EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0016822 (Gene tree)
Gene ID: 110330585
Gene Symbol: Ddx56
Alias: 2600001H07Rik|D11Ertd619e|NOH61
Full Name: DEAD-box helicase 56
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Plus strand
Length: 9081 bases
Position: chr13:23092807-23101887
Accession: 110330585
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0030361	ResIII	PF04851.15	6.2e-07	1	1
MGP_PahariEiJ_P0030361	DEAD	PF00270.29	1.4e-39	1	1
MGP_PahariEiJ_P0030360	DEAD	PF00270.29	9.7e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0030363	-	538	-	-	- (aa)	-	-
MGP_PahariEiJ_T0030362	-	632	-	-	- (aa)	-	-
MGP_PahariEiJ_T0030361	-	1962	XM_021210805	MGP_PahariEiJ_P0030361	546 (aa)	XP_021066464	UPI000A30B935
MGP_PahariEiJ_T0030360	-	764	-	MGP_PahariEiJ_P0030360	236 (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0016822's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0016822's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PahariEiJ_G0016822	Ddx56	99	35.628	MGP_PahariEiJ_G0022748	Ddx47	86	38.462
MGP_PahariEiJ_G0016822	Ddx56	93	30.172	MGP_PahariEiJ_G0018622	-	67	30.137
MGP_PahariEiJ_G0016822	Ddx56	80	36.019	MGP_PahariEiJ_G0018018	Ddx52	61	31.852
MGP_PahariEiJ_G0016822	Ddx56	61	33.333	MGP_PahariEiJ_G0022883	Ddx39	74	35.583
MGP_PahariEiJ_G0016822	Ddx56	83	33.981	MGP_PahariEiJ_G0014991	Ddx6	74	30.273
MGP_PahariEiJ_G0016822	Ddx56	66	30.871	MGP_PahariEiJ_G0028260	D1Pas1	52	30.239
MGP_PahariEiJ_G0016822	Ddx56	97	30.579	MGP_PahariEiJ_G0016317	Eif4a2	63	30.870
MGP_PahariEiJ_G0016822	Ddx56	99	33.065	MGP_PahariEiJ_G0026142	Ddx27	53	31.019
MGP_PahariEiJ_G0016822	Ddx56	86	35.211	MGP_PahariEiJ_G0027892	Ddx59	56	30.729
MGP_PahariEiJ_G0016822	Ddx56	66	30.628	MGP_PahariEiJ_G0031487	Ddx3x	52	30.263
MGP_PahariEiJ_G0016822	Ddx56	53	39.583	MGP_PahariEiJ_G0023166	-	68	39.583
MGP_PahariEiJ_G0016822	Ddx56	85	48.387	MGP_PahariEiJ_G0029378	Ddx1	54	49.180

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0016822	Ddx56	100	90.676	ENSG00000136271	DDX56	100	93.514	Homo_sapiens
MGP_PahariEiJ_G0016822	Ddx56	98	66.935	ENSAPOG00000017113	ddx56	98	64.773	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0016822	Ddx56	100	87.546	ENSAMEG00000017711	DDX56	100	87.546	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0016822	Ddx56	92	59.763	ENSACIG00000013747	ddx56	98	67.403	Amphilophus_citrinellus
MGP_PahariEiJ_G0016822	Ddx56	97	65.984	ENSAOCG00000015447	-	87	65.503	Amphiprion_ocellaris
MGP_PahariEiJ_G0016822	Ddx56	97	65.984	ENSAOCG00000018059	ddx56	93	65.800	Amphiprion_ocellaris
