EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0017268 (Gene tree)
Gene ID: 110330792
Gene Symbol: Hfm1
Alias: A330009G12Rik|LOC381663|Mer3|Sec63d1
Full Name: HFM1%2C ATP dependent DNA helicase homolog
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Minus strand
Length: 80061 bases
Position: chr13:94715692-94795752
Accession: 110330792
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0032638	ResIII	PF04851.15	7.5e-11	1	1
MGP_PahariEiJ_P0032639	ResIII	PF04851.15	7.5e-11	1	1
MGP_PahariEiJ_P0032643	ResIII	PF04851.15	6.8e-08	1	1
MGP_PahariEiJ_P0032638	DEAD	PF00270.29	7.2e-25	1	1
MGP_PahariEiJ_P0032639	DEAD	PF00270.29	7.2e-25	1	1
MGP_PahariEiJ_P0032643	DEAD	PF00270.29	1.5e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0032637	-	2613	-	MGP_PahariEiJ_P0032637	49 (aa)	-	-
MGP_PahariEiJ_T0032639	-	5042	-	MGP_PahariEiJ_P0032639	1434 (aa)	XP_021066772	UPI000A30C60A
MGP_PahariEiJ_T0032638	-	4871	-	MGP_PahariEiJ_P0032638	1434 (aa)	XP_021066772	UPI000A30C60A
MGP_PahariEiJ_T0032642	-	1349	-	MGP_PahariEiJ_P0032642	23 (aa)	-	-
MGP_PahariEiJ_T0032643	-	1383	-	MGP_PahariEiJ_P0032643	410 (aa)	-	-
MGP_PahariEiJ_T0032640	-	4451	-	MGP_PahariEiJ_P0032640	1448 (aa)	-	-
MGP_PahariEiJ_T0032641	-	1928	-	MGP_PahariEiJ_P0032641	625 (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0017268's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0017268's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PahariEiJ_G0017268	Hfm1	59	32.692	MGP_PahariEiJ_G0025695	Snrnp200	75	32.572

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0017268	Hfm1	100	76.982	ENSG00000162669	HFM1	100	76.982	Homo_sapiens
MGP_PahariEiJ_G0017268	Hfm1	58	64.671	ENSAPOG00000005304	hfm1	94	64.671	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0017268	Hfm1	100	76.164	ENSAMEG00000000432	HFM1	100	76.164	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0017268	Hfm1	75	55.586	ENSACIG00000021553	hfm1	95	56.497	Amphilophus_citrinellus
MGP_PahariEiJ_G0017268	Hfm1	58	64.826	ENSAOCG00000022839	hfm1	96	67.298	Amphiprion_ocellaris
MGP_PahariEiJ_G0017268	Hfm1	58	64.706	ENSAPEG00000014316	hfm1	96	67.595	Amphiprion_percula
MGP_PahariEiJ_G0017268	Hfm1	73	58.249	ENSATEG00000019181	hfm1	91	57.461	Anabas_testudineus
MGP_PahariEiJ_G0017268	Hfm1	100	58.036	ENSAPLG00000013639	HFM1	100	57.869	Anas_platyrhynchos
MGP_PahariEiJ_G0017268	Hfm1	100	74.653	ENSANAG00000029513	HFM1	100	74.653	Aotus_nancymaae
MGP_PahariEiJ_G0017268	Hfm1	70	58.481	ENSACLG00000009033	hfm1	97	63.604	Astatotilapia_calliptera
MGP_PahariEiJ_G0017268	Hfm1	85	54.134	ENSAMXG00000006108	hfm1	77	58.206	Astyanax_mexicanus
