EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0016649 (Gene tree)
Gene ID: 110329671
Gene Symbol: Scaf4
Alias: Sfrs15|Sra4|Srsf15
Full Name: SR-related CTD associated factor 4
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Minus strand
Length: 53671 bases
Position: chr12:81312649-81366319
Accession: 110329671
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0029572	RRM_1	PF00076.22	5.7e-09	1	1
MGP_PahariEiJ_P0029573	RRM_1	PF00076.22	5.7e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0029572	-	4216	-	MGP_PahariEiJ_P0029572	1195 (aa)	-	-
MGP_PahariEiJ_T0029573	-	4203	XM_021209444	MGP_PahariEiJ_P0029573	1221 (aa)	XP_021065103	UPI000A308DFB

Gene Model

Click here to download MGP_PahariEiJ_G0016649's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0016649's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0016649	Scaf4	100	86.667	ENSG00000156304	SCAF4	100	82.792	Homo_sapiens
MGP_PahariEiJ_G0016649	Scaf4	70	86.641	ENSAMEG00000014987	SCAF4	94	87.931	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0016649	Scaf4	95	74.807	ENSAPLG00000002509	SCAF4	59	71.939	Anas_platyrhynchos
MGP_PahariEiJ_G0016649	Scaf4	95	87.913	ENSANAG00000037494	SCAF4	100	82.549	Aotus_nancymaae
MGP_PahariEiJ_G0016649	Scaf4	97	85.347	ENSBTAG00000018855	SCAF4	100	81.412	Bos_taurus
MGP_PahariEiJ_G0016649	Scaf4	95	87.786	ENSCJAG00000008993	SCAF4	100	82.224	Callithrix_jacchus
MGP_PahariEiJ_G0016649	Scaf4	96	87.277	ENSCAFG00000008863	SCAF4	98	88.220	Canis_familiaris
MGP_PahariEiJ_G0016649	Scaf4	95	84.733	ENSCAFG00020026019	SCAF4	98	88.220	Canis_lupus_dingo
MGP_PahariEiJ_G0016649	Scaf4	97	85.385	ENSCHIG00000008385	SCAF4	100	80.941	Capra_hircus
MGP_PahariEiJ_G0016649	Scaf4	99	83.377	ENSTSYG00000011344	SCAF4	82	82.818	Carlito_syrichta
MGP_PahariEiJ_G0016649	Scaf4	100	82.921	ENSCPOG00000012443	SCAF4	98	88.105	Cavia_porcellus
MGP_PahariEiJ_G0016649	Scaf4	100	86.667	ENSCCAG00000033727	SCAF4	95	88.889	Cebus_capucinus
MGP_PahariEiJ_G0016649	Scaf4	100	85.897	ENSCATG00000030379	SCAF4	100	82.711	Cercocebus_atys
MGP_PahariEiJ_G0016649	Scaf4	99	84.316	ENSCLAG00000006298	SCAF4	100	81.826	Chinchilla_lanigera
MGP_PahariEiJ_G0016649	Scaf4	100	86.154	ENSCSAG00000009438	SCAF4	100	82.549	Chlorocebus_sabaeus
MGP_PahariEiJ_G0016649	Scaf4	100	86.667	ENSCANG00000029847	SCAF4	100	82.792	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0016649	Scaf4	99	88.376	ENSCGRG00001020821	Scaf4	100	87.139	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0016649	Scaf4	99	88.411	ENSCGRG00000014360	Scaf4	100	86.705	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0016649	Scaf4	98	82.262	ENSDNOG00000019014	SCAF4	94	78.699	Dasypus_novemcinctus
MGP_PahariEiJ_G0016649	Scaf4	88	81.717	ENSETEG00000000583	SCAF4	96	80.471	Echinops_telfairi
MGP_PahariEiJ_G0016649	Scaf4	100	85.090	ENSEASG00005007756	SCAF4	66	88.351	Equus_asinus_asinus
MGP_PahariEiJ_G0016649	Scaf4	100	84.833	ENSECAG00000014248	SCAF4	66	88.351	Equus_caballus
