EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0017695 (Gene tree)
Gene ID: 110331973
Gene Symbol: Chd3
Alias: 2600010P09Rik|Chd7|Mi-2 alpha|Prp7|Prp9-1
Full Name: chromodomain helicase DNA binding protein 3
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Minus strand
Length: 26771 bases
Position: chr14:37185004-37211774
Accession: 110331973
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0034278	ResIII	PF04851.15	3.3e-08	1	1
MGP_PahariEiJ_P0034277	ResIII	PF04851.15	3.6e-08	1	1
MGP_PahariEiJ_P0034276	ResIII	PF04851.15	3.8e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0034279	-	718	-	-	- (aa)	-	-
MGP_PahariEiJ_T0034278	-	5654	-	MGP_PahariEiJ_P0034278	1884 (aa)	-	-
MGP_PahariEiJ_T0034282	-	453	-	MGP_PahariEiJ_P0034282	151 (aa)	-	-
MGP_PahariEiJ_T0034283	-	430	-	MGP_PahariEiJ_P0034283	143 (aa)	-	-
MGP_PahariEiJ_T0034275	-	2163	-	-	- (aa)	-	-
MGP_PahariEiJ_T0034274	-	1901	-	-	- (aa)	-	-
MGP_PahariEiJ_T0034277	-	6054	-	MGP_PahariEiJ_P0034277	2017 (aa)	-	-
MGP_PahariEiJ_T0034276	-	7245	XM_021212862	MGP_PahariEiJ_P0034276	2051 (aa)	XP_021068521	-
MGP_PahariEiJ_T0034280	-	419	-	-	- (aa)	-	-
MGP_PahariEiJ_T0034281	-	591	-	MGP_PahariEiJ_P0034281	196 (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0017695's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0017695's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PahariEiJ_G0017695	Chd3	98	70.178	MGP_PahariEiJ_G0029205	Chd5	97	70.349

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0017695	Chd3	100	97.772	ENSG00000170004	CHD3	99	97.132	Homo_sapiens
MGP_PahariEiJ_G0017695	Chd3	88	76.358	ENSAPOG00000005614	chd3	94	79.885	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0017695	Chd3	67	96.266	ENSAMEG00000003025	-	100	96.266	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0017695	Chd3	84	87.283	ENSACIG00000019671	chd3	99	87.283	Amphilophus_citrinellus
MGP_PahariEiJ_G0017695	Chd3	95	80.546	ENSAOCG00000023784	chd3	97	81.317	Amphiprion_ocellaris
MGP_PahariEiJ_G0017695	Chd3	95	79.863	ENSAPEG00000006341	chd3	95	76.952	Amphiprion_percula
MGP_PahariEiJ_G0017695	Chd3	94	80.969	ENSATEG00000000848	chd3	99	74.299	Anabas_testudineus
MGP_PahariEiJ_G0017695	Chd3	99	85.266	ENSACAG00000004276	CHD3	95	84.654	Anolis_carolinensis
MGP_PahariEiJ_G0017695	Chd3	99	93.277	ENSANAG00000034323	CHD3	99	97.286	Aotus_nancymaae
MGP_PahariEiJ_G0017695	Chd3	98	74.799	ENSACLG00000009222	chd3	99	74.673	Astatotilapia_calliptera
MGP_PahariEiJ_G0017695	Chd3	100	96.451	ENSBTAG00000014377	CHD3	99	96.451	Bos_taurus