MGP_PahariEiJ_G0017268	Hfm1	100	74.931	ENSBTAG00000020856	HFM1	100	74.931	Bos_taurus
MGP_PahariEiJ_G0017268	Hfm1	100	75.243	ENSCJAG00000001843	HFM1	100	75.243	Callithrix_jacchus
MGP_PahariEiJ_G0017268	Hfm1	100	75.261	ENSCAFG00000020187	HFM1	100	75.261	Canis_familiaris
MGP_PahariEiJ_G0017268	Hfm1	100	69.324	ENSCAFG00020013595	-	100	70.149	Canis_lupus_dingo
MGP_PahariEiJ_G0017268	Hfm1	99	62.103	ENSCHIG00000018623	-	95	64.130	Capra_hircus
MGP_PahariEiJ_G0017268	Hfm1	100	75.972	ENSTSYG00000014250	HFM1	100	75.972	Carlito_syrichta
MGP_PahariEiJ_G0017268	Hfm1	99	73.240	ENSCPOG00000007421	HFM1	99	73.240	Cavia_porcellus
MGP_PahariEiJ_G0017268	Hfm1	100	75.382	ENSCCAG00000033206	HFM1	100	75.382	Cebus_capucinus
MGP_PahariEiJ_G0017268	Hfm1	100	76.495	ENSCATG00000030987	HFM1	100	76.495	Cercocebus_atys
MGP_PahariEiJ_G0017268	Hfm1	100	74.189	ENSCLAG00000005173	HFM1	99	74.189	Chinchilla_lanigera
MGP_PahariEiJ_G0017268	Hfm1	68	88.158	ENSCHOG00000011824	-	77	88.158	Choloepus_hoffmanni
MGP_PahariEiJ_G0017268	Hfm1	100	73.123	ENSCANG00000034052	-	99	73.348	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0017268	Hfm1	100	80.332	ENSCGRG00001016995	Hfm1	100	80.263	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0017268	Hfm1	100	84.889	ENSCGRG00000017181	Hfm1	100	84.819	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0017268	Hfm1	71	57.512	ENSCSEG00000017659	hfm1	94	57.608	Cynoglossus_semilaevis
MGP_PahariEiJ_G0017268	Hfm1	50	67.416	ENSCVAG00000005075	hfm1	86	67.416	Cyprinodon_variegatus
MGP_PahariEiJ_G0017268	Hfm1	100	36.085	ENSDARG00000104288	hfm1	96	55.074	Danio_rerio
MGP_PahariEiJ_G0017268	Hfm1	100	72.102	ENSDNOG00000004776	HFM1	100	72.102	Dasypus_novemcinctus
MGP_PahariEiJ_G0017268	Hfm1	100	73.246	ENSDORG00000014661	Hfm1	100	73.177	Dipodomys_ordii
MGP_PahariEiJ_G0017268	Hfm1	100	70.048	ENSEASG00005015424	HFM1	98	80.117	Equus_asinus_asinus
MGP_PahariEiJ_G0017268	Hfm1	100	75.421	ENSECAG00000024039	HFM1	100	75.421	Equus_caballus
MGP_PahariEiJ_G0017268	Hfm1	63	65.165	ENSELUG00000018944	hfm1	97	65.165	Esox_lucius
MGP_PahariEiJ_G0017268	Hfm1	100	76.319	ENSFCAG00000029116	HFM1	100	76.319	Felis_catus
MGP_PahariEiJ_G0017268	Hfm1	100	57.441	ENSFALG00000001781	HFM1	100	57.684	Ficedula_albicollis
MGP_PahariEiJ_G0017268	Hfm1	100	73.705	ENSFDAG00000020816	HFM1	100	73.705	Fukomys_damarensis
MGP_PahariEiJ_G0017268	Hfm1	66	60.084	ENSGMOG00000017436	hfm1	99	60.084	Gadus_morhua
MGP_PahariEiJ_G0017268	Hfm1	73	58.640	ENSGAFG00000018093	hfm1	94	64.755	Gambusia_affinis