MGP_PahariEiJ_G0016822	Ddx56	97	65.984	ENSAPEG00000007267	ddx56	99	63.620	Amphiprion_percula
MGP_PahariEiJ_G0016822	Ddx56	98	66.532	ENSATEG00000005279	ddx56	98	64.014	Anabas_testudineus
MGP_PahariEiJ_G0016822	Ddx56	99	66.667	ENSACLG00000020113	ddx56	98	64.493	Astatotilapia_calliptera
MGP_PahariEiJ_G0016822	Ddx56	97	64.372	ENSAMXG00000019357	ddx56	99	60.000	Astyanax_mexicanus
MGP_PahariEiJ_G0016822	Ddx56	100	90.293	ENSBTAG00000010602	DDX56	100	90.293	Bos_taurus
MGP_PahariEiJ_G0016822	Ddx56	96	40.541	WBGene00016073	C24H12.4	86	40.608	Caenorhabditis_elegans
MGP_PahariEiJ_G0016822	Ddx56	100	89.945	ENSCJAG00000012233	DDX56	100	89.945	Callithrix_jacchus
MGP_PahariEiJ_G0016822	Ddx56	82	85.874	ENSCAFG00000029295	DDX56	100	85.874	Canis_familiaris
MGP_PahariEiJ_G0016822	Ddx56	100	83.700	ENSCAFG00020019695	DDX56	100	83.700	Canis_lupus_dingo
MGP_PahariEiJ_G0016822	Ddx56	100	90.476	ENSCHIG00000014261	DDX56	100	90.476	Capra_hircus
MGP_PahariEiJ_G0016822	Ddx56	100	89.580	ENSTSYG00000008048	DDX56	100	90.128	Carlito_syrichta
MGP_PahariEiJ_G0016822	Ddx56	86	86.892	ENSCAPG00000006286	DDX56	100	86.892	Cavia_aperea
MGP_PahariEiJ_G0016822	Ddx56	100	87.569	ENSCPOG00000003359	DDX56	100	87.569	Cavia_porcellus
MGP_PahariEiJ_G0016822	Ddx56	100	89.214	ENSCCAG00000025303	DDX56	100	89.762	Cebus_capucinus
MGP_PahariEiJ_G0016822	Ddx56	100	90.476	ENSCATG00000039389	DDX56	100	90.476	Cercocebus_atys
MGP_PahariEiJ_G0016822	Ddx56	100	88.462	ENSCLAG00000007666	DDX56	100	88.462	Chinchilla_lanigera
MGP_PahariEiJ_G0016822	Ddx56	100	90.494	ENSCSAG00000015636	DDX56	100	90.494	Chlorocebus_sabaeus
MGP_PahariEiJ_G0016822	Ddx56	97	68.750	ENSCPBG00000024556	DDX56	97	68.750	Chrysemys_picta_bellii
MGP_PahariEiJ_G0016822	Ddx56	99	55.336	ENSCING00000005185	-	98	55.969	Ciona_intestinalis
MGP_PahariEiJ_G0016822	Ddx56	100	55.285	ENSCSAVG00000011266	-	99	54.743	Ciona_savignyi
MGP_PahariEiJ_G0016822	Ddx56	100	90.311	ENSCANG00000028187	DDX56	100	90.311	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0016822	Ddx56	100	93.956	ENSCGRG00001019019	Ddx56	100	93.956	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0016822	Ddx56	100	93.956	ENSCGRG00000011870	Ddx56	100	93.956	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0016822	Ddx56	98	67.339	ENSCSEG00000008368	ddx56	99	63.555	Cynoglossus_semilaevis
MGP_PahariEiJ_G0016822	Ddx56	98	68.145	ENSCVAG00000006499	ddx56	98	64.428	Cyprinodon_variegatus
MGP_PahariEiJ_G0016822	Ddx56	99	64.400	ENSDARG00000020913	ddx56	99	62.612	Danio_rerio
