EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0016656 (Gene tree)
Gene ID: 110329565
Gene Symbol: Synj1
Alias: A930006D20Rik
Full Name: synaptojanin 1
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Minus strand
Length: 74037 bases
Position: chr12:82007015-82081051
Accession: 110329565
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0029600	Exo_endo_phos	PF03372.23	1e-14	1	1
MGP_PahariEiJ_P0029602	Exo_endo_phos	PF03372.23	1e-14	1	1
MGP_PahariEiJ_P0029599	Exo_endo_phos	PF03372.23	1.5e-14	1	1
MGP_PahariEiJ_P0029607	Exo_endo_phos	PF03372.23	2.5e-07	1	1
MGP_PahariEiJ_P0029600	DUF1866	PF08952.11	1.3e-57	1	1
MGP_PahariEiJ_P0029602	DUF1866	PF08952.11	1.3e-57	1	1
MGP_PahariEiJ_P0029599	DUF1866	PF08952.11	1.6e-57	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0029602	-	4771	-	MGP_PahariEiJ_P0029602	1323 (aa)	-	-
MGP_PahariEiJ_T0029603	-	772	-	-	- (aa)	-	-
MGP_PahariEiJ_T0029600	-	6989	XM_021209246	MGP_PahariEiJ_P0029600	1309 (aa)	XP_021064905	UPI000A313CAD
MGP_PahariEiJ_T0029601	-	3474	-	MGP_PahariEiJ_P0029601	188 (aa)	-	-
MGP_PahariEiJ_T0029606	-	2743	-	-	- (aa)	-	-
MGP_PahariEiJ_T0029607	-	2189	-	MGP_PahariEiJ_P0029607	693 (aa)	-	-
MGP_PahariEiJ_T0029604	-	547	-	MGP_PahariEiJ_P0029604	103 (aa)	-	-
MGP_PahariEiJ_T0029605	-	354	-	MGP_PahariEiJ_P0029605	117 (aa)	-	-
MGP_PahariEiJ_T0029608	-	942	-	-	- (aa)	-	-
MGP_PahariEiJ_T0029599	-	7063	XM_021209245	MGP_PahariEiJ_P0029599	1607 (aa)	XP_021064904	UPI000A305B20

Gene Model

Click here to download MGP_PahariEiJ_G0016656's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0016656's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PahariEiJ_G0016656	Synj1	100	59.626	MGP_PahariEiJ_G0023344	Synj2	99	59.431

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0016656	Synj1	100	97.691	ENSG00000159082	SYNJ1	99	97.691	Homo_sapiens
MGP_PahariEiJ_G0016656	Synj1	100	83.453	ENSAPOG00000002809	synj1	92	71.528	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0016656	Synj1	100	96.006	ENSAMEG00000015028	SYNJ1	100	88.057	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0016656	Synj1	100	79.568	ENSACIG00000008857	synj1	97	66.967	Amphilophus_citrinellus
MGP_PahariEiJ_G0016656	Synj1	100	82.878	ENSAOCG00000009835	synj1	96	68.168	Amphiprion_ocellaris
MGP_PahariEiJ_G0016656	Synj1	100	82.878	ENSAPEG00000021010	synj1	90	63.684	Amphiprion_percula
MGP_PahariEiJ_G0016656	Synj1	100	82.302	ENSATEG00000002306	synj1	89	63.510	Anabas_testudineus
MGP_PahariEiJ_G0016656	Synj1	100	91.335	ENSAPLG00000011832	SYNJ1	100	77.687	Anas_platyrhynchos