MGP_PahariEiJ_G0016649	Scaf4	54	55.932	ENSELUG00000002779	SCAF8	61	69.565	Esox_lucius
MGP_PahariEiJ_G0016649	Scaf4	100	83.951	ENSFCAG00000002228	SCAF4	98	88.089	Felis_catus
MGP_PahariEiJ_G0016649	Scaf4	99	82.864	ENSFDAG00000017780	SCAF4	100	82.382	Fukomys_damarensis
MGP_PahariEiJ_G0016649	Scaf4	55	60.448	ENSFHEG00000007634	scaf4b	52	79.137	Fundulus_heteroclitus
MGP_PahariEiJ_G0016649	Scaf4	100	75.765	ENSGALG00000033965	SCAF4	57	87.121	Gallus_gallus
MGP_PahariEiJ_G0016649	Scaf4	55	63.922	ENSGAFG00000019460	scaf4a	55	75.000	Gambusia_affinis
MGP_PahariEiJ_G0016649	Scaf4	71	54.912	ENSGACG00000020580	scaf4a	53	70.732	Gasterosteus_aculeatus
MGP_PahariEiJ_G0016649	Scaf4	93	86.667	ENSGGOG00000015557	SCAF4	99	80.301	Gorilla_gorilla
MGP_PahariEiJ_G0016649	Scaf4	100	83.709	ENSHGLG00000010582	SCAF4	100	81.305	Heterocephalus_glaber_female
MGP_PahariEiJ_G0016649	Scaf4	99	83.117	ENSHGLG00100009441	SCAF4	100	81.092	Heterocephalus_glaber_male
MGP_PahariEiJ_G0016649	Scaf4	65	58.312	ENSIPUG00000011285	scaf4	52	75.000	Ictalurus_punctatus
MGP_PahariEiJ_G0016649	Scaf4	99	84.788	ENSSTOG00000004450	SCAF4	98	89.412	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0016649	Scaf4	92	87.752	ENSJJAG00000019447	Scaf4	98	87.484	Jaculus_jaculus
MGP_PahariEiJ_G0016649	Scaf4	56	59.770	ENSKMAG00000005742	scaf4b	54	75.159	Kryptolebias_marmoratus
MGP_PahariEiJ_G0016649	Scaf4	90	63.686	ENSLACG00000013913	SCAF4	59	63.675	Latimeria_chalumnae
MGP_PahariEiJ_G0016649	Scaf4	81	62.283	ENSLOCG00000009162	scaf4a	59	61.872	Lepisosteus_oculatus
MGP_PahariEiJ_G0016649	Scaf4	95	87.150	ENSLAFG00000010710	SCAF4	100	81.224	Loxodonta_africana
MGP_PahariEiJ_G0016649	Scaf4	100	85.897	ENSMFAG00000037668	SCAF4	100	82.672	Macaca_fascicularis
MGP_PahariEiJ_G0016649	Scaf4	100	85.897	ENSMMUG00000001712	SCAF4	100	82.591	Macaca_mulatta
MGP_PahariEiJ_G0016649	Scaf4	100	85.641	ENSMNEG00000032966	SCAF4	100	82.443	Macaca_nemestrina
MGP_PahariEiJ_G0016649	Scaf4	99	85.526	ENSMLEG00000039674	SCAF4	100	82.502	Mandrillus_leucophaeus
MGP_PahariEiJ_G0016649	Scaf4	99	75.196	ENSMGAG00000014515	SCAF4	57	87.121	Meleagris_gallopavo
MGP_PahariEiJ_G0016649	Scaf4	63	89.673	ENSMAUG00000013307	Scaf4	67	89.412	Mesocricetus_auratus
MGP_PahariEiJ_G0016649	Scaf4	99	85.604	ENSMICG00000005256	SCAF4	100	82.372	Microcebus_murinus
MGP_PahariEiJ_G0016649	Scaf4	100	89.189	ENSMOCG00000012087	Scaf4	100	88.534	Microtus_ochrogaster
MGP_PahariEiJ_G0016649	Scaf4	99	78.068	ENSMODG00000021040	SCAF4	99	74.492	Monodelphis_domestica
MGP_PahariEiJ_G0016649	Scaf4	100	96.491	MGP_CAROLIEiJ_G0020944	Scaf4	100	96.491	Mus_caroli
MGP_PahariEiJ_G0016649	Scaf4	100	95.905	ENSMUSG00000022983	Scaf4	100	95.905	Mus_musculus
MGP_PahariEiJ_G0016649	Scaf4	100	95.748	MGP_SPRETEiJ_G0021850	Scaf4	100	95.748	Mus_spretus
MGP_PahariEiJ_G0016649	Scaf4	96	88.025	ENSMPUG00000001078	SCAF4	98	88.512	Mustela_putorius_furo
MGP_PahariEiJ_G0016649	Scaf4	99	87.728	ENSNGAG00000005214	Scaf4	97	89.281	Nannospalax_galili
