EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0016653 (Gene tree)
Gene ID: 110329503
Gene Symbol: Urb1
Alias: 4921511H13Rik|5730405K23Rik
Full Name: URB1 ribosome biogenesis homolog
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Minus strand
Length: 58126 bases
Position: chr12:81820320-81878445
Accession: 110329503
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0029582	Npa1	PF11707.8	2e-83	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0029583	-	809	-	-	- (aa)	-	-
MGP_PahariEiJ_T0029582	-	7335	XM_021209125	MGP_PahariEiJ_P0029582	2277 (aa)	XP_021064784	UPI000A30BFBC
MGP_PahariEiJ_T0029585	-	1209	-	-	- (aa)	-	-
MGP_PahariEiJ_T0029584	-	2193	-	-	- (aa)	-	-
MGP_PahariEiJ_T0029586	-	659	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0016653's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0016653's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0016653	Urb1	99	76.533	ENSG00000142207	URB1	99	76.375	Homo_sapiens
MGP_PahariEiJ_G0016653	Urb1	99	42.316	ENSAPOG00000020308	urb1	99	42.360	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0016653	Urb1	99	73.636	ENSAMEG00000011998	URB1	99	73.636	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0016653	Urb1	94	44.135	ENSACIG00000003248	urb1	96	44.135	Amphilophus_citrinellus
MGP_PahariEiJ_G0016653	Urb1	99	40.505	ENSAOCG00000010364	urb1	99	40.549	Amphiprion_ocellaris
MGP_PahariEiJ_G0016653	Urb1	96	51.474	ENSAPEG00000010758	urb1	99	51.474	Amphiprion_percula
MGP_PahariEiJ_G0016653	Urb1	97	43.826	ENSATEG00000011790	urb1	96	43.826	Anabas_testudineus
MGP_PahariEiJ_G0016653	Urb1	97	54.635	ENSAPLG00000012791	URB1	100	54.500	Anas_platyrhynchos
MGP_PahariEiJ_G0016653	Urb1	99	51.499	ENSACAG00000002817	URB1	99	51.630	Anolis_carolinensis
MGP_PahariEiJ_G0016653	Urb1	99	75.989	ENSANAG00000024617	URB1	99	75.989	Aotus_nancymaae
MGP_PahariEiJ_G0016653	Urb1	99	44.067	ENSACLG00000024865	urb1	99	44.067	Astatotilapia_calliptera
MGP_PahariEiJ_G0016653	Urb1	99	40.000	ENSAMXG00000012306	urb1	99	40.070	Astyanax_mexicanus
MGP_PahariEiJ_G0016653	Urb1	99	70.465	ENSBTAG00000012412	URB1	99	70.609	Bos_taurus
MGP_PahariEiJ_G0016653	Urb1	99	75.714	ENSCJAG00000009118	URB1	99	75.714	Callithrix_jacchus
MGP_PahariEiJ_G0016653	Urb1	99	74.243	ENSCAFG00000008892	URB1	99	74.243	Canis_familiaris
MGP_PahariEiJ_G0016653	Urb1	99	73.988	ENSCAFG00020025987	-	99	73.944	Canis_lupus_dingo
MGP_PahariEiJ_G0016653	Urb1	99	73.063	ENSCAFG00020025994	-	99	72.975	Canis_lupus_dingo
MGP_PahariEiJ_G0016653	Urb1	99	70.070	ENSCHIG00000015645	URB1	99	70.245	Capra_hircus
MGP_PahariEiJ_G0016653	Urb1	99	75.748	ENSTSYG00000013286	URB1	99	75.704	Carlito_syrichta
