EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0016776 (Gene tree)
Gene ID: 110330207
Gene Symbol: Rab1a
Alias: Gtbp|Rab-1|Rab1|Ypt1|ras-related YPT1 protein
Full Name: RAB1A%2C member RAS oncogene family
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Minus strand
Length: 25633 bases
Position: chr13:10320892-10346524
Accession: 110330207
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0030169	MMR_HSR1	PF01926.23	2.6e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0030169	-	2600	-	MGP_PahariEiJ_P0030169	205 (aa)	XP_021065843	UPI0000001259
MGP_PahariEiJ_T0030170	-	711	-	-	- (aa)	-	-
MGP_PahariEiJ_T0030171	-	953	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0016776's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0016776's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PahariEiJ_G0016776	Rab1a	95	43.367	MGP_PahariEiJ_G0031135	Rab5b	90	43.367
MGP_PahariEiJ_G0016776	Rab1a	97	46.465	MGP_PahariEiJ_G0030259	Rab2b	92	46.465
MGP_PahariEiJ_G0016776	Rab1a	82	45.833	MGP_PahariEiJ_G0026616	Rab25	80	45.833
MGP_PahariEiJ_G0016776	Rab1a	85	52.299	MGP_PahariEiJ_G0015211	Rab11a	100	50.000
MGP_PahariEiJ_G0016776	Rab1a	76	38.994	MGP_PahariEiJ_G0032112	Rab9	79	38.994
MGP_PahariEiJ_G0016776	Rab1a	62	30.303	MGP_PahariEiJ_G0026509	Arl14	65	30.303
MGP_PahariEiJ_G0016776	Rab1a	94	45.361	MGP_PahariEiJ_G0018716	Rab18	93	45.361
MGP_PahariEiJ_G0016776	Rab1a	81	33.735	MGP_PahariEiJ_G0027261	Rab23	70	33.735
MGP_PahariEiJ_G0016776	Rab1a	95	38.660	MGP_PahariEiJ_G0026193	Rab22a	97	38.660
MGP_PahariEiJ_G0016776	Rab1a	76	38.994	MGP_PahariEiJ_G0031967	Rab9b	79	38.994
MGP_PahariEiJ_G0016776	Rab1a	57	31.933	MGP_PahariEiJ_G0029472	Arl4a	59	31.933
MGP_PahariEiJ_G0016776	Rab1a	69	30.201	MGP_PahariEiJ_G0018357	Arl4d	73	30.201
MGP_PahariEiJ_G0016776	Rab1a	81	50.602	MGP_PahariEiJ_G0013212	Rab30	82	50.602
MGP_PahariEiJ_G0016776	Rab1a	95	38.776	MGP_PahariEiJ_G0020817	Rab31	97	38.776
MGP_PahariEiJ_G0016776	Rab1a	80	38.415	MGP_PahariEiJ_G0022808	Kras	93	36.723
MGP_PahariEiJ_G0016776	Rab1a	94	36.410	MGP_PahariEiJ_G0015453	Rab6b	94	36.410
MGP_PahariEiJ_G0016776	Rab1a	57	32.203	MGP_PahariEiJ_G0022456	Arl8b	61	32.203
MGP_PahariEiJ_G0016776	Rab1a	58	34.454	MGP_PahariEiJ_G0027868	Arl8a	62	34.454
MGP_PahariEiJ_G0016776	Rab1a	95	43.590	MGP_PahariEiJ_G0018314	Rab5c	89	43.590
MGP_PahariEiJ_G0016776	Rab1a	80	35.928	MGP_PahariEiJ_G0015431	Mras	80	35.928
MGP_PahariEiJ_G0016776	Rab1a	57	31.092	MGP_PahariEiJ_G0027638	Arl4c	61	31.092
MGP_PahariEiJ_G0016776	Rab1a	84	35.593	MGP_PahariEiJ_G0013880	Hras	93	35.593
MGP_PahariEiJ_G0016776	Rab1a	94	43.434	MGP_PahariEiJ_G0031589	Rab33a	83	43.434
MGP_PahariEiJ_G0016776	Rab1a	80	50.909	MGP_PahariEiJ_G0029630	Rab15	78	50.909
MGP_PahariEiJ_G0016776	Rab1a	99	53.960	MGP_PahariEiJ_G0024212	Rab35	100	53.960
MGP_PahariEiJ_G0016776	Rab1a	75	37.580	MGP_PahariEiJ_G0020181	Rabl2	67	37.580
MGP_PahariEiJ_G0016776	Rab1a	95	33.175	MGP_PahariEiJ_G0030851	Rab36	79	33.175
MGP_PahariEiJ_G0016776	Rab1a	96	50.761	MGP_PahariEiJ_G0026671	Rab13	98	50.761
MGP_PahariEiJ_G0016776	Rab1a	99	92.079	MGP_PahariEiJ_G0014033	Rab1b	100	92.079
MGP_PahariEiJ_G0016776	Rab1a	77	39.752	MGP_PahariEiJ_G0017931	Rab34	62	39.752
MGP_PahariEiJ_G0016776	Rab1a	94	37.879	MGP_PahariEiJ_G0013273	Rab6a	94	37.879
MGP_PahariEiJ_G0016776	Rab1a	80	38.415	MGP_PahariEiJ_G0026889	Nras	96	39.041
MGP_PahariEiJ_G0016776	Rab1a	83	43.429	MGP_PahariEiJ_G0026417	Rab33b	76	43.429
MGP_PahariEiJ_G0016776	Rab1a	90	48.108	MGP_PahariEiJ_G0023919	Rab2a	99	45.238