MGP_PahariEiJ_G0016656	Synj1	100	90.442	ENSACAG00000003006	-	100	83.562	Anolis_carolinensis
MGP_PahariEiJ_G0016656	Synj1	100	97.403	ENSANAG00000027325	SYNJ1	100	92.917	Aotus_nancymaae
MGP_PahariEiJ_G0016656	Synj1	100	82.734	ENSACLG00000002255	synj1	95	68.405	Astatotilapia_calliptera
MGP_PahariEiJ_G0016656	Synj1	100	83.046	ENSAMXG00000008208	synj1	95	59.484	Astyanax_mexicanus
MGP_PahariEiJ_G0016656	Synj1	100	97.258	ENSBTAG00000003063	SYNJ1	100	92.121	Bos_taurus
MGP_PahariEiJ_G0016656	Synj1	100	97.980	ENSCJAG00000009187	SYNJ1	100	92.993	Callithrix_jacchus
MGP_PahariEiJ_G0016656	Synj1	100	97.258	ENSCAFG00000009041	SYNJ1	100	87.888	Canis_familiaris
MGP_PahariEiJ_G0016656	Synj1	100	97.691	ENSCAFG00020025776	SYNJ1	98	87.985	Canis_lupus_dingo
MGP_PahariEiJ_G0016656	Synj1	100	97.403	ENSCHIG00000005095	SYNJ1	100	84.341	Capra_hircus
MGP_PahariEiJ_G0016656	Synj1	100	97.114	ENSTSYG00000014541	SYNJ1	100	91.997	Carlito_syrichta
MGP_PahariEiJ_G0016656	Synj1	89	88.038	ENSCAPG00000014483	SYNJ1	99	77.409	Cavia_aperea
MGP_PahariEiJ_G0016656	Synj1	100	97.835	ENSCPOG00000012182	SYNJ1	100	93.369	Cavia_porcellus
MGP_PahariEiJ_G0016656	Synj1	100	97.403	ENSCCAG00000020825	SYNJ1	100	92.688	Cebus_capucinus
MGP_PahariEiJ_G0016656	Synj1	100	97.835	ENSCATG00000033891	SYNJ1	100	92.988	Cercocebus_atys
MGP_PahariEiJ_G0016656	Synj1	100	97.547	ENSCLAG00000009796	SYNJ1	100	97.547	Chinchilla_lanigera
MGP_PahariEiJ_G0016656	Synj1	100	96.148	ENSCSAG00000009654	SYNJ1	100	94.131	Chlorocebus_sabaeus
MGP_PahariEiJ_G0016656	Synj1	83	100.000	ENSCHOG00000012390	SYNJ1	87	90.554	Choloepus_hoffmanni
MGP_PahariEiJ_G0016656	Synj1	100	93.506	ENSCPBG00000006402	SYNJ1	97	87.379	Chrysemys_picta_bellii
MGP_PahariEiJ_G0016656	Synj1	100	97.835	ENSCANG00000031359	SYNJ1	100	92.988	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0016656	Synj1	100	98.124	ENSCGRG00001010861	Synj1	100	96.333	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0016656	Synj1	100	98.124	ENSCGRG00000015749	Synj1	100	98.124	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0016656	Synj1	100	81.223	ENSCSEG00000019614	synj1	99	68.405	Cynoglossus_semilaevis
MGP_PahariEiJ_G0016656	Synj1	100	77.503	ENSCVAG00000019250	synj1	93	67.553	Cyprinodon_variegatus
MGP_PahariEiJ_G0016656	Synj1	100	81.935	ENSDARG00000025011	synj1	96	70.353	Danio_rerio
MGP_PahariEiJ_G0016656	Synj1	100	89.235	ENSDNOG00000010732	SYNJ1	99	83.889	Dasypus_novemcinctus
MGP_PahariEiJ_G0016656	Synj1	100	97.835	ENSDORG00000014735	-	100	97.835	Dipodomys_ordii