MGP_PahariEiJ_G0016649	Scaf4	97	88.550	ENSNLEG00000003569	SCAF4	100	83.117	Nomascus_leucogenys
MGP_PahariEiJ_G0016649	Scaf4	74	88.587	ENSOPRG00000007016	SCAF4	77	88.587	Ochotona_princeps
MGP_PahariEiJ_G0016649	Scaf4	95	88.295	ENSODEG00000002718	SCAF4	100	80.983	Octodon_degus
MGP_PahariEiJ_G0016649	Scaf4	100	85.751	ENSOCUG00000008336	SCAF4	100	80.357	Oryctolagus_cuniculus
MGP_PahariEiJ_G0016649	Scaf4	99	78.254	ENSOGAG00000014653	SCAF4	99	77.689	Otolemur_garnettii
MGP_PahariEiJ_G0016649	Scaf4	94	86.658	ENSOARG00000013894	SCAF4	71	80.986	Ovis_aries
MGP_PahariEiJ_G0016649	Scaf4	100	86.667	ENSPPAG00000028535	SCAF4	100	82.792	Pan_paniscus
MGP_PahariEiJ_G0016649	Scaf4	96	87.150	ENSPPRG00000000635	SCAF4	98	87.958	Panthera_pardus
MGP_PahariEiJ_G0016649	Scaf4	99	80.513	ENSPTIG00000021578	SCAF4	98	83.073	Panthera_tigris_altaica
MGP_PahariEiJ_G0016649	Scaf4	100	86.667	ENSPTRG00000013848	SCAF4	100	82.792	Pan_troglodytes
MGP_PahariEiJ_G0016649	Scaf4	100	85.897	ENSPANG00000017332	SCAF4	100	82.591	Papio_anubis
MGP_PahariEiJ_G0016649	Scaf4	94	76.393	ENSPSIG00000014242	SCAF4	55	89.394	Pelodiscus_sinensis
MGP_PahariEiJ_G0016649	Scaf4	85	80.499	ENSPCIG00000028183	SCAF4	91	72.869	Phascolarctos_cinereus
MGP_PahariEiJ_G0016649	Scaf4	68	53.521	ENSPFOG00000017156	scaf4a	53	73.171	Poecilia_formosa
MGP_PahariEiJ_G0016649	Scaf4	56	61.481	ENSPLAG00000001972	scaf4a	61	73.780	Poecilia_latipinna
MGP_PahariEiJ_G0016649	Scaf4	100	86.667	ENSPPYG00000011355	SCAF4	100	82.711	Pongo_abelii
MGP_PahariEiJ_G0016649	Scaf4	92	79.477	ENSPCAG00000009998	SCAF4	100	71.080	Procavia_capensis
MGP_PahariEiJ_G0016649	Scaf4	100	85.604	ENSPCOG00000018710	SCAF4	100	82.535	Propithecus_coquereli
MGP_PahariEiJ_G0016649	Scaf4	96	86.462	ENSPVAG00000005220	SCAF4	98	87.173	Pteropus_vampyrus
MGP_PahariEiJ_G0016649	Scaf4	100	89.262	ENSRNOG00000002104	Scaf4	100	92.033	Rattus_norvegicus
MGP_PahariEiJ_G0016649	Scaf4	95	87.786	ENSRBIG00000040007	SCAF4	95	89.474	Rhinopithecus_bieti
MGP_PahariEiJ_G0016649	Scaf4	100	86.410	ENSRROG00000029488	SCAF4	100	82.549	Rhinopithecus_roxellana
MGP_PahariEiJ_G0016649	Scaf4	100	76.313	ENSSHAG00000001581	SCAF4	99	73.800	Sarcophilus_harrisii
MGP_PahariEiJ_G0016649	Scaf4	61	58.364	ENSSMAG00000003738	scaf4b	54	72.785	Scophthalmus_maximus
MGP_PahariEiJ_G0016649	Scaf4	97	83.029	ENSSARG00000009994	SCAF4	99	79.058	Sorex_araneus
MGP_PahariEiJ_G0016649	Scaf4	95	85.533	ENSSSCG00000021023	SCAF4	98	86.544	Sus_scrofa
MGP_PahariEiJ_G0016649	Scaf4	75	71.036	ENSTGUG00000013464	SCAF4	62	70.516	Taeniopygia_guttata
MGP_PahariEiJ_G0016649	Scaf4	99	85.224	ENSTTRG00000010963	SCAF4	98	86.813	Tursiops_truncatus
MGP_PahariEiJ_G0016649	Scaf4	100	82.178	ENSUAMG00000008860	SCAF4	98	85.829	Ursus_americanus
MGP_PahariEiJ_G0016649	Scaf4	95	85.751	ENSUMAG00000016962	SCAF4	98	86.649	Ursus_maritimus
MGP_PahariEiJ_G0016649	Scaf4	95	87.277	ENSVVUG00000002953	SCAF4	98	88.220	Vulpes_vulpes
MGP_PahariEiJ_G0016649	Scaf4	99	56.312	ENSXETG00000007351	scaf4	51	60.964	Xenopus_tropicalis