MGP_PahariEiJ_G0016653	Urb1	98	73.741	ENSCAPG00000015589	URB1	99	73.512	Cavia_aperea
MGP_PahariEiJ_G0016653	Urb1	99	74.780	ENSCPOG00000006748	URB1	99	74.780	Cavia_porcellus
MGP_PahariEiJ_G0016653	Urb1	99	75.901	ENSCCAG00000021299	URB1	99	75.901	Cebus_capucinus
MGP_PahariEiJ_G0016653	Urb1	99	76.419	ENSCATG00000042630	URB1	99	76.375	Cercocebus_atys
MGP_PahariEiJ_G0016653	Urb1	99	75.528	ENSCLAG00000005262	URB1	99	75.528	Chinchilla_lanigera
MGP_PahariEiJ_G0016653	Urb1	99	75.120	ENSCSAG00000009584	URB1	99	75.120	Chlorocebus_sabaeus
MGP_PahariEiJ_G0016653	Urb1	99	56.869	ENSCPBG00000006454	URB1	99	56.813	Chrysemys_picta_bellii
MGP_PahariEiJ_G0016653	Urb1	99	76.111	ENSCANG00000031088	URB1	99	76.111	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0016653	Urb1	98	85.905	ENSCGRG00001010616	Urb1	100	85.645	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0016653	Urb1	98	85.380	ENSCGRG00000015840	Urb1	100	85.380	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0016653	Urb1	96	50.556	ENSCSEG00000012616	urb1	99	41.751	Cynoglossus_semilaevis
MGP_PahariEiJ_G0016653	Urb1	98	45.000	ENSCVAG00000009076	urb1	98	51.954	Cyprinodon_variegatus
MGP_PahariEiJ_G0016653	Urb1	99	42.707	ENSDARG00000060308	urb1	99	42.926	Danio_rerio
MGP_PahariEiJ_G0016653	Urb1	85	73.760	ENSDNOG00000015586	URB1	99	73.760	Dasypus_novemcinctus
MGP_PahariEiJ_G0016653	Urb1	99	75.968	ENSDORG00000006735	Urb1	99	75.968	Dipodomys_ordii
MGP_PahariEiJ_G0016653	Urb1	92	74.545	ENSETEG00000009080	URB1	92	74.545	Echinops_telfairi
MGP_PahariEiJ_G0016653	Urb1	99	73.515	ENSEASG00005007711	URB1	99	73.515	Equus_asinus_asinus
MGP_PahariEiJ_G0016653	Urb1	97	81.880	ENSECAG00000013206	URB1	99	81.880	Equus_caballus
MGP_PahariEiJ_G0016653	Urb1	55	82.231	ENSEEUG00000003626	-	55	82.231	Erinaceus_europaeus
MGP_PahariEiJ_G0016653	Urb1	98	43.901	ENSELUG00000020516	urb1	98	44.077	Esox_lucius
MGP_PahariEiJ_G0016653	Urb1	99	73.404	ENSFCAG00000002177	URB1	99	73.448	Felis_catus
MGP_PahariEiJ_G0016653	Urb1	97	50.572	ENSFALG00000004636	URB1	99	50.417	Ficedula_albicollis
MGP_PahariEiJ_G0016653	Urb1	99	75.473	ENSFDAG00000007288	URB1	95	75.473	Fukomys_damarensis
MGP_PahariEiJ_G0016653	Urb1	98	41.408	ENSFHEG00000000202	urb1	98	42.209	Fundulus_heteroclitus
MGP_PahariEiJ_G0016653	Urb1	90	46.608	ENSGMOG00000001838	urb1	91	46.608	Gadus_morhua
MGP_PahariEiJ_G0016653	Urb1	99	54.795	ENSGALG00000015887	URB1	99	54.664	Gallus_gallus
MGP_PahariEiJ_G0016653	Urb1	99	42.161	ENSGAFG00000020694	urb1	98	52.101	Gambusia_affinis
MGP_PahariEiJ_G0016653	Urb1	98	43.627	ENSGACG00000011703	urb1	99	43.627	Gasterosteus_aculeatus