MGP_PahariEiJ_G0016656	Synj1	86	95.726	ENSETEG00000018674	SYNJ1	72	95.726	Echinops_telfairi
MGP_PahariEiJ_G0016656	Synj1	100	97.691	ENSEASG00005006287	SYNJ1	98	93.243	Equus_asinus_asinus
MGP_PahariEiJ_G0016656	Synj1	100	97.547	ENSECAG00000004829	SYNJ1	100	88.441	Equus_caballus
MGP_PahariEiJ_G0016656	Synj1	83	100.000	ENSEEUG00000005150	SYNJ1	95	87.992	Erinaceus_europaeus
MGP_PahariEiJ_G0016656	Synj1	100	81.583	ENSELUG00000009731	synj1	95	66.387	Esox_lucius
MGP_PahariEiJ_G0016656	Synj1	100	97.547	ENSFCAG00000012498	SYNJ1	100	91.324	Felis_catus
MGP_PahariEiJ_G0016656	Synj1	74	77.835	ENSFALG00000004680	SYNJ1	100	69.316	Ficedula_albicollis
MGP_PahariEiJ_G0016656	Synj1	100	97.980	ENSFDAG00000016818	SYNJ1	100	97.980	Fukomys_damarensis
MGP_PahariEiJ_G0016656	Synj1	100	81.081	ENSFHEG00000017689	synj1	95	60.432	Fundulus_heteroclitus
MGP_PahariEiJ_G0016656	Synj1	93	79.268	ENSGMOG00000014852	synj1	77	72.620	Gadus_morhua
MGP_PahariEiJ_G0016656	Synj1	100	92.641	ENSGALG00000034317	SYNJ1	100	74.107	Gallus_gallus
MGP_PahariEiJ_G0016656	Synj1	100	82.302	ENSGAFG00000019466	synj1	89	61.177	Gambusia_affinis
MGP_PahariEiJ_G0016656	Synj1	98	76.301	ENSGACG00000020575	synj1	92	64.961	Gasterosteus_aculeatus
MGP_PahariEiJ_G0016656	Synj1	100	93.651	ENSGAGG00000022523	SYNJ1	100	84.974	Gopherus_agassizii
MGP_PahariEiJ_G0016656	Synj1	100	97.691	ENSGGOG00000015945	SYNJ1	100	92.835	Gorilla_gorilla
MGP_PahariEiJ_G0016656	Synj1	100	81.366	ENSHBUG00000007774	synj1	96	69.727	Haplochromis_burtoni
MGP_PahariEiJ_G0016656	Synj1	100	97.980	ENSHGLG00000006420	SYNJ1	100	97.980	Heterocephalus_glaber_female
MGP_PahariEiJ_G0016656	Synj1	100	97.980	ENSHGLG00100012591	SYNJ1	100	97.980	Heterocephalus_glaber_male
MGP_PahariEiJ_G0016656	Synj1	100	77.122	ENSHCOG00000012774	synj1	86	71.906	Hippocampus_comes
MGP_PahariEiJ_G0016656	Synj1	100	83.022	ENSIPUG00000010691	SYNJ1	95	61.320	Ictalurus_punctatus
MGP_PahariEiJ_G0016656	Synj1	100	97.980	ENSSTOG00000015806	SYNJ1	100	95.503	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0016656	Synj1	99	89.084	ENSJJAG00000020168	Synj1	100	85.136	Jaculus_jaculus
MGP_PahariEiJ_G0016656	Synj1	100	82.302	ENSKMAG00000004221	synj1	94	72.636	Kryptolebias_marmoratus
MGP_PahariEiJ_G0016656	Synj1	100	81.674	ENSLBEG00000015081	synj1	97	66.114	Labrus_bergylta
MGP_PahariEiJ_G0016656	Synj1	100	86.686	ENSLACG00000005928	SYNJ1	96	71.021	Latimeria_chalumnae
MGP_PahariEiJ_G0016656	Synj1	100	84.495	ENSLOCG00000009230	synj1	100	70.244	Lepisosteus_oculatus
MGP_PahariEiJ_G0016656	Synj1	100	95.578	ENSLAFG00000011806	SYNJ1	99	86.481	Loxodonta_africana