MGP_PahariEiJ_G0017695	Chd3	100	97.719	ENSCJAG00000014766	CHD3	99	97.322	Callithrix_jacchus
MGP_PahariEiJ_G0017695	Chd3	100	95.620	ENSCAFG00000016859	CHD3	98	97.105	Canis_familiaris
MGP_PahariEiJ_G0017695	Chd3	96	97.170	ENSCAFG00020007422	CHD3	100	97.001	Canis_lupus_dingo
MGP_PahariEiJ_G0017695	Chd3	100	95.779	ENSCHIG00000016737	CHD3	99	97.107	Capra_hircus
MGP_PahariEiJ_G0017695	Chd3	100	97.825	ENSTSYG00000035658	CHD3	98	97.677	Carlito_syrichta
MGP_PahariEiJ_G0017695	Chd3	100	92.913	ENSCAPG00000014864	CHD3	99	93.901	Cavia_aperea
MGP_PahariEiJ_G0017695	Chd3	100	95.623	ENSCPOG00000022653	CHD3	99	96.522	Cavia_porcellus
MGP_PahariEiJ_G0017695	Chd3	100	97.613	ENSCCAG00000034792	CHD3	99	97.084	Cebus_capucinus
MGP_PahariEiJ_G0017695	Chd3	100	97.719	ENSCATG00000041717	CHD3	99	96.986	Cercocebus_atys
MGP_PahariEiJ_G0017695	Chd3	100	97.613	ENSCLAG00000010523	CHD3	100	97.519	Chinchilla_lanigera
MGP_PahariEiJ_G0017695	Chd3	100	95.831	ENSCSAG00000011122	CHD3	99	97.260	Chlorocebus_sabaeus
MGP_PahariEiJ_G0017695	Chd3	93	83.854	ENSCPBG00000011966	CHD3	99	87.627	Chrysemys_picta_bellii
MGP_PahariEiJ_G0017695	Chd3	100	97.613	ENSCANG00000037641	CHD3	98	97.522	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0017695	Chd3	100	98.621	ENSCGRG00001011306	Chd3	100	98.501	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0017695	Chd3	99	91.616	ENSCGRG00000007878	Chd3	99	98.529	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0017695	Chd3	92	83.650	ENSCSEG00000004489	chd3	98	78.351	Cynoglossus_semilaevis
MGP_PahariEiJ_G0017695	Chd3	96	74.355	ENSCVAG00000007293	chd3	99	75.081	Cyprinodon_variegatus
MGP_PahariEiJ_G0017695	Chd3	95	77.913	ENSDARG00000021405	chd3	99	76.248	Danio_rerio
MGP_PahariEiJ_G0017695	Chd3	100	80.498	ENSDNOG00000047846	CHD3	98	82.466	Dasypus_novemcinctus
MGP_PahariEiJ_G0017695	Chd3	100	97.029	ENSDORG00000010713	Chd3	100	96.899	Dipodomys_ordii
MGP_PahariEiJ_G0017695	Chd3	100	89.161	ENSETEG00000017733	CHD3	100	90.763	Echinops_telfairi
MGP_PahariEiJ_G0017695	Chd3	52	77.666	ENSEBUG00000008310	chd3	99	70.057	Eptatretus_burgeri
MGP_PahariEiJ_G0017695	Chd3	93	95.761	ENSEASG00005019360	CHD3	100	97.221	Equus_asinus_asinus
MGP_PahariEiJ_G0017695	Chd3	93	95.761	ENSECAG00000010051	CHD3	100	97.275	Equus_caballus
MGP_PahariEiJ_G0017695	Chd3	89	93.443	ENSEEUG00000015205	CHD3	92	94.444	Erinaceus_europaeus
MGP_PahariEiJ_G0017695	Chd3	81	90.476	ENSELUG00000019499	chd3	99	90.476	Esox_lucius
MGP_PahariEiJ_G0017695	Chd3	100	96.354	ENSFCAG00000009629	CHD3	99	96.354	Felis_catus