MGP_PahariEiJ_G0016776	Rab1a	81	45.238	MGP_PahariEiJ_G0018517	Rab37	78	45.238
MGP_PahariEiJ_G0016776	Rab1a	82	32.544	MGP_PahariEiJ_G0021797	Rheb	91	32.544
MGP_PahariEiJ_G0016776	Rab1a	78	39.264	MGP_PahariEiJ_G0022362	Rab7	98	39.583
MGP_PahariEiJ_G0016776	Rab1a	68	30.496	MGP_PahariEiJ_G0014529	Arl3	72	30.496
MGP_PahariEiJ_G0016776	Rab1a	57	33.058	MGP_PahariEiJ_G0014091	Arl2	61	33.058
MGP_PahariEiJ_G0016776	Rab1a	99	44.554	MGP_PahariEiJ_G0024934	Rab14	93	44.554
MGP_PahariEiJ_G0016776	Rab1a	100	45.581	MGP_PahariEiJ_G0020420	Rab11b	99	45.581
MGP_PahariEiJ_G0016776	Rab1a	82	50.296	MGP_PahariEiJ_G0020826	Rab12	78	46.561
MGP_PahariEiJ_G0016776	Rab1a	77	49.045	MGP_PahariEiJ_G0020730	Rab5a	84	49.045

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	ENSG00000138069	RAB1A	100	100.000	Homo_sapiens
MGP_PahariEiJ_G0016776	Rab1a	99	95.545	ENSAPOG00000008143	-	100	95.545	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	ENSAMEG00000001127	RAB1A	100	100.000	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0016776	Rab1a	99	95.545	ENSAOCG00000020606	-	100	95.545	Amphiprion_ocellaris
MGP_PahariEiJ_G0016776	Rab1a	99	95.545	ENSAPEG00000022488	-	100	95.545	Amphiprion_percula
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	ENSANAG00000020929	RAB1A	100	100.000	Aotus_nancymaae
MGP_PahariEiJ_G0016776	Rab1a	99	96.040	ENSACLG00000003326	-	100	96.040	Astatotilapia_calliptera
MGP_PahariEiJ_G0016776	Rab1a	99	94.554	ENSAMXG00000034850	-	100	94.554	Astyanax_mexicanus
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	ENSBTAG00000016720	RAB1A	100	100.000	Bos_taurus
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	ENSCJAG00000046275	RAB1A	100	100.000	Callithrix_jacchus
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	ENSCAFG00000003187	RAB1A	100	100.000	Canis_familiaris
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	ENSCAFG00020026971	RAB1A	100	100.000	Canis_lupus_dingo
MGP_PahariEiJ_G0016776	Rab1a	96	100.000	ENSCHIG00000014060	RAB1A	96	100.000	Capra_hircus
MGP_PahariEiJ_G0016776	Rab1a	100	98.049	ENSTSYG00000005996	RAB1A	100	100.000	Carlito_syrichta
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	ENSCPOG00000015437	RAB1A	100	100.000	Cavia_porcellus
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	ENSCCAG00000021869	RAB1A	100	100.000	Cebus_capucinus
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	ENSCATG00000030853	RAB1A	100	100.000	Cercocebus_atys
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	ENSCLAG00000014766	RAB1A	100	100.000	Chinchilla_lanigera
MGP_PahariEiJ_G0016776	Rab1a	100	99.512	ENSCPBG00000013243	RAB1A	100	99.512	Chrysemys_picta_bellii
MGP_PahariEiJ_G0016776	Rab1a	100	97.561	ENSCANG00000035916	RAB1A	100	97.561	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	ENSCGRG00001012691	-	100	100.000	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	ENSCGRG00000008456	-	100	100.000	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	ENSDNOG00000018236	RAB1A	100	100.000	Dasypus_novemcinctus
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	ENSDORG00000028628	-	100	100.000	Dipodomys_ordii
MGP_PahariEiJ_G0016776	Rab1a	100	84.466	FBgn0285937	Rab1	100	84.466	Drosophila_melanogaster
MGP_PahariEiJ_G0016776	Rab1a	99	100.000	ENSETEG00000002205	RAB1A	100	100.000	Echinops_telfairi
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	ENSEASG00005007298	RAB1A	100	100.000	Equus_asinus_asinus
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	ENSECAG00000009926	RAB1A	100	100.000	Equus_caballus
MGP_PahariEiJ_G0016776	Rab1a	99	100.000	ENSEEUG00000011721	RAB1A	100	100.000	Erinaceus_europaeus