MGP_PahariEiJ_G0016656	Synj1	94	97.550	ENSMFAG00000018883	SYNJ1	99	93.214	Macaca_fascicularis
MGP_PahariEiJ_G0016656	Synj1	100	96.576	ENSMMUG00000004624	SYNJ1	100	93.840	Macaca_mulatta
MGP_PahariEiJ_G0016656	Synj1	100	97.835	ENSMNEG00000040077	SYNJ1	95	94.073	Macaca_nemestrina
MGP_PahariEiJ_G0016656	Synj1	100	97.835	ENSMLEG00000037029	SYNJ1	100	92.988	Mandrillus_leucophaeus
MGP_PahariEiJ_G0016656	Synj1	100	83.022	ENSMAMG00000013404	synj1	89	62.022	Mastacembelus_armatus
MGP_PahariEiJ_G0016656	Synj1	100	82.734	ENSMZEG00005024358	synj1	96	67.997	Maylandia_zebra
MGP_PahariEiJ_G0016656	Synj1	100	89.392	ENSMGAG00000014522	SYNJ1	100	76.981	Meleagris_gallopavo
MGP_PahariEiJ_G0016656	Synj1	100	98.124	ENSMAUG00000009743	Synj1	100	98.124	Mesocricetus_auratus
MGP_PahariEiJ_G0016656	Synj1	100	97.547	ENSMICG00000034953	SYNJ1	100	92.759	Microcebus_murinus
MGP_PahariEiJ_G0016656	Synj1	100	81.277	ENSMMOG00000010203	synj1	97	67.769	Mola_mola
MGP_PahariEiJ_G0016656	Synj1	100	86.020	ENSMODG00000021073	SYNJ1	100	78.880	Monodelphis_domestica
MGP_PahariEiJ_G0016656	Synj1	100	82.734	ENSMALG00000014015	synj1	96	60.636	Monopterus_albus
MGP_PahariEiJ_G0016656	Synj1	100	99.278	MGP_CAROLIEiJ_G0020951	Synj1	100	99.278	Mus_caroli
MGP_PahariEiJ_G0016656	Synj1	100	99.711	ENSMUSG00000022973	Synj1	100	99.711	Mus_musculus
MGP_PahariEiJ_G0016656	Synj1	100	99.711	MGP_SPRETEiJ_G0021857	Synj1	100	99.711	Mus_spretus
MGP_PahariEiJ_G0016656	Synj1	100	96.170	ENSMPUG00000001153	SYNJ1	100	87.689	Mustela_putorius_furo
MGP_PahariEiJ_G0016656	Synj1	62	82.864	ENSMLUG00000005764	-	100	72.946	Myotis_lucifugus
MGP_PahariEiJ_G0016656	Synj1	94	94.946	ENSMLUG00000026584	-	100	94.815	Myotis_lucifugus
MGP_PahariEiJ_G0016656	Synj1	100	98.268	ENSNGAG00000000453	Synj1	100	98.268	Nannospalax_galili
MGP_PahariEiJ_G0016656	Synj1	100	82.878	ENSNBRG00000011936	synj1	97	64.459	Neolamprologus_brichardi
MGP_PahariEiJ_G0016656	Synj1	88	89.981	ENSNLEG00000003734	SYNJ1	100	88.550	Nomascus_leucogenys
MGP_PahariEiJ_G0016656	Synj1	89	79.614	ENSMEUG00000004158	-	73	77.465	Notamacropus_eugenii
MGP_PahariEiJ_G0016656	Synj1	100	90.300	ENSOPRG00000013602	SYNJ1	93	92.927	Ochotona_princeps
MGP_PahariEiJ_G0016656	Synj1	100	97.258	ENSODEG00000002409	-	100	97.258	Octodon_degus
MGP_PahariEiJ_G0016656	Synj1	100	81.792	ENSONIG00000004667	synj1	100	67.944	Oreochromis_niloticus
MGP_PahariEiJ_G0016656	Synj1	94	91.964	ENSOANG00000006929	SYNJ1	96	77.409	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0016656	Synj1	100	95.578	ENSOCUG00000001420	SYNJ1	100	84.747	Oryctolagus_cuniculus
