.857	Chlorocebus_sabaeus
MGP_PahariEiJ_G0016524	Cmss1	100	61.290	ENSCHOG00000012098	CMSS1	100	61.290	Choloepus_hoffmanni
MGP_PahariEiJ_G0016524	Cmss1	71	42.000	ENSCING00000014848	-	100	43.316	Ciona_intestinalis
MGP_PahariEiJ_G0016524	Cmss1	100	81.429	ENSCANG00000031337	CMSS1	100	81.429	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0016524	Cmss1	100	85.663	ENSCGRG00001014305	Cmss1	100	87.455	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0016524	Cmss1	92	87.549	ENSCGRG00000006722	Cmss1	99	87.549	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0016524	Cmss1	100	49.660	ENSCSEG00000004958	cmss1	100	51.351	Cynoglossus_semilaevis
MGP_PahariEiJ_G0016524	Cmss1	100	49.660	ENSCVAG00000005039	cmss1	100	52.069	Cyprinodon_variegatus
MGP_PahariEiJ_G0016524	Cmss1	100	46.959	ENSDARG00000112579	cmss1	100	48.630	Danio_rerio
MGP_PahariEiJ_G0016524	Cmss1	93	79.767	ENSDNOG00000040418	CMSS1	92	79.767	Dasypus_novemcinctus
MGP_PahariEiJ_G0016524	Cmss1	100	81.786	ENSDORG00000010461	Cmss1	100	81.786	Dipodomys_ordii
MGP_PahariEiJ_G0016524	Cmss1	96	75.373	ENSEASG00005010966	CMSS1	98	86.047	Equus_asinus_asinus
MGP_PahariEiJ_G0016524	Cmss1	95	77.068	ENSECAG00000015662	CMSS1	99	82.819	Equus_caballus
MGP_PahariEiJ_G0016524	Cmss1	100	52.857	ENSEEUG00000007624	-	100	52.500	Erinaceus_europaeus
MGP_PahariEiJ_G0016524	Cmss1	100	50.820	ENSELUG00000019459	cmss1	100	51.148	Esox_lucius
MGP_PahariEiJ_G0016524	Cmss1	100	83.571	ENSFCAG00000044577	CMSS1	100	83.571	Felis_catus
MGP_PahariEiJ_G0016524	Cmss1	83	66.522	ENSFALG00000005816	CMSS1	97	66.522	Ficedula_albicollis
MGP_PahariEiJ_G0016524	Cmss1	83	83.406	ENSFDAG00000012577	CMSS1	100	83.406	Fukomys_damarensis
MGP_PahariEiJ_G0016524	Cmss1	82	59.565	ENSFHEG00000012008	cmss1	95	60.870	Fundulus_heteroclitus
MGP_PahariEiJ_G0016524	Cmss1	99	50.896	ENSGMOG00000016729	cmss1	100	52.482	Gadus_morhua
MGP_PahariEiJ_G0016524	Cmss1	93	62.500	ENSGALG00000015267	CMSS1	95	62.500	Gallus_gallus
MGP_PahariEiJ_G0016524	Cmss1	75	63.107	ENSGAFG00000021217	cmss1	77	62.871	Gambusia_affinis
MGP_PahariEiJ_G0016524	Cmss1	99	48.772	ENSGACG00000002798	cmss1	100	49.825	Gasterosteus_aculeatus
MGP_PahariEiJ_G0016524	Cmss1	85	71.795	ENSGAGG00000019861	CMSS1	91	71.795	Gopherus_agassizii
MGP_PahariEiJ_G0016524	Cmss1	93	81.467	ENSGGOG00000014125	CMSS1	99	81.467	Gorilla_gorilla
MGP_PahariEiJ_G0016524	Cmss1	100	50.000	ENSHBUG00000008431	cmss1	100	52.055	Haplochromis_burtoni
MGP_PahariEiJ_G0016524	Cmss1	89	80.567	ENSHGLG00000019481	CMSS1	98	80.567	Heterocephalus_glaber_female
MGP_PahariEiJ_G0016524	Cmss1	92	79.528	ENSHGLG00100010314	CMSS1	99	79.528	Heterocephalus_glaber_male
MGP_PahariEiJ_G0016524	Cmss1	100	52.203	ENSHCOG00000003222	cmss1	100	53.559	Hippocampus_comes
MGP_PahariEiJ_G0016524	Cmss1	100	48.639	ENSIPUG00000011591	cmss1	100	47.826	Ictalurus_punctatus