MGP_PahariEiJ_G0016822	Ddx56	86	86.017	ENSDNOG00000036526	DDX56	99	86.017	Dasypus_novemcinctus
MGP_PahariEiJ_G0016822	Ddx56	70	84.239	ENSDORG00000026173	-	100	92.973	Dipodomys_ordii
MGP_PahariEiJ_G0016822	Ddx56	99	47.200	FBgn0001565	Hlc	90	49.902	Drosophila_melanogaster
MGP_PahariEiJ_G0016822	Ddx56	87	59.368	ENSETEG00000019559	-	100	58.526	Echinops_telfairi
MGP_PahariEiJ_G0016822	Ddx56	94	72.199	ENSETEG00000002969	-	83	78.325	Echinops_telfairi
MGP_PahariEiJ_G0016822	Ddx56	100	58.730	ENSEBUG00000009986	ddx56	99	58.198	Eptatretus_burgeri
MGP_PahariEiJ_G0016822	Ddx56	100	89.927	ENSEASG00005017795	DDX56	100	89.927	Equus_asinus_asinus
MGP_PahariEiJ_G0016822	Ddx56	100	89.744	ENSECAG00000019897	DDX56	100	89.744	Equus_caballus
MGP_PahariEiJ_G0016822	Ddx56	86	87.712	ENSEEUG00000004849	DDX56	100	87.712	Erinaceus_europaeus
MGP_PahariEiJ_G0016822	Ddx56	97	67.073	ENSELUG00000004150	ddx56	97	66.052	Esox_lucius
MGP_PahariEiJ_G0016822	Ddx56	99	86.972	ENSFCAG00000010261	DDX56	99	87.156	Felis_catus
MGP_PahariEiJ_G0016822	Ddx56	100	88.278	ENSFDAG00000007128	DDX56	100	88.278	Fukomys_damarensis
MGP_PahariEiJ_G0016822	Ddx56	97	68.293	ENSFHEG00000018008	ddx56	95	67.677	Fundulus_heteroclitus
MGP_PahariEiJ_G0016822	Ddx56	98	67.339	ENSGAFG00000006906	ddx56	97	61.266	Gambusia_affinis
MGP_PahariEiJ_G0016822	Ddx56	94	71.595	ENSGAGG00000006789	DDX56	91	71.595	Gopherus_agassizii
MGP_PahariEiJ_G0016822	Ddx56	100	90.676	ENSGGOG00000012031	DDX56	100	90.676	Gorilla_gorilla
MGP_PahariEiJ_G0016822	Ddx56	99	66.667	ENSHBUG00000015246	ddx56	93	62.115	Haplochromis_burtoni
MGP_PahariEiJ_G0016822	Ddx56	100	89.194	ENSHGLG00000017271	DDX56	100	89.194	Heterocephalus_glaber_female
MGP_PahariEiJ_G0016822	Ddx56	100	89.194	ENSHGLG00100015731	DDX56	100	89.194	Heterocephalus_glaber_male
MGP_PahariEiJ_G0016822	Ddx56	98	66.935	ENSHCOG00000001685	ddx56	97	63.889	Hippocampus_comes
MGP_PahariEiJ_G0016822	Ddx56	99	64.400	ENSIPUG00000006602	ddx56	98	61.388	Ictalurus_punctatus
MGP_PahariEiJ_G0016822	Ddx56	100	88.828	ENSSTOG00000000464	DDX56	100	88.828	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0016822	Ddx56	99	90.406	ENSJJAG00000014269	Ddx56	100	90.406	Jaculus_jaculus
MGP_PahariEiJ_G0016822	Ddx56	97	67.480	ENSKMAG00000016611	ddx56	98	64.376	Kryptolebias_marmoratus
MGP_PahariEiJ_G0016822	Ddx56	97	66.803	ENSLBEG00000026281	ddx56	98	63.039	Labrus_bergylta
MGP_PahariEiJ_G0016822	Ddx56	97	66.483	ENSLACG00000015551	DDX56	97	66.849	Latimeria_chalumnae