MGP_PahariEiJ_G0016656	Synj1	100	81.295	ENSORLG00000004320	synj1	96	67.270	Oryzias_latipes
MGP_PahariEiJ_G0016656	Synj1	100	77.809	ENSORLG00020011994	synj1	96	67.920	Oryzias_latipes_hni
MGP_PahariEiJ_G0016656	Synj1	100	81.439	ENSORLG00015018077	synj1	93	59.316	Oryzias_latipes_hsok
MGP_PahariEiJ_G0016656	Synj1	100	82.014	ENSOMEG00000014322	synj1	97	66.123	Oryzias_melastigma
MGP_PahariEiJ_G0016656	Synj1	100	89.158	ENSOGAG00000006010	SYNJ1	100	84.809	Otolemur_garnettii
MGP_PahariEiJ_G0016656	Synj1	100	95.745	ENSOARG00000013414	SYNJ1	98	85.597	Ovis_aries
MGP_PahariEiJ_G0016656	Synj1	100	97.691	ENSPPAG00000026784	SYNJ1	100	92.988	Pan_paniscus
MGP_PahariEiJ_G0016656	Synj1	100	97.691	ENSPPRG00000023469	SYNJ1	100	91.400	Panthera_pardus
MGP_PahariEiJ_G0016656	Synj1	100	97.547	ENSPTIG00000007930	SYNJ1	100	91.324	Panthera_tigris_altaica
MGP_PahariEiJ_G0016656	Synj1	100	97.691	ENSPTRG00000048135	-	100	89.125	Pan_troglodytes
MGP_PahariEiJ_G0016656	Synj1	100	97.691	ENSPTRG00000023787	SYNJ1	100	92.988	Pan_troglodytes
MGP_PahariEiJ_G0016656	Synj1	100	97.835	ENSPANG00000022531	SYNJ1	100	94.131	Papio_anubis
MGP_PahariEiJ_G0016656	Synj1	100	83.885	ENSPKIG00000022603	synj1	95	76.417	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0016656	Synj1	100	82.590	ENSPMGG00000016831	synj1	91	67.295	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0016656	Synj1	100	98.557	ENSPEMG00000018767	Synj1	100	98.557	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0016656	Synj1	100	64.124	ENSPMAG00000002887	synj1	96	53.170	Petromyzon_marinus
MGP_PahariEiJ_G0016656	Synj1	100	92.496	ENSPCIG00000016372	SYNJ1	100	86.050	Phascolarctos_cinereus
MGP_PahariEiJ_G0016656	Synj1	100	80.966	ENSPFOG00000016886	synj1	100	68.815	Poecilia_formosa
MGP_PahariEiJ_G0016656	Synj1	100	81.871	ENSPLAG00000017559	synj1	100	63.566	Poecilia_latipinna
MGP_PahariEiJ_G0016656	Synj1	100	81.727	ENSPMEG00000007643	synj1	89	61.442	Poecilia_mexicana
MGP_PahariEiJ_G0016656	Synj1	100	82.158	ENSPREG00000012412	synj1	98	67.235	Poecilia_reticulata
MGP_PahariEiJ_G0016656	Synj1	100	96.148	ENSPPYG00000011365	SYNJ1	98	92.369	Pongo_abelii
MGP_PahariEiJ_G0016656	Synj1	84	91.429	ENSPCAG00000009906	SYNJ1	84	91.429	Procavia_capensis
MGP_PahariEiJ_G0016656	Synj1	85	99.465	ENSPCOG00000024841	SYNJ1	99	87.248	Propithecus_coquereli
MGP_PahariEiJ_G0016656	Synj1	100	95.720	ENSPVAG00000000892	SYNJ1	100	84.221	Pteropus_vampyrus
MGP_PahariEiJ_G0016656	Synj1	100	82.734	ENSPNYG00000022989	synj1	97	67.222	Pundamilia_nyererei