MGP_PahariEiJ_G0016776	Rab1a	99	95.588	ENSELUG00000012166	RAB1A	96	95.588	Esox_lucius
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	ENSFCAG00000002536	RAB1A	100	100.000	Felis_catus
MGP_PahariEiJ_G0016776	Rab1a	99	97.537	ENSFALG00000013624	RAB1A	99	97.537	Ficedula_albicollis
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	ENSFDAG00000019505	-	100	100.000	Fukomys_damarensis
MGP_PahariEiJ_G0016776	Rab1a	99	94.554	ENSFHEG00000014414	-	100	94.554	Fundulus_heteroclitus
MGP_PahariEiJ_G0016776	Rab1a	100	99.512	ENSGALG00000031582	RAB1A	100	99.512	Gallus_gallus
MGP_PahariEiJ_G0016776	Rab1a	99	94.554	ENSGAFG00000000918	-	100	94.554	Gambusia_affinis
MGP_PahariEiJ_G0016776	Rab1a	100	99.512	ENSGAGG00000006802	RAB1A	100	99.512	Gopherus_agassizii
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	ENSGGOG00000026603	RAB1A	100	100.000	Gorilla_gorilla
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	ENSHGLG00000013585	RAB1A	100	100.000	Heterocephalus_glaber_female
MGP_PahariEiJ_G0016776	Rab1a	99	97.549	ENSHGLG00100007994	RAB1A	99	97.549	Heterocephalus_glaber_male
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	ENSSTOG00000020693	-	100	100.000	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0016776	Rab1a	96	100.000	ENSJJAG00000014396	Rab1a	100	100.000	Jaculus_jaculus
MGP_PahariEiJ_G0016776	Rab1a	96	95.431	ENSKMAG00000014038	-	93	95.431	Kryptolebias_marmoratus
MGP_PahariEiJ_G0016776	Rab1a	99	95.050	ENSLBEG00000028426	RAB1A	100	95.050	Labrus_bergylta
MGP_PahariEiJ_G0016776	Rab1a	100	98.537	ENSLACG00000012869	RAB1A	100	98.537	Latimeria_chalumnae
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	ENSLAFG00000016666	RAB1A	100	100.000	Loxodonta_africana
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	ENSMFAG00000046246	RAB1A	100	100.000	Macaca_fascicularis
MGP_PahariEiJ_G0016776	Rab1a	96	100.000	ENSMMUG00000021721	RAB1A	91	100.000	Macaca_mulatta
MGP_PahariEiJ_G0016776	Rab1a	95	99.485	ENSMNEG00000028414	-	97	99.485	Macaca_nemestrina
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	ENSMLEG00000042535	RAB1A	100	100.000	Mandrillus_leucophaeus
MGP_PahariEiJ_G0016776	Rab1a	99	96.040	ENSMZEG00005013959	-	100	96.040	Maylandia_zebra
MGP_PahariEiJ_G0016776	Rab1a	96	99.492	ENSMGAG00000004611	RAB1A	98	99.492	Meleagris_gallopavo
MGP_PahariEiJ_G0016776	Rab1a	100	99.512	ENSMAUG00000012156	Rab1a	100	99.512	Mesocricetus_auratus
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	ENSMICG00000012587	RAB1A	100	100.000	Microcebus_murinus
MGP_PahariEiJ_G0016776	Rab1a	100	99.512	ENSMOCG00000017022	Rab1a	100	99.512	Microtus_ochrogaster
MGP_PahariEiJ_G0016776	Rab1a	99	93.564	ENSMMOG00000018709	RAB1A	100	93.564	Mola_mola
MGP_PahariEiJ_G0016776	Rab1a	100	99.512	ENSMODG00000003340	RAB1A	100	99.512	Monodelphis_domestica
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	MGP_CAROLIEiJ_G0016115	Rab1a	100	100.000	Mus_caroli
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	ENSMUSG00000020149	Rab1a	100	100.000	Mus_musculus
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	Mus_spretus
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	ENSMPUG00000006139	RAB1A	82	100.000	Mustela_putorius_furo
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	ENSMLUG00000009489	RAB1A	100	100.000	Myotis_lucifugus
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	ENSNGAG00000005838	Rab1a	100	100.000	Nannospalax_galili
MGP_PahariEiJ_G0016776	Rab1a	99	96.040	ENSNBRG00000020492	-	100	96.040	Neolamprologus_brichardi