MGP_PahariEiJ_G0016822	Ddx56	97	68.699	ENSLOCG00000015185	ddx56	99	63.458	Lepisosteus_oculatus
MGP_PahariEiJ_G0016822	Ddx56	99	87.454	ENSLAFG00000018206	DDX56	99	87.454	Loxodonta_africana
MGP_PahariEiJ_G0016822	Ddx56	100	90.659	ENSMFAG00000041001	DDX56	100	90.659	Macaca_fascicularis
MGP_PahariEiJ_G0016822	Ddx56	100	90.476	ENSMMUG00000002645	DDX56	100	90.476	Macaca_mulatta
MGP_PahariEiJ_G0016822	Ddx56	100	90.842	ENSMNEG00000028492	DDX56	100	90.842	Macaca_nemestrina
MGP_PahariEiJ_G0016822	Ddx56	100	90.476	ENSMLEG00000043591	DDX56	100	90.476	Mandrillus_leucophaeus
MGP_PahariEiJ_G0016822	Ddx56	97	67.623	ENSMAMG00000007776	ddx56	98	64.845	Mastacembelus_armatus
MGP_PahariEiJ_G0016822	Ddx56	99	66.667	ENSMZEG00005009813	ddx56	98	64.493	Maylandia_zebra
MGP_PahariEiJ_G0016822	Ddx56	100	90.494	ENSMICG00000005550	DDX56	100	90.494	Microcebus_murinus
MGP_PahariEiJ_G0016822	Ddx56	100	94.689	ENSMOCG00000016782	Ddx56	100	94.689	Microtus_ochrogaster
MGP_PahariEiJ_G0016822	Ddx56	97	66.667	ENSMMOG00000009654	ddx56	96	65.953	Mola_mola
MGP_PahariEiJ_G0016822	Ddx56	100	73.779	ENSMODG00000016137	DDX56	100	73.779	Monodelphis_domestica
MGP_PahariEiJ_G0016822	Ddx56	98	66.534	ENSMALG00000016910	ddx56	99	63.807	Monopterus_albus
MGP_PahariEiJ_G0016822	Ddx56	100	97.881	MGP_CAROLIEiJ_G0016069	Ddx56	100	97.436	Mus_caroli
MGP_PahariEiJ_G0016822	Ddx56	100	97.881	ENSMUSG00000004393	Ddx56	100	97.253	Mus_musculus
MGP_PahariEiJ_G0016822	Ddx56	100	97.881	MGP_SPRETEiJ_G0016911	Ddx56	100	97.253	Mus_spretus
MGP_PahariEiJ_G0016822	Ddx56	100	86.264	ENSMPUG00000018196	DDX56	88	86.264	Mustela_putorius_furo
MGP_PahariEiJ_G0016822	Ddx56	100	89.560	ENSMLUG00000003509	DDX56	100	89.744	Myotis_lucifugus
MGP_PahariEiJ_G0016822	Ddx56	100	90.842	ENSNGAG00000018785	Ddx56	100	90.842	Nannospalax_galili
MGP_PahariEiJ_G0016822	Ddx56	99	66.667	ENSNBRG00000002656	ddx56	93	63.938	Neolamprologus_brichardi
MGP_PahariEiJ_G0016822	Ddx56	100	91.042	ENSNLEG00000003816	DDX56	100	91.042	Nomascus_leucogenys
MGP_PahariEiJ_G0016822	Ddx56	96	78.776	ENSMEUG00000006788	DDX56	100	76.210	Notamacropus_eugenii
MGP_PahariEiJ_G0016822	Ddx56	100	87.751	ENSOPRG00000000292	-	100	87.751	Ochotona_princeps
MGP_PahariEiJ_G0016822	Ddx56	96	86.939	ENSODEG00000014807	DDX56	100	91.733	Octodon_degus
MGP_PahariEiJ_G0016822	Ddx56	99	66.667	ENSONIG00000011509	ddx56	98	65.549	Oreochromis_niloticus
MGP_PahariEiJ_G0016822	Ddx56	95	66.667	ENSOANG00000015987	-	95	68.873	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0016822	Ddx56	88	79.646	ENSOANG00000006320	-	100	69.043	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0016822	Ddx56	100	87.020	ENSOCUG00000022918	DDX56	100	87.751	Oryctolagus_cuniculus
