EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0016862 (Gene tree)
Gene ID: 110330515
Gene Symbol: Sf3a1
Alias: 1200014H24Rik|5930416L09Rik
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Minus strand
Length: 22057 bases
Position: chr13:25120002-25142058
Accession: 110330515
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0030535	PRP21_like_P	PF12230.8	3.1e-51	1	1
MGP_PahariEiJ_P0030535	Surp	PF01805.20	1.2e-45	1	2
MGP_PahariEiJ_P0030535	Surp	PF01805.20	1.2e-45	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0030536	-	798	-	-	- (aa)	-	-
MGP_PahariEiJ_T0030537	-	422	-	-	- (aa)	-	-
MGP_PahariEiJ_T0030535	-	4901	-	MGP_PahariEiJ_P0030535	791 (aa)	XP_021066318	UPI000A30D184
MGP_PahariEiJ_T0030538	-	1655	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0016862's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0016862's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0016862	Sf3a1	100	97.856	ENSG00000099995	SF3A1	100	97.856	Homo_sapiens
MGP_PahariEiJ_G0016862	Sf3a1	99	83.439	ENSAPOG00000020465	sf3a1	99	84.704	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0016862	Sf3a1	100	97.358	ENSAMEG00000007737	SF3A1	100	97.358	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0016862	Sf3a1	99	84.586	ENSACIG00000020672	sf3a1	98	85.677	Amphilophus_citrinellus
MGP_PahariEiJ_G0016862	Sf3a1	99	83.038	ENSAOCG00000003060	sf3a1	99	84.447	Amphiprion_ocellaris
MGP_PahariEiJ_G0016862	Sf3a1	99	83.165	ENSAPEG00000010735	sf3a1	99	83.548	Amphiprion_percula
MGP_PahariEiJ_G0016862	Sf3a1	97	84.088	ENSATEG00000021201	sf3a1	97	85.566	Anabas_testudineus
MGP_PahariEiJ_G0016862	Sf3a1	95	93.395	ENSAPLG00000009057	SF3A1	99	92.238	Anas_platyrhynchos
MGP_PahariEiJ_G0016862	Sf3a1	100	85.714	ENSACAG00000009415	SF3A1	100	86.453	Anolis_carolinensis
MGP_PahariEiJ_G0016862	Sf3a1	100	97.982	ENSANAG00000032045	SF3A1	100	97.982	Aotus_nancymaae
MGP_PahariEiJ_G0016862	Sf3a1	99	84.284	ENSACLG00000012622	sf3a1	99	84.685	Astatotilapia_calliptera
MGP_PahariEiJ_G0016862	Sf3a1	99	82.003	ENSAMXG00000005382	sf3a1	98	84.347	Astyanax_mexicanus
MGP_PahariEiJ_G0016862	Sf3a1	100	98.108	ENSBTAG00000003390	SF3A1	100	98.108	Bos_taurus
MGP_PahariEiJ_G0016862	Sf3a1	84	43.243	WBGene00004188	prp-21	90	45.038	Caenorhabditis_elegans
MGP_PahariEiJ_G0016862	Sf3a1	100	97.982	ENSCJAG00000010370	SF3A1	100	97.982	Callithrix_jacchus
MGP_PahariEiJ_G0016862	Sf3a1	100	97.856	ENSCAFG00000012559	SF3A1	100	97.856	Canis_familiaris