MGP_PahariEiJ_G0017695	Chd3	100	93.226	ENSFDAG00000008220	CHD3	99	94.924	Fukomys_damarensis
MGP_PahariEiJ_G0017695	Chd3	90	80.000	ENSGMOG00000013599	chd3	91	80.609	Gadus_morhua
MGP_PahariEiJ_G0017695	Chd3	62	75.107	ENSGAFG00000004055	chd3	99	76.219	Gambusia_affinis
MGP_PahariEiJ_G0017695	Chd3	99	70.749	ENSGACG00000019275	chd3	100	70.367	Gasterosteus_aculeatus
MGP_PahariEiJ_G0017695	Chd3	77	86.762	ENSGAGG00000013164	CHD3	98	87.101	Gopherus_agassizii
MGP_PahariEiJ_G0017695	Chd3	100	97.666	ENSGGOG00000013496	CHD3	98	97.574	Gorilla_gorilla
MGP_PahariEiJ_G0017695	Chd3	100	97.454	ENSHGLG00000012017	CHD3	100	97.076	Heterocephalus_glaber_female
MGP_PahariEiJ_G0017695	Chd3	89	89.448	ENSHGLG00100013902	CHD3	99	89.514	Heterocephalus_glaber_male
MGP_PahariEiJ_G0017695	Chd3	97	72.586	ENSHCOG00000010170	chd3	96	73.089	Hippocampus_comes
MGP_PahariEiJ_G0017695	Chd3	94	73.521	ENSIPUG00000003271	chd3	94	79.294	Ictalurus_punctatus
MGP_PahariEiJ_G0017695	Chd3	100	97.507	ENSSTOG00000025907	CHD3	100	97.416	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0017695	Chd3	100	96.764	ENSJJAG00000017633	Chd3	100	96.641	Jaculus_jaculus
MGP_PahariEiJ_G0017695	Chd3	87	90.047	ENSKMAG00000019292	chd3	97	75.660	Kryptolebias_marmoratus
MGP_PahariEiJ_G0017695	Chd3	96	71.475	ENSLBEG00000028485	chd3	92	87.826	Labrus_bergylta
MGP_PahariEiJ_G0017695	Chd3	99	74.974	ENSLACG00000008031	CHD3	98	75.433	Latimeria_chalumnae
MGP_PahariEiJ_G0017695	Chd3	99	76.951	ENSLOCG00000013965	chd3	97	77.212	Lepisosteus_oculatus
MGP_PahariEiJ_G0017695	Chd3	98	91.693	ENSLAFG00000000572	CHD3	100	93.270	Loxodonta_africana
MGP_PahariEiJ_G0017695	Chd3	100	97.666	ENSMFAG00000020113	CHD3	98	97.574	Macaca_fascicularis
MGP_PahariEiJ_G0017695	Chd3	100	93.330	ENSMMUG00000022221	CHD3	99	94.444	Macaca_mulatta
MGP_PahariEiJ_G0017695	Chd3	100	97.666	ENSMNEG00000001728	CHD3	99	96.727	Macaca_nemestrina
MGP_PahariEiJ_G0017695	Chd3	100	97.719	ENSMLEG00000032249	CHD3	98	97.625	Mandrillus_leucophaeus
MGP_PahariEiJ_G0017695	Chd3	88	76.502	ENSMAMG00000000564	chd3	94	86.705	Mastacembelus_armatus
MGP_PahariEiJ_G0017695	Chd3	100	98.408	ENSMAUG00000013873	Chd3	99	97.225	Mesocricetus_auratus
MGP_PahariEiJ_G0017695	Chd3	100	96.934	ENSMICG00000008741	CHD3	99	96.934	Microcebus_murinus
MGP_PahariEiJ_G0017695	Chd3	100	98.674	ENSMOCG00000004848	Chd3	100	98.549	Microtus_ochrogaster
MGP_PahariEiJ_G0017695	Chd3	98	74.385	ENSMMOG00000012699	chd3	99	73.802	Mola_mola
MGP_PahariEiJ_G0017695	Chd3	93	93.920	ENSMODG00000007509	CHD3	100	94.173	Monodelphis_domestica