MGP_PahariEiJ_G0016524	Cmss1	100	80.714	ENSSTOG00000019366	CMSS1	100	80.714	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0016524	Cmss1	100	78.929	ENSJJAG00000014894	Cmss1	100	78.929	Jaculus_jaculus
MGP_PahariEiJ_G0016524	Cmss1	73	53.465	ENSKMAG00000002390	cmss1	97	48.594	Kryptolebias_marmoratus
MGP_PahariEiJ_G0016524	Cmss1	73	58.621	ENSLBEG00000006298	cmss1	83	58.621	Labrus_bergylta
MGP_PahariEiJ_G0016524	Cmss1	83	66.522	ENSLACG00000009293	CMSS1	100	66.522	Latimeria_chalumnae
MGP_PahariEiJ_G0016524	Cmss1	100	51.237	ENSLOCG00000009391	cmss1	100	51.590	Lepisosteus_oculatus
MGP_PahariEiJ_G0016524	Cmss1	83	82.969	ENSLAFG00000017509	CMSS1	100	82.969	Loxodonta_africana
MGP_PahariEiJ_G0016524	Cmss1	100	81.429	ENSMFAG00000045006	CMSS1	100	81.429	Macaca_fascicularis
MGP_PahariEiJ_G0016524	Cmss1	100	81.071	ENSMMUG00000002939	CMSS1	98	83.710	Macaca_mulatta
MGP_PahariEiJ_G0016524	Cmss1	100	81.071	ENSMNEG00000031315	CMSS1	100	81.071	Macaca_nemestrina
MGP_PahariEiJ_G0016524	Cmss1	100	81.071	ENSMLEG00000033660	CMSS1	100	81.071	Mandrillus_leucophaeus
MGP_PahariEiJ_G0016524	Cmss1	100	52.218	ENSMAMG00000017176	cmss1	100	53.793	Mastacembelus_armatus
MGP_PahariEiJ_G0016524	Cmss1	100	50.853	ENSMZEG00005021886	cmss1	100	51.877	Maylandia_zebra
MGP_PahariEiJ_G0016524	Cmss1	83	67.686	ENSMGAG00000014360	CMSS1	100	67.686	Meleagris_gallopavo
MGP_PahariEiJ_G0016524	Cmss1	100	66.667	ENSMAUG00000020609	Cmss1	100	66.667	Mesocricetus_auratus
MGP_PahariEiJ_G0016524	Cmss1	100	82.500	ENSMICG00000048977	CMSS1	100	82.500	Microcebus_murinus
MGP_PahariEiJ_G0016524	Cmss1	100	86.232	ENSMOCG00000021937	Cmss1	100	86.232	Microtus_ochrogaster
MGP_PahariEiJ_G0016524	Cmss1	73	60.891	ENSMMOG00000019794	cmss1	95	55.319	Mola_mola
MGP_PahariEiJ_G0016524	Cmss1	94	71.154	ENSMODG00000002275	CMSS1	98	71.154	Monodelphis_domestica
MGP_PahariEiJ_G0016524	Cmss1	100	53.265	ENSMALG00000004250	cmss1	100	53.199	Monopterus_albus
MGP_PahariEiJ_G0016524	Cmss1	100	95.652	MGP_CAROLIEiJ_G0020824	Cmss1	100	95.652	Mus_caroli
MGP_PahariEiJ_G0016524	Cmss1	100	96.377	ENSMUSG00000022748	Cmss1	100	96.377	Mus_musculus
MGP_PahariEiJ_G0016524	Cmss1	100	96.377	MGP_SPRETEiJ_G0021724	Cmss1	100	96.377	Mus_spretus
MGP_PahariEiJ_G0016524	Cmss1	92	83.721	ENSMPUG00000011324	CMSS1	99	83.721	Mustela_putorius_furo
MGP_PahariEiJ_G0016524	Cmss1	93	82.375	ENSMLUG00000001131	CMSS1	99	82.375	Myotis_lucifugus
MGP_PahariEiJ_G0016524	Cmss1	100	83.929	ENSNGAG00000020316	Cmss1	100	83.929	Nannospalax_galili
MGP_PahariEiJ_G0016524	Cmss1	100	50.512	ENSNBRG00000003095	cmss1	100	51.536	Neolamprologus_brichardi
MGP_PahariEiJ_G0016524	Cmss1	100	82.143	ENSNLEG00000034172	CMSS1	100	82.143	Nomascus_leucogenys
MGP_PahariEiJ_G0016524	Cmss1	83	65.502	ENSMEUG00000014505	CMSS1	100	65.502	Notamacropus_eugenii
MGP_PahariEiJ_G0016524	Cmss1	100	81.362	ENSOPRG00000002986	CMSS1	100	81.362	Ochotona_princeps