MGP_PahariEiJ_G0016862	Sf3a1	100	97.856	ENSCAFG00020000838	SF3A1	100	97.856	Canis_lupus_dingo
MGP_PahariEiJ_G0016862	Sf3a1	100	97.982	ENSCHIG00000018642	SF3A1	100	97.982	Capra_hircus
MGP_PahariEiJ_G0016862	Sf3a1	100	98.235	ENSTSYG00000004739	SF3A1	100	98.235	Carlito_syrichta
MGP_PahariEiJ_G0016862	Sf3a1	94	80.641	ENSCAPG00000015414	SF3A1	98	80.641	Cavia_aperea
MGP_PahariEiJ_G0016862	Sf3a1	100	97.982	ENSCPOG00000014589	SF3A1	100	97.982	Cavia_porcellus
MGP_PahariEiJ_G0016862	Sf3a1	100	97.982	ENSCCAG00000032006	SF3A1	100	97.982	Cebus_capucinus
MGP_PahariEiJ_G0016862	Sf3a1	100	98.235	ENSCATG00000029241	SF3A1	100	98.235	Cercocebus_atys
MGP_PahariEiJ_G0016862	Sf3a1	100	97.604	ENSCLAG00000006508	SF3A1	100	97.604	Chinchilla_lanigera
MGP_PahariEiJ_G0016862	Sf3a1	100	98.108	ENSCSAG00000009470	SF3A1	100	98.108	Chlorocebus_sabaeus
MGP_PahariEiJ_G0016862	Sf3a1	61	98.165	ENSCHOG00000005201	SF3A1	69	98.165	Choloepus_hoffmanni
MGP_PahariEiJ_G0016862	Sf3a1	100	90.428	ENSCPBG00000007595	SF3A1	100	90.554	Chrysemys_picta_bellii
MGP_PahariEiJ_G0016862	Sf3a1	94	52.356	ENSCING00000008526	-	66	58.238	Ciona_intestinalis
MGP_PahariEiJ_G0016862	Sf3a1	96	51.229	ENSCSAVG00000005608	-	90	65.179	Ciona_savignyi
MGP_PahariEiJ_G0016862	Sf3a1	100	98.108	ENSCANG00000033564	SF3A1	100	98.108	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0016862	Sf3a1	100	98.739	ENSCGRG00001008933	Sf3a1	100	98.739	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0016862	Sf3a1	100	98.739	ENSCGRG00000006127	Sf3a1	100	98.739	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0016862	Sf3a1	99	81.957	ENSCSEG00000010792	sf3a1	98	82.987	Cynoglossus_semilaevis
MGP_PahariEiJ_G0016862	Sf3a1	99	82.576	ENSCVAG00000004560	sf3a1	98	83.247	Cyprinodon_variegatus
MGP_PahariEiJ_G0016862	Sf3a1	96	83.703	ENSDARG00000041887	sf3a1	97	84.094	Danio_rerio
MGP_PahariEiJ_G0016862	Sf3a1	100	97.610	ENSDNOG00000010629	SF3A1	100	97.610	Dasypus_novemcinctus
MGP_PahariEiJ_G0016862	Sf3a1	100	97.982	ENSDORG00000005613	Sf3a1	100	97.982	Dipodomys_ordii
MGP_PahariEiJ_G0016862	Sf3a1	79	61.495	FBgn0266917	Sf3a1	84	59.567	Drosophila_melanogaster
MGP_PahariEiJ_G0016862	Sf3a1	88	95.014	ENSETEG00000017194	SF3A1	100	95.014	Echinops_telfairi
MGP_PahariEiJ_G0016862	Sf3a1	97	67.237	ENSEBUG00000001285	sf3a1	77	67.341	Eptatretus_burgeri
MGP_PahariEiJ_G0016862	Sf3a1	100	98.235	ENSEASG00005010254	SF3A1	100	98.235	Equus_asinus_asinus