MGP_PahariEiJ_G0016822	Ddx56	98	66.532	ENSORLG00000001434	ddx56	99	64.337	Oryzias_latipes
MGP_PahariEiJ_G0016822	Ddx56	98	66.532	ENSORLG00020015718	ddx56	95	64.674	Oryzias_latipes_hni
MGP_PahariEiJ_G0016822	Ddx56	98	66.532	ENSORLG00015003004	ddx56	94	65.027	Oryzias_latipes_hsok
MGP_PahariEiJ_G0016822	Ddx56	98	66.532	ENSOMEG00000022072	ddx56	98	64.973	Oryzias_melastigma
MGP_PahariEiJ_G0016822	Ddx56	100	88.483	ENSOGAG00000009981	DDX56	100	88.483	Otolemur_garnettii
MGP_PahariEiJ_G0016822	Ddx56	100	90.659	ENSOARG00000015240	DDX56	100	90.659	Ovis_aries
MGP_PahariEiJ_G0016822	Ddx56	100	72.495	ENSPPAG00000031263	-	100	72.313	Pan_paniscus
MGP_PahariEiJ_G0016822	Ddx56	100	86.691	ENSPPAG00000029147	DDX56	100	86.691	Pan_paniscus
MGP_PahariEiJ_G0016822	Ddx56	99	85.714	ENSPPRG00000014594	DDX56	99	86.447	Panthera_pardus
MGP_PahariEiJ_G0016822	Ddx56	86	84.501	ENSPTIG00000019500	DDX56	92	84.713	Panthera_tigris_altaica
MGP_PahariEiJ_G0016822	Ddx56	100	90.311	ENSPTRG00000019147	DDX56	100	90.311	Pan_troglodytes
MGP_PahariEiJ_G0016822	Ddx56	94	74.517	ENSPTRG00000052765	-	100	74.324	Pan_troglodytes
MGP_PahariEiJ_G0016822	Ddx56	100	90.476	ENSPANG00000002446	DDX56	100	90.476	Papio_anubis
MGP_PahariEiJ_G0016822	Ddx56	98	66.129	ENSPKIG00000018998	ddx56	98	64.130	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0016822	Ddx56	99	65.863	ENSPMGG00000017421	ddx56	96	66.023	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0016822	Ddx56	100	96.186	ENSPEMG00000018351	-	99	96.186	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0016822	Ddx56	100	81.884	ENSPCIG00000009336	DDX56	100	81.884	Phascolarctos_cinereus
MGP_PahariEiJ_G0016822	Ddx56	98	67.742	ENSPFOG00000018658	ddx56	97	63.553	Poecilia_formosa
MGP_PahariEiJ_G0016822	Ddx56	98	67.742	ENSPLAG00000019208	ddx56	97	63.842	Poecilia_latipinna
MGP_PahariEiJ_G0016822	Ddx56	98	67.742	ENSPMEG00000001775	ddx56	97	63.553	Poecilia_mexicana
MGP_PahariEiJ_G0016822	Ddx56	98	67.339	ENSPREG00000015142	ddx56	97	64.366	Poecilia_reticulata
MGP_PahariEiJ_G0016822	Ddx56	100	91.042	ENSPPYG00000017591	DDX56	100	91.042	Pongo_abelii
MGP_PahariEiJ_G0016822	Ddx56	96	87.097	ENSPCAG00000011499	DDX56	100	87.097	Procavia_capensis
MGP_PahariEiJ_G0016822	Ddx56	100	90.128	ENSPCOG00000024864	DDX56	100	90.128	Propithecus_coquereli
MGP_PahariEiJ_G0016822	Ddx56	88	92.093	ENSPVAG00000000791	DDX56	88	92.093	Pteropus_vampyrus