MGP_PahariEiJ_G0016653	Urb1	99	56.340	ENSGAGG00000022544	URB1	99	56.340	Gopherus_agassizii
MGP_PahariEiJ_G0016653	Urb1	99	76.507	ENSGGOG00000000285	URB1	99	76.507	Gorilla_gorilla
MGP_PahariEiJ_G0016653	Urb1	99	44.067	ENSHBUG00000001904	urb1	99	44.067	Haplochromis_burtoni
MGP_PahariEiJ_G0016653	Urb1	99	74.273	ENSHGLG00000004907	URB1	99	74.273	Heterocephalus_glaber_female
MGP_PahariEiJ_G0016653	Urb1	99	74.769	ENSHGLG00100010749	URB1	99	74.769	Heterocephalus_glaber_male
MGP_PahariEiJ_G0016653	Urb1	69	51.550	ENSHCOG00000018683	urb1	97	46.693	Hippocampus_comes
MGP_PahariEiJ_G0016653	Urb1	99	39.965	ENSIPUG00000014721	urb1	99	39.965	Ictalurus_punctatus
MGP_PahariEiJ_G0016653	Urb1	99	75.870	ENSSTOG00000004539	URB1	99	75.870	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0016653	Urb1	99	45.120	ENSKMAG00000006001	urb1	99	46.832	Kryptolebias_marmoratus
MGP_PahariEiJ_G0016653	Urb1	97	40.341	ENSLBEG00000027208	urb1	99	49.579	Labrus_bergylta
MGP_PahariEiJ_G0016653	Urb1	99	47.455	ENSLACG00000017059	URB1	100	47.500	Latimeria_chalumnae
MGP_PahariEiJ_G0016653	Urb1	98	45.214	ENSLOCG00000009190	urb1	98	45.238	Lepisosteus_oculatus
MGP_PahariEiJ_G0016653	Urb1	99	71.466	ENSLAFG00000010407	URB1	100	71.466	Loxodonta_africana
MGP_PahariEiJ_G0016653	Urb1	99	76.155	ENSMFAG00000034391	URB1	97	76.155	Macaca_fascicularis
MGP_PahariEiJ_G0016653	Urb1	99	75.979	ENSMMUG00000010295	URB1	99	75.979	Macaca_mulatta
MGP_PahariEiJ_G0016653	Urb1	99	74.890	ENSMNEG00000032981	URB1	99	74.890	Macaca_nemestrina
MGP_PahariEiJ_G0016653	Urb1	99	76.287	ENSMLEG00000041435	URB1	99	76.287	Mandrillus_leucophaeus
MGP_PahariEiJ_G0016653	Urb1	99	42.194	ENSMAMG00000011238	urb1	99	42.194	Mastacembelus_armatus
MGP_PahariEiJ_G0016653	Urb1	99	41.158	ENSMZEG00005011862	urb1	99	41.158	Maylandia_zebra
MGP_PahariEiJ_G0016653	Urb1	98	54.791	ENSMGAG00000014512	URB1	99	54.747	Meleagris_gallopavo
MGP_PahariEiJ_G0016653	Urb1	93	82.920	ENSMAUG00000010516	Urb1	100	82.471	Mesocricetus_auratus
MGP_PahariEiJ_G0016653	Urb1	99	75.187	ENSMICG00000016424	URB1	99	75.187	Microcebus_murinus
MGP_PahariEiJ_G0016653	Urb1	99	84.676	ENSMOCG00000012613	Urb1	99	84.676	Microtus_ochrogaster
MGP_PahariEiJ_G0016653	Urb1	99	61.148	ENSMODG00000021076	URB1	99	61.148	Monodelphis_domestica
MGP_PahariEiJ_G0016653	Urb1	97	42.831	ENSMALG00000017411	urb1	97	51.423	Monopterus_albus
MGP_PahariEiJ_G0016653	Urb1	100	94.379	MGP_CAROLIEiJ_G0020948	Urb1	100	94.379	Mus_caroli
MGP_PahariEiJ_G0016653	Urb1	99	95.035	ENSMUSG00000039929	Urb1	99	95.035	Mus_musculus
MGP_PahariEiJ_G0016653	Urb1	99	95.079	MGP_SPRETEiJ_G0021854	Urb1	99	95.079	Mus_spretus