MGP_PahariEiJ_G0016862	Sf3a1	100	98.235	ENSECAG00000023962	SF3A1	100	98.235	Equus_caballus
MGP_PahariEiJ_G0016862	Sf3a1	73	93.443	ENSEEUG00000003159	SF3A1	83	93.443	Erinaceus_europaeus
MGP_PahariEiJ_G0016862	Sf3a1	99	82.138	ENSELUG00000022578	sf3a1	97	83.748	Esox_lucius
MGP_PahariEiJ_G0016862	Sf3a1	100	97.856	ENSFCAG00000011932	SF3A1	100	97.856	Felis_catus
MGP_PahariEiJ_G0016862	Sf3a1	95	92.328	ENSFALG00000006944	SF3A1	98	91.645	Ficedula_albicollis
MGP_PahariEiJ_G0016862	Sf3a1	100	98.108	ENSFDAG00000009560	SF3A1	100	98.108	Fukomys_damarensis
MGP_PahariEiJ_G0016862	Sf3a1	99	84.091	ENSFHEG00000010866	sf3a1	98	84.326	Fundulus_heteroclitus
MGP_PahariEiJ_G0016862	Sf3a1	99	80.657	ENSGMOG00000016024	sf3a1	97	81.201	Gadus_morhua
MGP_PahariEiJ_G0016862	Sf3a1	95	93.386	ENSGALG00000007937	SF3A1	98	92.288	Gallus_gallus
MGP_PahariEiJ_G0016862	Sf3a1	99	83.207	ENSGAFG00000009111	sf3a1	97	84.474	Gambusia_affinis
MGP_PahariEiJ_G0016862	Sf3a1	99	82.427	ENSGACG00000011893	sf3a1	97	83.225	Gasterosteus_aculeatus
MGP_PahariEiJ_G0016862	Sf3a1	96	90.407	ENSGAGG00000000762	SF3A1	99	90.539	Gopherus_agassizii
MGP_PahariEiJ_G0016862	Sf3a1	100	97.856	ENSGGOG00000012631	SF3A1	100	97.856	Gorilla_gorilla
MGP_PahariEiJ_G0016862	Sf3a1	99	84.284	ENSHBUG00000015795	sf3a1	99	84.685	Haplochromis_burtoni
MGP_PahariEiJ_G0016862	Sf3a1	100	98.235	ENSHGLG00000007907	SF3A1	100	98.235	Heterocephalus_glaber_female
MGP_PahariEiJ_G0016862	Sf3a1	100	98.235	ENSHGLG00100013799	SF3A1	100	98.235	Heterocephalus_glaber_male
MGP_PahariEiJ_G0016862	Sf3a1	99	79.798	ENSHCOG00000015423	sf3a1	99	80.645	Hippocampus_comes
MGP_PahariEiJ_G0016862	Sf3a1	96	81.901	ENSIPUG00000002470	sf3a1	98	82.292	Ictalurus_punctatus
MGP_PahariEiJ_G0016862	Sf3a1	100	98.235	ENSSTOG00000013892	SF3A1	100	98.235	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0016862	Sf3a1	100	98.111	ENSJJAG00000022566	Sf3a1	100	98.111	Jaculus_jaculus
MGP_PahariEiJ_G0016862	Sf3a1	99	83.081	ENSKMAG00000002400	sf3a1	98	84.715	Kryptolebias_marmoratus
MGP_PahariEiJ_G0016862	Sf3a1	99	82.449	ENSLBEG00000022974	sf3a1	98	83.053	Labrus_bergylta
MGP_PahariEiJ_G0016862	Sf3a1	100	86.826	ENSLACG00000003565	SF3A1	97	88.281	Latimeria_chalumnae
MGP_PahariEiJ_G0016862	Sf3a1	100	84.336	ENSLOCG00000008251	sf3a1	97	85.195	Lepisosteus_oculatus
MGP_PahariEiJ_G0016862	Sf3a1	97	62.242	ENSLAFG00000026032	-	97	61.598	Loxodonta_africana
MGP_PahariEiJ_G0016862	Sf3a1	100	97.856	ENSLAFG00000000448	SF3A1	100	97.856	Loxodonta_africana