MGP_PahariEiJ_G0017695	Chd3	100	99.310	MGP_CAROLIEiJ_G0016564	Chd3	100	99.310	Mus_caroli
MGP_PahariEiJ_G0017695	Chd3	100	99.416	ENSMUSG00000018474	Chd3	99	99.416	Mus_musculus
MGP_PahariEiJ_G0017695	Chd3	100	99.363	MGP_SPRETEiJ_G0017400	Chd3	100	99.363	Mus_spretus
MGP_PahariEiJ_G0017695	Chd3	87	95.520	ENSMPUG00000008861	CHD3	100	97.203	Mustela_putorius_furo
MGP_PahariEiJ_G0017695	Chd3	100	94.430	ENSMLUG00000014643	-	98	96.095	Myotis_lucifugus
MGP_PahariEiJ_G0017695	Chd3	100	96.613	ENSNGAG00000000773	Chd3	98	98.020	Nannospalax_galili
MGP_PahariEiJ_G0017695	Chd3	88	76.074	ENSNBRG00000000636	chd3	97	76.657	Neolamprologus_brichardi
MGP_PahariEiJ_G0017695	Chd3	100	94.854	ENSNLEG00000009770	CHD3	100	94.395	Nomascus_leucogenys
MGP_PahariEiJ_G0017695	Chd3	88	89.571	ENSMEUG00000005852	CHD3	87	90.437	Notamacropus_eugenii
MGP_PahariEiJ_G0017695	Chd3	95	94.490	ENSOPRG00000011069	CHD3	100	95.789	Ochotona_princeps
MGP_PahariEiJ_G0017695	Chd3	100	95.727	ENSODEG00000017785	CHD3	99	97.157	Octodon_degus
MGP_PahariEiJ_G0017695	Chd3	99	74.726	ENSONIG00000009292	chd3	100	74.667	Oreochromis_niloticus
MGP_PahariEiJ_G0017695	Chd3	99	90.805	ENSOCUG00000029299	CHD3	100	92.124	Oryctolagus_cuniculus
MGP_PahariEiJ_G0017695	Chd3	85	71.806	ENSORLG00000007107	chd3	93	72.113	Oryzias_latipes
MGP_PahariEiJ_G0017695	Chd3	60	72.968	ENSORLG00020008387	chd3	95	73.587	Oryzias_latipes_hni
MGP_PahariEiJ_G0017695	Chd3	88	77.460	ENSOMEG00000013691	chd3	99	78.194	Oryzias_melastigma
MGP_PahariEiJ_G0017695	Chd3	100	95.258	ENSOGAG00000003216	CHD3	99	96.701	Otolemur_garnettii
MGP_PahariEiJ_G0017695	Chd3	100	92.820	ENSOARG00000017855	CHD3	99	94.932	Ovis_aries
MGP_PahariEiJ_G0017695	Chd3	100	95.298	ENSPPAG00000032886	CHD3	98	95.270	Pan_paniscus
MGP_PahariEiJ_G0017695	Chd3	100	97.135	ENSPPRG00000000626	CHD3	100	96.444	Panthera_pardus
MGP_PahariEiJ_G0017695	Chd3	100	97.825	ENSPTRG00000008714	CHD3	99	97.228	Pan_troglodytes
MGP_PahariEiJ_G0017695	Chd3	100	96.021	ENSPANG00000023938	CHD3	98	97.362	Papio_anubis
MGP_PahariEiJ_G0017695	Chd3	95	81.174	ENSPKIG00000006305	chd3	99	80.079	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0017695	Chd3	57	90.055	ENSPSIG00000010177	CHD3	98	90.602	Pelodiscus_sinensis
MGP_PahariEiJ_G0017695	Chd3	100	96.873	ENSPEMG00000014262	Chd3	99	98.072	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0017695	Chd3	100	93.463	ENSPCIG00000005442	CHD3	100	93.238	Phascolarctos_cinereus
MGP_PahariEiJ_G0017695	Chd3	99	77.466	ENSPFOG00000012464	chd3	92	76.518	Poecilia_formosa
MGP_PahariEiJ_G0017695	Chd3	83	87.391	ENSPLAG00000002887	chd3	98	72.169	Poecilia_latipinna