MGP_PahariEiJ_G0016653	Urb1	99	73.119	ENSMPUG00000001123	URB1	99	73.119	Mustela_putorius_furo
MGP_PahariEiJ_G0016653	Urb1	99	78.041	ENSNGAG00000001905	Urb1	100	77.997	Nannospalax_galili
MGP_PahariEiJ_G0016653	Urb1	80	45.248	ENSNBRG00000001049	urb1	98	45.103	Neolamprologus_brichardi
MGP_PahariEiJ_G0016653	Urb1	99	74.416	ENSNLEG00000026872	URB1	99	74.307	Nomascus_leucogenys
MGP_PahariEiJ_G0016653	Urb1	95	56.302	ENSMEUG00000010828	URB1	96	56.494	Notamacropus_eugenii
MGP_PahariEiJ_G0016653	Urb1	99	68.132	ENSOPRG00000013482	URB1	100	68.132	Ochotona_princeps
MGP_PahariEiJ_G0016653	Urb1	99	74.604	ENSODEG00000002587	URB1	99	74.604	Octodon_degus
MGP_PahariEiJ_G0016653	Urb1	99	44.086	ENSONIG00000005599	urb1	99	44.086	Oreochromis_niloticus
MGP_PahariEiJ_G0016653	Urb1	99	74.020	ENSOCUG00000009381	URB1	99	74.020	Oryctolagus_cuniculus
MGP_PahariEiJ_G0016653	Urb1	98	42.952	ENSORLG00000003429	urb1	99	42.952	Oryzias_latipes
MGP_PahariEiJ_G0016653	Urb1	98	43.241	ENSORLG00020013785	urb1	99	43.241	Oryzias_latipes_hni
MGP_PahariEiJ_G0016653	Urb1	94	46.454	ENSORLG00015019421	urb1	96	46.616	Oryzias_latipes_hsok
MGP_PahariEiJ_G0016653	Urb1	77	50.231	ENSOMEG00000002094	urb1	97	50.231	Oryzias_melastigma
MGP_PahariEiJ_G0016653	Urb1	99	74.615	ENSOGAG00000017140	URB1	99	74.824	Otolemur_garnettii
MGP_PahariEiJ_G0016653	Urb1	97	71.560	ENSOARG00000013679	URB1	99	71.560	Ovis_aries
MGP_PahariEiJ_G0016653	Urb1	99	76.771	ENSPPAG00000003423	URB1	99	76.727	Pan_paniscus
MGP_PahariEiJ_G0016653	Urb1	99	73.865	ENSPPRG00000023131	URB1	99	73.865	Panthera_pardus
MGP_PahariEiJ_G0016653	Urb1	91	72.700	ENSPTIG00000016125	URB1	98	72.700	Panthera_tigris_altaica
MGP_PahariEiJ_G0016653	Urb1	99	76.639	ENSPTRG00000013852	URB1	99	76.595	Pan_troglodytes
MGP_PahariEiJ_G0016653	Urb1	99	76.507	ENSPANG00000021964	URB1	99	76.507	Papio_anubis
MGP_PahariEiJ_G0016653	Urb1	98	45.386	ENSPKIG00000003683	urb1	98	45.430	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0016653	Urb1	99	85.997	ENSPEMG00000021205	Urb1	99	85.997	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0016653	Urb1	77	33.697	ENSPMAG00000009733	URB1	100	33.108	Petromyzon_marinus
MGP_PahariEiJ_G0016653	Urb1	99	60.605	ENSPCIG00000016350	URB1	99	60.764	Phascolarctos_cinereus
MGP_PahariEiJ_G0016653	Urb1	95	42.297	ENSPLAG00000004371	urb1	99	42.297	Poecilia_latipinna
MGP_PahariEiJ_G0016653	Urb1	99	42.845	ENSPMEG00000006634	urb1	99	42.920	Poecilia_mexicana
MGP_PahariEiJ_G0016653	Urb1	98	43.444	ENSPREG00000013453	urb1	98	43.521	Poecilia_reticulata
MGP_PahariEiJ_G0016653	Urb1	99	75.915	ENSPPYG00000011359	URB1	99	75.803	Pongo_abelii
MGP_PahariEiJ_G0016653	Urb1	99	62.952	ENSPCAG00000007430	URB1	99	62.952	Procavia_capensis