MGP_PahariEiJ_G0016862	Sf3a1	100	97.982	ENSMFAG00000031979	SF3A1	100	97.982	Macaca_fascicularis
MGP_PahariEiJ_G0016862	Sf3a1	100	97.982	ENSMMUG00000005547	SF3A1	100	97.982	Macaca_mulatta
MGP_PahariEiJ_G0016862	Sf3a1	100	97.856	ENSMNEG00000037229	SF3A1	100	97.856	Macaca_nemestrina
MGP_PahariEiJ_G0016862	Sf3a1	100	98.108	ENSMLEG00000041908	SF3A1	100	98.108	Mandrillus_leucophaeus
MGP_PahariEiJ_G0016862	Sf3a1	97	85.233	ENSMAMG00000006460	sf3a1	96	85.492	Mastacembelus_armatus
MGP_PahariEiJ_G0016862	Sf3a1	99	84.284	ENSMZEG00005009633	sf3a1	99	84.685	Maylandia_zebra
MGP_PahariEiJ_G0016862	Sf3a1	95	93.386	ENSMGAG00000001330	SF3A1	100	92.358	Meleagris_gallopavo
MGP_PahariEiJ_G0016862	Sf3a1	92	95.355	ENSMAUG00000020317	Sf3a1	94	95.355	Mesocricetus_auratus
MGP_PahariEiJ_G0016862	Sf3a1	100	97.856	ENSMICG00000010038	SF3A1	100	97.856	Microcebus_murinus
MGP_PahariEiJ_G0016862	Sf3a1	100	98.739	ENSMOCG00000008438	Sf3a1	100	98.739	Microtus_ochrogaster
MGP_PahariEiJ_G0016862	Sf3a1	99	82.038	ENSMMOG00000015588	sf3a1	98	82.018	Mola_mola
MGP_PahariEiJ_G0016862	Sf3a1	100	96.721	ENSMODG00000009270	SF3A1	100	96.721	Monodelphis_domestica
MGP_PahariEiJ_G0016862	Sf3a1	99	83.944	ENSMALG00000000148	sf3a1	99	85.695	Monopterus_albus
MGP_PahariEiJ_G0016862	Sf3a1	100	99.747	MGP_CAROLIEiJ_G0016029	Sf3a1	100	99.747	Mus_caroli
MGP_PahariEiJ_G0016862	Sf3a1	100	99.747	ENSMUSG00000002129	Sf3a1	100	99.747	Mus_musculus
MGP_PahariEiJ_G0016862	Sf3a1	100	99.747	MGP_SPRETEiJ_G0016870	Sf3a1	100	99.747	Mus_spretus
MGP_PahariEiJ_G0016862	Sf3a1	100	97.856	ENSMPUG00000013144	SF3A1	100	97.856	Mustela_putorius_furo
MGP_PahariEiJ_G0016862	Sf3a1	100	97.982	ENSMLUG00000002139	SF3A1	100	97.982	Myotis_lucifugus
MGP_PahariEiJ_G0016862	Sf3a1	100	98.235	ENSNGAG00000016977	Sf3a1	100	98.235	Nannospalax_galili
MGP_PahariEiJ_G0016862	Sf3a1	99	84.071	ENSNBRG00000016642	sf3a1	97	85.752	Neolamprologus_brichardi
MGP_PahariEiJ_G0016862	Sf3a1	100	98.108	ENSNLEG00000003686	SF3A1	100	98.108	Nomascus_leucogenys
MGP_PahariEiJ_G0016862	Sf3a1	94	86.962	ENSMEUG00000008741	SF3A1	100	86.842	Notamacropus_eugenii
MGP_PahariEiJ_G0016862	Sf3a1	100	97.478	ENSOPRG00000016636	SF3A1	100	97.478	Ochotona_princeps
MGP_PahariEiJ_G0016862	Sf3a1	100	98.108	ENSODEG00000002571	SF3A1	100	98.108	Octodon_degus
MGP_PahariEiJ_G0016862	Sf3a1	99	84.304	ENSONIG00000010848	sf3a1	99	84.062	Oreochromis_niloticus