MGP_PahariEiJ_G0017268	Hfm1	66	60.436	ENSGACG00000015686	hfm1	100	60.436	Gasterosteus_aculeatus
MGP_PahariEiJ_G0017268	Hfm1	100	76.773	ENSGGOG00000038524	HFM1	100	76.773	Gorilla_gorilla
MGP_PahariEiJ_G0017268	Hfm1	70	59.566	ENSHBUG00000007309	hfm1	97	58.318	Haplochromis_burtoni
MGP_PahariEiJ_G0017268	Hfm1	100	71.533	ENSHGLG00000007780	-	100	72.805	Heterocephalus_glaber_female
MGP_PahariEiJ_G0017268	Hfm1	100	69.952	ENSHGLG00100019217	-	100	71.398	Heterocephalus_glaber_male
MGP_PahariEiJ_G0017268	Hfm1	57	62.577	ENSHCOG00000019632	hfm1	97	62.577	Hippocampus_comes
MGP_PahariEiJ_G0017268	Hfm1	66	64.051	ENSIPUG00000017020	hfm1	92	64.887	Ictalurus_punctatus
MGP_PahariEiJ_G0017268	Hfm1	100	71.776	ENSSTOG00000008477	-	100	72.163	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0017268	Hfm1	100	74.373	ENSJJAG00000017198	Hfm1	100	77.998	Jaculus_jaculus
MGP_PahariEiJ_G0017268	Hfm1	62	61.240	ENSKMAG00000002282	hfm1	91	61.240	Kryptolebias_marmoratus
MGP_PahariEiJ_G0017268	Hfm1	71	57.704	ENSLBEG00000006759	hfm1	96	63.842	Labrus_bergylta
MGP_PahariEiJ_G0017268	Hfm1	68	66.431	ENSLACG00000010698	HFM1	100	63.782	Latimeria_chalumnae
MGP_PahariEiJ_G0017268	Hfm1	74	60.770	ENSLOCG00000004931	hfm1	96	62.252	Lepisosteus_oculatus
MGP_PahariEiJ_G0017268	Hfm1	52	84.118	ENSLAFG00000015903	-	99	84.118	Loxodonta_africana
MGP_PahariEiJ_G0017268	Hfm1	100	74.151	ENSMFAG00000003649	HFM1	100	74.151	Macaca_fascicularis
MGP_PahariEiJ_G0017268	Hfm1	100	76.565	ENSMMUG00000006819	HFM1	100	76.565	Macaca_mulatta
MGP_PahariEiJ_G0017268	Hfm1	100	72.881	ENSMNEG00000039833	-	99	73.134	Macaca_nemestrina
MGP_PahariEiJ_G0017268	Hfm1	100	73.123	ENSMLEG00000027571	-	99	73.348	Mandrillus_leucophaeus
MGP_PahariEiJ_G0017268	Hfm1	54	69.023	ENSMAMG00000004623	hfm1	97	65.054	Mastacembelus_armatus
MGP_PahariEiJ_G0017268	Hfm1	70	58.481	ENSMZEG00005004679	hfm1	97	63.604	Maylandia_zebra
MGP_PahariEiJ_G0017268	Hfm1	100	48.478	ENSMGAG00000008437	HFM1	96	77.261	Meleagris_gallopavo
MGP_PahariEiJ_G0017268	Hfm1	100	84.134	ENSMAUG00000018858	Hfm1	100	84.134	Mesocricetus_auratus
MGP_PahariEiJ_G0017268	Hfm1	100	76.095	ENSMICG00000037935	HFM1	100	76.095	Microcebus_murinus
MGP_PahariEiJ_G0017268	Hfm1	100	82.021	ENSMOCG00000014812	Hfm1	100	81.882	Microtus_ochrogaster
MGP_PahariEiJ_G0017268	Hfm1	62	62.290	ENSMMOG00000006148	hfm1	96	63.298	Mola_mola
MGP_PahariEiJ_G0017268	Hfm1	70	59.028	ENSMALG00000002401	hfm1	96	63.827	Monopterus_albus
MGP_PahariEiJ_G0017268	Hfm1	96	92.208	MGP_CAROLIEiJ_G0027496	Hfm1	100	91.948	Mus_caroli
MGP_PahariEiJ_G0017268	Hfm1	100	94.770	ENSMUSG00000043410	Hfm1	100	94.770	Mus_musculus