MGP_PahariEiJ_G0016653	Urb1	99	75.880	ENSPCOG00000022695	URB1	99	75.880	Propithecus_coquereli
MGP_PahariEiJ_G0016653	Urb1	99	72.283	ENSPVAG00000000889	URB1	99	72.283	Pteropus_vampyrus
MGP_PahariEiJ_G0016653	Urb1	99	43.078	ENSPNYG00000010589	urb1	99	42.990	Pundamilia_nyererei
MGP_PahariEiJ_G0016653	Urb1	99	39.509	ENSPNAG00000019324	urb1	99	39.641	Pygocentrus_nattereri
MGP_PahariEiJ_G0016653	Urb1	100	91.045	ENSRNOG00000002080	Urb1	100	91.220	Rattus_norvegicus
MGP_PahariEiJ_G0016653	Urb1	99	75.715	ENSRBIG00000033122	URB1	99	75.715	Rhinopithecus_bieti
MGP_PahariEiJ_G0016653	Urb1	99	75.759	ENSRROG00000040237	URB1	99	75.759	Rhinopithecus_roxellana
MGP_PahariEiJ_G0016653	Urb1	99	76.561	ENSSBOG00000027672	URB1	99	76.561	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0016653	Urb1	99	60.778	ENSSHAG00000005140	URB1	100	60.778	Sarcophilus_harrisii
MGP_PahariEiJ_G0016653	Urb1	93	45.565	ENSSFOG00015000339	urb1	99	45.706	Scleropages_formosus
MGP_PahariEiJ_G0016653	Urb1	99	43.012	ENSSMAG00000003782	urb1	99	42.919	Scophthalmus_maximus
MGP_PahariEiJ_G0016653	Urb1	99	43.704	ENSSDUG00000012313	urb1	99	43.704	Seriola_dumerili
MGP_PahariEiJ_G0016653	Urb1	99	43.617	ENSSLDG00000023179	urb1	99	43.617	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0016653	Urb1	99	52.939	ENSSPUG00000012447	URB1	99	52.939	Sphenodon_punctatus
MGP_PahariEiJ_G0016653	Urb1	99	43.610	ENSSPAG00000006325	urb1	99	43.654	Stegastes_partitus
MGP_PahariEiJ_G0016653	Urb1	99	72.376	ENSSSCG00000032024	URB1	99	72.376	Sus_scrofa
MGP_PahariEiJ_G0016653	Urb1	73	56.887	ENSTGUG00000013442	URB1	100	56.828	Taeniopygia_guttata
MGP_PahariEiJ_G0016653	Urb1	98	43.599	ENSTRUG00000009372	urb1	98	43.599	Takifugu_rubripes
MGP_PahariEiJ_G0016653	Urb1	99	42.576	ENSTNIG00000016277	urb1	99	42.576	Tetraodon_nigroviridis
MGP_PahariEiJ_G0016653	Urb1	81	78.963	ENSTBEG00000010044	URB1	81	78.963	Tupaia_belangeri
MGP_PahariEiJ_G0016653	Urb1	90	74.113	ENSTTRG00000007712	URB1	92	74.530	Tursiops_truncatus
MGP_PahariEiJ_G0016653	Urb1	99	73.504	ENSUAMG00000012231	URB1	99	73.504	Ursus_americanus
MGP_PahariEiJ_G0016653	Urb1	92	74.023	ENSUMAG00000017419	URB1	99	73.896	Ursus_maritimus
MGP_PahariEiJ_G0016653	Urb1	68	84.921	ENSVPAG00000001164	URB1	68	84.921	Vicugna_pacos
MGP_PahariEiJ_G0016653	Urb1	99	74.099	ENSVVUG00000000551	URB1	99	74.055	Vulpes_vulpes
MGP_PahariEiJ_G0016653	Urb1	99	48.423	ENSXETG00000009895	urb1	99	48.423	Xenopus_tropicalis
MGP_PahariEiJ_G0016653	Urb1	99	41.101	ENSXCOG00000005500	urb1	99	41.101	Xiphophorus_couchianus
MGP_PahariEiJ_G0016653	Urb1	99	40.989	ENSXMAG00000007253	urb1	99	40.989	Xiphophorus_maculatus