MGP_PahariEiJ_G0016776	Rab1a	96	100.000	ENSOPRG00000006595	RAB1A	100	100.000	Ochotona_princeps
MGP_PahariEiJ_G0016776	Rab1a	94	100.000	ENSODEG00000011248	-	96	100.000	Octodon_degus
MGP_PahariEiJ_G0016776	Rab1a	99	93.627	ENSONIG00000006819	-	100	93.627	Oreochromis_niloticus
MGP_PahariEiJ_G0016776	Rab1a	100	99.512	ENSOANG00000012438	RAB1A	100	99.512	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	ENSOCUG00000017003	RAB1A	100	100.000	Oryctolagus_cuniculus
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	ENSOGAG00000026181	RAB1A	100	100.000	Otolemur_garnettii
MGP_PahariEiJ_G0016776	Rab1a	96	100.000	ENSOARG00000019997	RAB1A	97	100.000	Ovis_aries
MGP_PahariEiJ_G0016776	Rab1a	99	100.000	ENSPPAG00000030253	RAB1A	100	100.000	Pan_paniscus
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	ENSPPRG00000025077	RAB1A	100	100.000	Panthera_pardus
MGP_PahariEiJ_G0016776	Rab1a	96	100.000	ENSPTIG00000013471	RAB1A	97	100.000	Panthera_tigris_altaica
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	ENSPTRG00000011989	RAB1A	100	100.000	Pan_troglodytes
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	ENSPANG00000010485	RAB1A	100	100.000	Papio_anubis
MGP_PahariEiJ_G0016776	Rab1a	99	96.552	ENSPSIG00000008028	RAB1A	99	96.552	Pelodiscus_sinensis
MGP_PahariEiJ_G0016776	Rab1a	99	95.588	ENSPMGG00000021015	-	99	95.588	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	ENSPEMG00000009340	Rab1a	100	100.000	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0016776	Rab1a	100	99.512	ENSPCIG00000023212	RAB1A	100	99.512	Phascolarctos_cinereus
MGP_PahariEiJ_G0016776	Rab1a	99	93.137	ENSPFOG00000000498	-	99	93.137	Poecilia_formosa
MGP_PahariEiJ_G0016776	Rab1a	99	94.059	ENSPLAG00000015592	-	100	94.059	Poecilia_latipinna
MGP_PahariEiJ_G0016776	Rab1a	99	94.059	ENSPMEG00000005288	-	100	94.059	Poecilia_mexicana
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	ENSPPYG00000012360	RAB1A	100	100.000	Pongo_abelii
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	ENSPCOG00000017244	RAB1A	100	100.000	Propithecus_coquereli
MGP_PahariEiJ_G0016776	Rab1a	99	96.040	ENSPNYG00000015841	-	100	96.040	Pundamilia_nyererei
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	ENSRNOG00000004992	Rab1a	100	100.000	Rattus_norvegicus
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	ENSSBOG00000023732	RAB1A	100	100.000	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0016776	Rab1a	98	98.010	ENSSHAG00000003597	RAB1A	98	98.010	Sarcophilus_harrisii
MGP_PahariEiJ_G0016776	Rab1a	99	95.545	ENSSMAG00000021049	-	100	95.545	Scophthalmus_maximus
MGP_PahariEiJ_G0016776	Rab1a	99	96.040	ENSSDUG00000022535	RAB1A	100	96.040	Seriola_dumerili
MGP_PahariEiJ_G0016776	Rab1a	100	99.512	ENSSPUG00000012822	RAB1A	100	99.512	Sphenodon_punctatus
MGP_PahariEiJ_G0016776	Rab1a	99	95.545	ENSSPAG00000012564	-	100	95.545	Stegastes_partitus
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	ENSSSCG00000008359	RAB1A	100	100.000	Sus_scrofa
MGP_PahariEiJ_G0016776	Rab1a	100	97.073	ENSTGUG00000002328	RAB1A	100	97.073	Taeniopygia_guttata
MGP_PahariEiJ_G0016776	Rab1a	99	95.050	ENSTRUG00000024994	RAB1A	100	95.050	Takifugu_rubripes
MGP_PahariEiJ_G0016776	Rab1a	96	100.000	ENSUMAG00000021038	RAB1A	99	100.000	Ursus_maritimus
MGP_PahariEiJ_G0016776	Rab1a	97	99.495	ENSVPAG00000005640	RAB1A	99	99.495	Vicugna_pacos
MGP_PahariEiJ_G0016776	Rab1a	100	100.000	ENSVVUG00000027588	RAB1A	100	100.000	Vulpes_vulpes
MGP_PahariEiJ_G0016776	Rab1a	99	94.554	ENSXMAG00000015776	-	100	94.554	Xiphophorus_maculatus