MGP_PahariEiJ_G0017695	Chd3	56	81.469	ENSPMEG00000016725	chd3	94	73.137	Poecilia_mexicana
MGP_PahariEiJ_G0017695	Chd3	99	75.879	ENSPREG00000011044	chd3	98	78.735	Poecilia_reticulata
MGP_PahariEiJ_G0017695	Chd3	98	92.593	ENSPPYG00000007940	CHD3	98	94.358	Pongo_abelii
MGP_PahariEiJ_G0017695	Chd3	96	95.644	ENSPCAG00000004350	CHD3	96	96.698	Procavia_capensis
MGP_PahariEiJ_G0017695	Chd3	100	97.560	ENSPCOG00000020952	CHD3	100	96.864	Propithecus_coquereli
MGP_PahariEiJ_G0017695	Chd3	86	93.570	ENSPVAG00000016344	CHD3	87	95.144	Pteropus_vampyrus
MGP_PahariEiJ_G0017695	Chd3	97	78.157	ENSPNAG00000020393	chd3	98	81.884	Pygocentrus_nattereri
MGP_PahariEiJ_G0017695	Chd3	93	96.709	ENSRNOG00000009722	Chd3	100	98.583	Rattus_norvegicus
MGP_PahariEiJ_G0017695	Chd3	100	94.241	ENSRBIG00000033562	CHD3	99	93.811	Rhinopithecus_bieti
MGP_PahariEiJ_G0017695	Chd3	100	97.719	ENSRROG00000029554	CHD3	98	97.625	Rhinopithecus_roxellana
MGP_PahariEiJ_G0017695	Chd3	100	97.772	ENSSBOG00000020719	CHD3	99	97.329	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0017695	Chd3	100	94.062	ENSSHAG00000014412	CHD3	100	93.831	Sarcophilus_harrisii
MGP_PahariEiJ_G0017695	Chd3	90	80.479	ENSSFOG00015023123	chd3	98	75.661	Scleropages_formosus
MGP_PahariEiJ_G0017695	Chd3	93	73.849	ENSSMAG00000006451	chd3	99	77.237	Scophthalmus_maximus
MGP_PahariEiJ_G0017695	Chd3	58	72.919	ENSSDUG00000005792	chd3	95	73.285	Seriola_dumerili
MGP_PahariEiJ_G0017695	Chd3	95	80.205	ENSSPAG00000013694	chd3	97	81.443	Stegastes_partitus
MGP_PahariEiJ_G0017695	Chd3	100	95.833	ENSSSCG00000021363	CHD3	100	97.113	Sus_scrofa
MGP_PahariEiJ_G0017695	Chd3	78	76.560	ENSTRUG00000014990	chd3	95	73.110	Takifugu_rubripes
MGP_PahariEiJ_G0017695	Chd3	98	74.378	ENSTNIG00000012998	chd3	99	73.131	Tetraodon_nigroviridis
MGP_PahariEiJ_G0017695	Chd3	67	100.000	ENSTBEG00000011454	-	71	100.000	Tupaia_belangeri
MGP_PahariEiJ_G0017695	Chd3	99	95.774	ENSTTRG00000010295	CHD3	97	97.532	Tursiops_truncatus
MGP_PahariEiJ_G0017695	Chd3	93	94.324	ENSUAMG00000005475	CHD3	99	95.813	Ursus_americanus
MGP_PahariEiJ_G0017695	Chd3	58	100.000	ENSVPAG00000010794	-	62	100.000	Vicugna_pacos
MGP_PahariEiJ_G0017695	Chd3	98	97.233	ENSVVUG00000028011	CHD3	99	96.912	Vulpes_vulpes
MGP_PahariEiJ_G0017695	Chd3	99	73.125	ENSXETG00000012991	chd3	92	73.881	Xenopus_tropicalis
MGP_PahariEiJ_G0017695	Chd3	54	82.957	ENSXCOG00000000809	chd3	96	83.070	Xiphophorus_couchianus
MGP_PahariEiJ_G0017695	Chd3	82	86.127	ENSXMAG00000016035	chd3	99	88.095	Xiphophorus_maculatus