MGP_PahariEiJ_G0017268	Hfm1	100	94.212	MGP_SPRETEiJ_G0028495	Hfm1	100	94.212	Mus_spretus
MGP_PahariEiJ_G0017268	Hfm1	100	73.872	ENSMPUG00000004594	HFM1	100	73.872	Mustela_putorius_furo
MGP_PahariEiJ_G0017268	Hfm1	100	73.786	ENSMLUG00000010200	HFM1	100	73.786	Myotis_lucifugus
MGP_PahariEiJ_G0017268	Hfm1	72	54.685	ENSNBRG00000002910	hfm1	97	63.714	Neolamprologus_brichardi
MGP_PahariEiJ_G0017268	Hfm1	100	73.608	ENSNLEG00000010285	HFM1	100	73.597	Nomascus_leucogenys
MGP_PahariEiJ_G0017268	Hfm1	100	50.363	ENSMEUG00000015788	HFM1	84	65.130	Notamacropus_eugenii
MGP_PahariEiJ_G0017268	Hfm1	84	74.228	ENSOPRG00000013916	HFM1	84	73.105	Ochotona_princeps
MGP_PahariEiJ_G0017268	Hfm1	100	70.560	ENSODEG00000006243	-	100	71.520	Octodon_degus
MGP_PahariEiJ_G0017268	Hfm1	71	60.213	ENSONIG00000010590	hfm1	99	60.096	Oreochromis_niloticus
MGP_PahariEiJ_G0017268	Hfm1	94	64.691	ENSOCUG00000010974	-	95	64.691	Oryctolagus_cuniculus
MGP_PahariEiJ_G0017268	Hfm1	57	63.793	ENSORLG00000026844	hfm1	99	63.793	Oryzias_latipes
MGP_PahariEiJ_G0017268	Hfm1	68	55.081	ENSORLG00020002951	hfm1	96	47.755	Oryzias_latipes_hni
MGP_PahariEiJ_G0017268	Hfm1	74	57.470	ENSOMEG00000016474	hfm1	75	57.948	Oryzias_melastigma
MGP_PahariEiJ_G0017268	Hfm1	100	71.913	ENSOGAG00000032369	HFM1	100	78.600	Otolemur_garnettii
MGP_PahariEiJ_G0017268	Hfm1	100	75.156	ENSOARG00000015812	HFM1	100	75.156	Ovis_aries
MGP_PahariEiJ_G0017268	Hfm1	100	74.334	ENSPPAG00000024582	HFM1	100	78.824	Pan_paniscus
MGP_PahariEiJ_G0017268	Hfm1	100	76.528	ENSPPRG00000003270	HFM1	100	76.528	Panthera_pardus
MGP_PahariEiJ_G0017268	Hfm1	100	76.319	ENSPTIG00000018881	HFM1	100	76.319	Panthera_tigris_altaica
MGP_PahariEiJ_G0017268	Hfm1	100	76.982	ENSPTRG00000000948	HFM1	100	76.982	Pan_troglodytes
MGP_PahariEiJ_G0017268	Hfm1	100	76.565	ENSPANG00000009838	HFM1	100	76.565	Papio_anubis
MGP_PahariEiJ_G0017268	Hfm1	62	65.467	ENSPKIG00000003810	hfm1	95	66.223	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0017268	Hfm1	58	64.891	ENSPMGG00000011059	hfm1	100	64.891	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0017268	Hfm1	100	86.481	ENSPEMG00000022852	Hfm1	100	86.481	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0017268	Hfm1	100	64.797	ENSPCIG00000014233	HFM1	100	64.797	Phascolarctos_cinereus
MGP_PahariEiJ_G0017268	Hfm1	73	60.150	ENSPFOG00000017194	hfm1	99	60.878	Poecilia_formosa
MGP_PahariEiJ_G0017268	Hfm1	71	61.613	ENSPLAG00000000571	hfm1	92	61.613	Poecilia_latipinna
MGP_PahariEiJ_G0017268	Hfm1	71	61.516	ENSPMEG00000019475	hfm1	92	61.516	Poecilia_mexicana