MGP_PahariEiJ_G0016524	Cmss1	100	80.357	ENSODEG00000005226	-	100	80.357	Octodon_degus
MGP_PahariEiJ_G0016524	Cmss1	100	69.534	ENSODEG00000001853	-	100	69.534	Octodon_degus
MGP_PahariEiJ_G0016524	Cmss1	100	66.065	ENSODEG00000009446	-	100	64.621	Octodon_degus
MGP_PahariEiJ_G0016524	Cmss1	100	76.703	ENSODEG00000003558	-	100	76.703	Octodon_degus
MGP_PahariEiJ_G0016524	Cmss1	73	60.891	ENSONIG00000006678	cmss1	77	60.891	Oreochromis_niloticus
MGP_PahariEiJ_G0016524	Cmss1	92	71.429	ENSOANG00000007529	CMSS1	100	75.536	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0016524	Cmss1	93	81.467	ENSOCUG00000025366	CMSS1	93	81.467	Oryctolagus_cuniculus
MGP_PahariEiJ_G0016524	Cmss1	100	52.281	ENSORLG00000020340	cmss1	100	54.035	Oryzias_latipes
MGP_PahariEiJ_G0016524	Cmss1	76	55.450	ENSORLG00020012235	cmss1	85	55.446	Oryzias_latipes_hni
MGP_PahariEiJ_G0016524	Cmss1	73	56.436	ENSORLG00015015551	cmss1	75	56.436	Oryzias_latipes_hsok
MGP_PahariEiJ_G0016524	Cmss1	100	53.979	ENSOMEG00000012555	cmss1	100	55.017	Oryzias_melastigma
MGP_PahariEiJ_G0016524	Cmss1	83	83.843	ENSOGAG00000002045	CMSS1	100	83.843	Otolemur_garnettii
MGP_PahariEiJ_G0016524	Cmss1	92	80.233	ENSOARG00000017899	CMSS1	88	80.233	Ovis_aries
MGP_PahariEiJ_G0016524	Cmss1	93	81.467	ENSPPAG00000038515	CMSS1	100	77.061	Pan_paniscus
MGP_PahariEiJ_G0016524	Cmss1	100	82.857	ENSPPRG00000016767	CMSS1	100	82.857	Panthera_pardus
MGP_PahariEiJ_G0016524	Cmss1	100	82.143	ENSPTIG00000018274	CMSS1	100	82.143	Panthera_tigris_altaica
MGP_PahariEiJ_G0016524	Cmss1	100	80.714	ENSPTRG00000015157	CMSS1	99	82.449	Pan_troglodytes
MGP_PahariEiJ_G0016524	Cmss1	93	79.688	ENSPANG00000019980	CMSS1	99	79.688	Papio_anubis
MGP_PahariEiJ_G0016524	Cmss1	91	56.538	ENSPKIG00000012609	cmss1	97	56.757	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0016524	Cmss1	83	73.913	ENSPSIG00000003849	CMSS1	100	73.913	Pelodiscus_sinensis
MGP_PahariEiJ_G0016524	Cmss1	85	57.447	ENSPMGG00000010286	cmss1	99	57.447	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0016524	Cmss1	100	88.256	ENSPEMG00000016384	Cmss1	100	88.256	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0016524	Cmss1	74	52.941	ENSPMAG00000001146	cmss1	99	53.465	Petromyzon_marinus
MGP_PahariEiJ_G0016524	Cmss1	92	71.264	ENSPCIG00000015656	CMSS1	98	71.264	Phascolarctos_cinereus
MGP_PahariEiJ_G0016524	Cmss1	100	51.748	ENSPFOG00000016849	cmss1	100	52.721	Poecilia_formosa
MGP_PahariEiJ_G0016524	Cmss1	100	51.399	ENSPLAG00000008323	cmss1	100	52.381	Poecilia_latipinna
MGP_PahariEiJ_G0016524	Cmss1	100	52.041	ENSPMEG00000021020	cmss1	100	52.721	Poecilia_mexicana
MGP_PahariEiJ_G0016524	Cmss1	73	61.881	ENSPREG00000007618	cmss1	69	61.881	Poecilia_reticulata
MGP_PahariEiJ_G0016524	Cmss1	100	81.071	ENSPPYG00000013606	CMSS1	100	81.071	Pongo_abelii