MGP_PahariEiJ_G0016862	Sf3a1	100	97.730	ENSOCUG00000007633	SF3A1	100	97.730	Oryctolagus_cuniculus
MGP_PahariEiJ_G0016862	Sf3a1	95	82.181	ENSORLG00000013050	sf3a1	98	83.356	Oryzias_latipes
MGP_PahariEiJ_G0016862	Sf3a1	98	80.641	ENSORLG00020003236	sf3a1	97	81.534	Oryzias_latipes_hni
MGP_PahariEiJ_G0016862	Sf3a1	99	82.197	ENSORLG00015017411	sf3a1	97	84.737	Oryzias_latipes_hsok
MGP_PahariEiJ_G0016862	Sf3a1	99	82.803	ENSOMEG00000013362	sf3a1	99	83.097	Oryzias_melastigma
MGP_PahariEiJ_G0016862	Sf3a1	100	97.730	ENSOGAG00000012931	SF3A1	100	97.730	Otolemur_garnettii
MGP_PahariEiJ_G0016862	Sf3a1	100	96.217	ENSOARG00000006849	SF3A1	100	96.217	Ovis_aries
MGP_PahariEiJ_G0016862	Sf3a1	100	96.847	ENSPPAG00000041790	SF3A1	100	96.847	Pan_paniscus
MGP_PahariEiJ_G0016862	Sf3a1	100	97.856	ENSPPRG00000004391	SF3A1	100	97.856	Panthera_pardus
MGP_PahariEiJ_G0016862	Sf3a1	97	98.057	ENSPTIG00000000844	SF3A1	100	98.057	Panthera_tigris_altaica
MGP_PahariEiJ_G0016862	Sf3a1	100	97.856	ENSPTRG00000014240	SF3A1	100	97.856	Pan_troglodytes
MGP_PahariEiJ_G0016862	Sf3a1	100	98.108	ENSPANG00000020772	SF3A1	100	98.108	Papio_anubis
MGP_PahariEiJ_G0016862	Sf3a1	83	92.308	ENSPSIG00000012803	SF3A1	96	93.573	Pelodiscus_sinensis
MGP_PahariEiJ_G0016862	Sf3a1	96	84.453	ENSPMGG00000023096	sf3a1	99	84.190	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0016862	Sf3a1	100	98.865	ENSPEMG00000009494	Sf3a1	100	98.865	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0016862	Sf3a1	69	77.677	ENSPMAG00000007139	-	90	77.612	Petromyzon_marinus
MGP_PahariEiJ_G0016862	Sf3a1	100	96.469	ENSPCIG00000022692	SF3A1	100	96.469	Phascolarctos_cinereus
MGP_PahariEiJ_G0016862	Sf3a1	92	78.912	ENSPFOG00000016768	sf3a1	93	78.095	Poecilia_formosa
MGP_PahariEiJ_G0016862	Sf3a1	99	82.323	ENSPLAG00000017268	sf3a1	97	84.737	Poecilia_latipinna
MGP_PahariEiJ_G0016862	Sf3a1	96	85.392	ENSPMEG00000019811	sf3a1	98	84.337	Poecilia_mexicana
MGP_PahariEiJ_G0016862	Sf3a1	99	82.449	ENSPREG00000010347	sf3a1	97	85.263	Poecilia_reticulata
MGP_PahariEiJ_G0016862	Sf3a1	100	98.108	ENSPPYG00000011707	SF3A1	100	98.108	Pongo_abelii
MGP_PahariEiJ_G0016862	Sf3a1	57	97.642	ENSPCAG00000003266	SF3A1	57	97.642	Procavia_capensis
MGP_PahariEiJ_G0016862	Sf3a1	100	97.982	ENSPCOG00000026630	SF3A1	100	97.982	Propithecus_coquereli
MGP_PahariEiJ_G0016862	Sf3a1	100	94.578	ENSPVAG00000017719	SF3A1	100	94.578	Pteropus_vampyrus
MGP_PahariEiJ_G0016862	Sf3a1	99	84.284	ENSPNYG00000018706	sf3a1	99	84.685	Pundamilia_nyererei