MGP_PahariEiJ_G0016822	Ddx56	99	66.265	ENSPNYG00000019212	ddx56	98	64.312	Pundamilia_nyererei
MGP_PahariEiJ_G0016822	Ddx56	98	65.323	ENSPNAG00000025446	ddx56	99	63.011	Pygocentrus_nattereri
MGP_PahariEiJ_G0016822	Ddx56	100	97.436	ENSRNOG00000004670	Ddx56	100	97.436	Rattus_norvegicus
MGP_PahariEiJ_G0016822	Ddx56	100	90.494	ENSRBIG00000030140	DDX56	100	90.494	Rhinopithecus_bieti
MGP_PahariEiJ_G0016822	Ddx56	100	90.128	ENSRROG00000044428	DDX56	100	90.128	Rhinopithecus_roxellana
MGP_PahariEiJ_G0016822	Ddx56	97	42.393	YLR276C	-	98	42.564	Saccharomyces_cerevisiae
MGP_PahariEiJ_G0016822	Ddx56	100	89.580	ENSSBOG00000034339	DDX56	100	89.580	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0016822	Ddx56	86	81.568	ENSSHAG00000016615	DDX56	99	81.568	Sarcophilus_harrisii
MGP_PahariEiJ_G0016822	Ddx56	98	65.328	ENSSFOG00015012795	ddx56	97	65.328	Scleropages_formosus
MGP_PahariEiJ_G0016822	Ddx56	98	67.339	ENSSMAG00000011280	ddx56	99	64.222	Scophthalmus_maximus
MGP_PahariEiJ_G0016822	Ddx56	98	67.339	ENSSDUG00000023597	ddx56	98	63.604	Seriola_dumerili
MGP_PahariEiJ_G0016822	Ddx56	98	67.339	ENSSLDG00000018369	ddx56	98	63.604	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0016822	Ddx56	75	86.246	ENSSARG00000014363	DDX56	79	85.042	Sorex_araneus
MGP_PahariEiJ_G0016822	Ddx56	99	66.362	ENSSPUG00000000784	DDX56	96	66.362	Sphenodon_punctatus
MGP_PahariEiJ_G0016822	Ddx56	98	66.129	ENSSPAG00000009392	ddx56	95	66.925	Stegastes_partitus
MGP_PahariEiJ_G0016822	Ddx56	100	89.416	ENSSSCG00000016745	DDX56	100	89.416	Sus_scrofa
MGP_PahariEiJ_G0016822	Ddx56	98	66.129	ENSTRUG00000018623	ddx56	99	62.983	Takifugu_rubripes
MGP_PahariEiJ_G0016822	Ddx56	98	66.532	ENSTNIG00000013593	ddx56	98	62.254	Tetraodon_nigroviridis
MGP_PahariEiJ_G0016822	Ddx56	100	87.729	ENSTBEG00000007119	DDX56	100	87.729	Tupaia_belangeri
MGP_PahariEiJ_G0016822	Ddx56	86	88.136	ENSTTRG00000010552	DDX56	100	88.136	Tursiops_truncatus
MGP_PahariEiJ_G0016822	Ddx56	100	87.912	ENSUAMG00000014194	DDX56	100	87.912	Ursus_americanus
MGP_PahariEiJ_G0016822	Ddx56	100	87.912	ENSUMAG00000009666	DDX56	100	87.912	Ursus_maritimus
MGP_PahariEiJ_G0016822	Ddx56	100	85.897	ENSVVUG00000011905	DDX56	100	85.897	Vulpes_vulpes
MGP_PahariEiJ_G0016822	Ddx56	98	64.919	ENSXETG00000019000	ddx56	99	65.823	Xenopus_tropicalis
MGP_PahariEiJ_G0016822	Ddx56	98	67.339	ENSXCOG00000017413	ddx56	97	63.277	Xiphophorus_couchianus
MGP_PahariEiJ_G0016822	Ddx56	98	67.339	ENSXMAG00000018749	ddx56	97	63.303	Xiphophorus_maculatus