MGP_PahariEiJ_G0016656	Synj1	100	82.878	ENSPNAG00000021119	synj1	91	77.153	Pygocentrus_nattereri
MGP_PahariEiJ_G0016656	Synj1	100	98.573	ENSRNOG00000002051	Synj1	100	97.942	Rattus_norvegicus
MGP_PahariEiJ_G0016656	Synj1	100	97.691	ENSRBIG00000034477	SYNJ1	100	92.988	Rhinopithecus_bieti
MGP_PahariEiJ_G0016656	Synj1	100	96.291	ENSRROG00000039256	SYNJ1	100	92.988	Rhinopithecus_roxellana
MGP_PahariEiJ_G0016656	Synj1	100	97.835	ENSSBOG00000021001	SYNJ1	100	92.841	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0016656	Synj1	100	92.063	ENSSHAG00000008538	SYNJ1	97	77.167	Sarcophilus_harrisii
MGP_PahariEiJ_G0016656	Synj1	100	83.165	ENSSFOG00015006095	synj1	95	62.183	Scleropages_formosus
MGP_PahariEiJ_G0016656	Synj1	100	82.014	ENSSMAG00000018066	synj1	95	66.418	Scophthalmus_maximus
MGP_PahariEiJ_G0016656	Synj1	100	82.734	ENSSDUG00000013058	synj1	96	61.070	Seriola_dumerili
MGP_PahariEiJ_G0016656	Synj1	100	82.302	ENSSLDG00000021406	synj1	96	68.405	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0016656	Synj1	76	94.019	ENSSARG00000009490	SYNJ1	75	95.865	Sorex_araneus
MGP_PahariEiJ_G0016656	Synj1	100	93.362	ENSSPUG00000012552	SYNJ1	94	76.831	Sphenodon_punctatus
MGP_PahariEiJ_G0016656	Synj1	100	83.165	ENSSPAG00000017029	synj1	97	65.723	Stegastes_partitus
MGP_PahariEiJ_G0016656	Synj1	89	83.280	ENSSPAG00000006812	SYNJ1	95	60.717	Stegastes_partitus
MGP_PahariEiJ_G0016656	Synj1	100	97.547	ENSSSCG00000012035	SYNJ1	100	92.348	Sus_scrofa
MGP_PahariEiJ_G0016656	Synj1	100	90.935	ENSTGUG00000013445	SYNJ1	100	75.797	Taeniopygia_guttata
MGP_PahariEiJ_G0016656	Synj1	100	81.727	ENSTRUG00000006907	synj1	96	59.923	Takifugu_rubripes
MGP_PahariEiJ_G0016656	Synj1	100	76.999	ENSTNIG00000009940	synj1	100	66.133	Tetraodon_nigroviridis
MGP_PahariEiJ_G0016656	Synj1	92	99.465	ENSTBEG00000016298	SYNJ1	92	87.154	Tupaia_belangeri
MGP_PahariEiJ_G0016656	Synj1	100	89.872	ENSTTRG00000002222	SYNJ1	100	77.813	Tursiops_truncatus
MGP_PahariEiJ_G0016656	Synj1	100	97.691	ENSUAMG00000018606	SYNJ1	99	95.426	Ursus_americanus
MGP_PahariEiJ_G0016656	Synj1	100	97.691	ENSUMAG00000018419	SYNJ1	99	95.426	Ursus_maritimus
MGP_PahariEiJ_G0016656	Synj1	87	97.143	ENSVPAG00000001241	SYNJ1	87	97.143	Vicugna_pacos
MGP_PahariEiJ_G0016656	Synj1	100	97.835	ENSVVUG00000023125	SYNJ1	100	93.822	Vulpes_vulpes
MGP_PahariEiJ_G0016656	Synj1	100	85.127	ENSXETG00000009899	synj1	95	71.466	Xenopus_tropicalis
MGP_PahariEiJ_G0016656	Synj1	100	81.081	ENSXCOG00000011896	synj1	97	69.314	Xiphophorus_couchianus
MGP_PahariEiJ_G0016656	Synj1	100	80.797	ENSXMAG00000017524	synj1	97	70.724	Xiphophorus_maculatus