MGP_PahariEiJ_G0016524	Cmss1	100	82.500	ENSPCOG00000020035	CMSS1	100	82.500	Propithecus_coquereli
MGP_PahariEiJ_G0016524	Cmss1	100	71.429	ENSPVAG00000017031	CMSS1	100	71.429	Pteropus_vampyrus
MGP_PahariEiJ_G0016524	Cmss1	91	51.311	ENSPNYG00000013428	cmss1	97	52.434	Pundamilia_nyererei
MGP_PahariEiJ_G0016524	Cmss1	100	48.639	ENSPNAG00000007912	cmss1	100	48.639	Pygocentrus_nattereri
MGP_PahariEiJ_G0016524	Cmss1	93	93.359	ENSRNOG00000027888	Cmss1	99	93.359	Rattus_norvegicus
MGP_PahariEiJ_G0016524	Cmss1	100	80.714	ENSRBIG00000037931	CMSS1	100	80.714	Rhinopithecus_bieti
MGP_PahariEiJ_G0016524	Cmss1	100	80.714	ENSRROG00000042910	CMSS1	100	80.714	Rhinopithecus_roxellana
MGP_PahariEiJ_G0016524	Cmss1	93	80.385	ENSSBOG00000030980	CMSS1	99	80.385	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0016524	Cmss1	89	70.356	ENSSHAG00000009321	CMSS1	99	71.542	Sarcophilus_harrisii
MGP_PahariEiJ_G0016524	Cmss1	100	53.448	ENSSFOG00015001509	cmss1	100	54.452	Scleropages_formosus
MGP_PahariEiJ_G0016524	Cmss1	100	51.546	ENSSMAG00000001653	cmss1	100	52.921	Scophthalmus_maximus
MGP_PahariEiJ_G0016524	Cmss1	100	55.137	ENSSDUG00000007719	cmss1	100	54.828	Seriola_dumerili
MGP_PahariEiJ_G0016524	Cmss1	75	64.078	ENSSLDG00000012300	cmss1	95	52.817	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0016524	Cmss1	100	66.904	ENSSARG00000003584	CMSS1	100	66.904	Sorex_araneus
MGP_PahariEiJ_G0016524	Cmss1	82	68.282	ENSSPUG00000003865	CMSS1	100	68.282	Sphenodon_punctatus
MGP_PahariEiJ_G0016524	Cmss1	94	55.431	ENSSPAG00000019182	cmss1	83	55.431	Stegastes_partitus
MGP_PahariEiJ_G0016524	Cmss1	100	83.214	ENSSSCG00000011970	CMSS1	100	83.214	Sus_scrofa
MGP_PahariEiJ_G0016524	Cmss1	83	65.652	ENSTGUG00000013635	CMSS1	100	65.652	Taeniopygia_guttata
MGP_PahariEiJ_G0016524	Cmss1	100	50.690	ENSTRUG00000015265	cmss1	100	50.690	Takifugu_rubripes
MGP_PahariEiJ_G0016524	Cmss1	73	56.931	ENSTNIG00000002880	cmss1	73	56.931	Tetraodon_nigroviridis
MGP_PahariEiJ_G0016524	Cmss1	100	55.872	ENSTBEG00000016722	CMSS1	100	55.872	Tupaia_belangeri
MGP_PahariEiJ_G0016524	Cmss1	100	78.571	ENSTTRG00000001562	CMSS1	100	78.571	Tursiops_truncatus
MGP_PahariEiJ_G0016524	Cmss1	97	79.197	ENSUAMG00000024209	CMSS1	100	86.161	Ursus_americanus
MGP_PahariEiJ_G0016524	Cmss1	93	81.154	ENSUMAG00000001983	CMSS1	99	81.323	Ursus_maritimus
MGP_PahariEiJ_G0016524	Cmss1	100	63.214	ENSVPAG00000000263	CMSS1	100	63.214	Vicugna_pacos
MGP_PahariEiJ_G0016524	Cmss1	88	82.591	ENSVVUG00000021647	-	100	82.591	Vulpes_vulpes
MGP_PahariEiJ_G0016524	Cmss1	82	84.513	ENSVVUG00000007776	-	89	84.513	Vulpes_vulpes
MGP_PahariEiJ_G0016524	Cmss1	100	55.319	ENSXETG00000011858	cmss1	100	55.319	Xenopus_tropicalis
MGP_PahariEiJ_G0016524	Cmss1	75	62.621	ENSXCOG00000018724	cmss1	69	62.376	Xiphophorus_couchianus
MGP_PahariEiJ_G0016524	Cmss1	75	62.621	ENSXMAG00000011243	cmss1	76	62.376	Xiphophorus_maculatus