MGP_PahariEiJ_G0016862	Sf3a1	98	82.697	ENSPNAG00000003721	sf3a1	99	83.184	Pygocentrus_nattereri
MGP_PahariEiJ_G0016862	Sf3a1	100	99.241	ENSRNOG00000005218	Sf3a1	100	99.241	Rattus_norvegicus
MGP_PahariEiJ_G0016862	Sf3a1	100	97.982	ENSRBIG00000032167	SF3A1	100	97.982	Rhinopithecus_bieti
MGP_PahariEiJ_G0016862	Sf3a1	100	97.982	ENSRROG00000044908	SF3A1	100	97.982	Rhinopithecus_roxellana
MGP_PahariEiJ_G0016862	Sf3a1	97	93.928	ENSSBOG00000021960	SF3A1	100	98.227	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0016862	Sf3a1	99	92.803	ENSSHAG00000003666	SF3A1	98	93.806	Sarcophilus_harrisii
MGP_PahariEiJ_G0016862	Sf3a1	99	83.291	ENSSFOG00015004579	sf3a1	99	84.487	Scleropages_formosus
MGP_PahariEiJ_G0016862	Sf3a1	99	81.156	ENSSMAG00000004275	sf3a1	98	82.857	Scophthalmus_maximus
MGP_PahariEiJ_G0016862	Sf3a1	99	84.177	ENSSDUG00000022219	sf3a1	99	84.319	Seriola_dumerili
MGP_PahariEiJ_G0016862	Sf3a1	99	84.177	ENSSLDG00000012642	sf3a1	99	84.319	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0016862	Sf3a1	97	94.689	ENSSARG00000005960	SF3A1	100	94.689	Sorex_araneus
MGP_PahariEiJ_G0016862	Sf3a1	96	91.829	ENSSPUG00000018863	SF3A1	100	91.169	Sphenodon_punctatus
MGP_PahariEiJ_G0016862	Sf3a1	99	84.331	ENSSPAG00000011856	sf3a1	99	84.447	Stegastes_partitus
MGP_PahariEiJ_G0016862	Sf3a1	100	98.108	ENSSSCG00000010002	SF3A1	100	98.108	Sus_scrofa
MGP_PahariEiJ_G0016862	Sf3a1	95	93.272	ENSTGUG00000010547	SF3A1	99	92.737	Taeniopygia_guttata
MGP_PahariEiJ_G0016862	Sf3a1	99	79.774	ENSTRUG00000006118	sf3a1	97	82.500	Takifugu_rubripes
MGP_PahariEiJ_G0016862	Sf3a1	64	81.041	ENSTNIG00000005713	sf3a1	81	84.821	Tetraodon_nigroviridis
MGP_PahariEiJ_G0016862	Sf3a1	98	90.605	ENSTBEG00000012771	SF3A1	100	90.668	Tupaia_belangeri
MGP_PahariEiJ_G0016862	Sf3a1	100	97.733	ENSTTRG00000001535	SF3A1	100	97.733	Tursiops_truncatus
MGP_PahariEiJ_G0016862	Sf3a1	99	96.950	ENSUAMG00000006750	SF3A1	99	96.950	Ursus_americanus
MGP_PahariEiJ_G0016862	Sf3a1	99	96.819	ENSUMAG00000016665	SF3A1	98	98.060	Ursus_maritimus
MGP_PahariEiJ_G0016862	Sf3a1	100	97.856	ENSVVUG00000003075	SF3A1	100	97.856	Vulpes_vulpes
MGP_PahariEiJ_G0016862	Sf3a1	100	85.445	ENSXETG00000016144	sf3a1	100	85.194	Xenopus_tropicalis
MGP_PahariEiJ_G0016862	Sf3a1	99	82.955	ENSXCOG00000015653	sf3a1	97	84.605	Xiphophorus_couchianus
MGP_PahariEiJ_G0016862	Sf3a1	99	83.081	ENSXMAG00000002753	sf3a1	97	84.737	Xiphophorus_maculatus