MGP_PahariEiJ_G0017268	Hfm1	71	60.728	ENSPREG00000007803	hfm1	94	63.995	Poecilia_reticulata
MGP_PahariEiJ_G0017268	Hfm1	100	76.426	ENSPPYG00000001163	HFM1	100	76.426	Pongo_abelii
MGP_PahariEiJ_G0017268	Hfm1	68	79.902	ENSPCAG00000004289	-	68	79.902	Procavia_capensis
MGP_PahariEiJ_G0017268	Hfm1	99	58.191	ENSPCOG00000026252	-	100	59.275	Propithecus_coquereli
MGP_PahariEiJ_G0017268	Hfm1	100	68.333	ENSPVAG00000009713	HFM1	100	68.333	Pteropus_vampyrus
MGP_PahariEiJ_G0017268	Hfm1	70	58.481	ENSPNYG00000001795	hfm1	97	63.604	Pundamilia_nyererei
MGP_PahariEiJ_G0017268	Hfm1	59	66.430	ENSPNAG00000010865	hfm1	85	65.771	Pygocentrus_nattereri
MGP_PahariEiJ_G0017268	Hfm1	100	88.006	ENSRNOG00000023299	Hfm1	100	88.006	Rattus_norvegicus
MGP_PahariEiJ_G0017268	Hfm1	100	72.639	ENSRBIG00000033899	-	99	72.708	Rhinopithecus_bieti
MGP_PahariEiJ_G0017268	Hfm1	100	76.356	ENSRROG00000045569	HFM1	100	76.356	Rhinopithecus_roxellana
MGP_PahariEiJ_G0017268	Hfm1	100	73.783	ENSSBOG00000027456	HFM1	100	73.783	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0017268	Hfm1	99	53.957	ENSSHAG00000014616	-	98	67.667	Sarcophilus_harrisii
MGP_PahariEiJ_G0017268	Hfm1	100	41.646	ENSSFOG00015020129	hfm1	100	49.060	Scleropages_formosus
MGP_PahariEiJ_G0017268	Hfm1	62	64.022	ENSSMAG00000006907	hfm1	87	64.022	Scophthalmus_maximus
MGP_PahariEiJ_G0017268	Hfm1	60	64.019	ENSSDUG00000011424	hfm1	96	64.019	Seriola_dumerili
MGP_PahariEiJ_G0017268	Hfm1	58	65.862	ENSSLDG00000016386	hfm1	92	65.862	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0017268	Hfm1	94	57.692	ENSSARG00000009598	-	99	57.692	Sorex_araneus
MGP_PahariEiJ_G0017268	Hfm1	50	90.071	ENSSPUG00000003380	-	52	85.279	Sphenodon_punctatus
MGP_PahariEiJ_G0017268	Hfm1	69	57.114	ENSSPAG00000001023	hfm1	94	65.066	Stegastes_partitus
MGP_PahariEiJ_G0017268	Hfm1	100	73.077	ENSSSCG00000006912	HFM1	99	75.019	Sus_scrofa
MGP_PahariEiJ_G0017268	Hfm1	66	73.877	ENSTGUG00000006172	HFM1	100	73.877	Taeniopygia_guttata
MGP_PahariEiJ_G0017268	Hfm1	94	67.268	ENSTBEG00000017533	-	99	67.268	Tupaia_belangeri
MGP_PahariEiJ_G0017268	Hfm1	100	72.949	ENSTTRG00000013933	HFM1	100	72.949	Tursiops_truncatus
MGP_PahariEiJ_G0017268	Hfm1	100	59.518	ENSUAMG00000008754	-	99	63.905	Ursus_americanus
MGP_PahariEiJ_G0017268	Hfm1	100	69.324	ENSUMAG00000001345	-	100	70.213	Ursus_maritimus
MGP_PahariEiJ_G0017268	Hfm1	93	76.157	ENSVPAG00000011331	HFM1	93	76.157	Vicugna_pacos
MGP_PahariEiJ_G0017268	Hfm1	100	68.599	ENSVVUG00000020760	HFM1	99	77.703	Vulpes_vulpes
MGP_PahariEiJ_G0017268	Hfm1	59	64.623	ENSXMAG00000004178	hfm1	94	64.623	Xiphophorus_maculatus