EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0017866 (Gene tree)
Gene ID: 110331441
Gene Symbol: Smg6
Alias: -
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Plus strand
Length: 242420 bases
Position: chr14:42664616-42907035
Accession: 110331441
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0034954	EST1	PF10374.9	3.1e-13	1	1
MGP_PahariEiJ_P0034954	EST1_DNA_bind	PF10373.9	4.1e-59	1	1
MGP_PahariEiJ_P0034957	EST1_DNA_bind	PF10373.9	8.6e-11	1	1
MGP_PahariEiJ_P0034954	PIN_4	PF13638.6	1.9e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0034954	-	5882	-	MGP_PahariEiJ_P0034954	1417 (aa)	XP_021067695	UPI000A3080C9
MGP_PahariEiJ_T0034955	-	4075	-	MGP_PahariEiJ_P0034955	355 (aa)	-	-
MGP_PahariEiJ_T0034956	-	2174	-	-	- (aa)	-	-
MGP_PahariEiJ_T0034957	-	714	-	MGP_PahariEiJ_P0034957	238 (aa)	-	-
MGP_PahariEiJ_T0034958	-	487	-	-	- (aa)	-	-
MGP_PahariEiJ_T0034959	-	637	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0017866's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0017866's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0017866	Smg6	100	90.416	ENSG00000070366	SMG6	100	97.456	Homo_sapiens
MGP_PahariEiJ_G0017866	Smg6	95	67.449	ENSAPOG00000019448	smg6	74	53.906	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0017866	Smg6	100	91.114	ENSAMEG00000007632	SMG6	100	91.114	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0017866	Smg6	96	65.352	ENSAOCG00000002630	smg6	74	54.062	Amphiprion_ocellaris
MGP_PahariEiJ_G0017866	Smg6	96	65.352	ENSAPEG00000019101	smg6	74	54.219	Amphiprion_percula
MGP_PahariEiJ_G0017866	Smg6	96	63.866	ENSATEG00000006483	smg6	73	54.277	Anabas_testudineus
MGP_PahariEiJ_G0017866	Smg6	98	70.950	ENSACAG00000011783	SMG6	99	57.402	Anolis_carolinensis
MGP_PahariEiJ_G0017866	Smg6	100	90.416	ENSANAG00000035760	SMG6	100	90.416	Aotus_nancymaae
MGP_PahariEiJ_G0017866	Smg6	96	64.804	ENSACLG00000005288	smg6	80	54.631	Astatotilapia_calliptera
MGP_PahariEiJ_G0017866	Smg6	98	65.625	ENSAMXG00000017326	smg6	99	50.243	Astyanax_mexicanus
MGP_PahariEiJ_G0017866	Smg6	100	91.044	ENSBTAG00000000267	SMG6	100	91.044	Bos_taurus
MGP_PahariEiJ_G0017866	Smg6	96	94.760	ENSCJAG00000001820	SMG6	100	90.627	Callithrix_jacchus
MGP_PahariEiJ_G0017866	Smg6	100	90.691	ENSCAFG00000019260	SMG6	100	90.691	Canis_familiaris
MGP_PahariEiJ_G0017866	Smg6	100	90.691	ENSCAFG00020009770	SMG6	100	90.691	Canis_lupus_dingo
MGP_PahariEiJ_G0017866	Smg6	98	94.813	ENSCHIG00000021998	SMG6	100	90.903	Capra_hircus
MGP_PahariEiJ_G0017866	Smg6	100	90.698	ENSTSYG00000003406	SMG6	100	97.456	Carlito_syrichta
MGP_PahariEiJ_G0017866	Smg6	98	75.971	ENSCAPG00000016197	SMG6	99	82.904	Cavia_aperea
MGP_PahariEiJ_G0017866	Smg6	99	93.671	ENSCPOG00000014878	SMG6	99	93.671	Cavia_porcellus
MGP_PahariEiJ_G0017866	Smg6	100	90.627	ENSCCAG00000035801	SMG6	100	90.627	Cebus_capucinus
MGP_PahariEiJ_G0017866	Smg6	100	90.839	ENSCATG00000031956	SMG6	100	90.839	Cercocebus_atys
MGP_PahariEiJ_G0017866	Smg6	100	94.538	ENSCLAG00000006748	SMG6	100	94.538	Chinchilla_lanigera
MGP_PahariEiJ_G0017866	Smg6	100	91.191	ENSCSAG00000013800	SMG6	100	91.191	Chlorocebus_sabaeus
MGP_PahariEiJ_G0017866	Smg6	57	98.507	ENSCHOG00000005024	-	73	98.507	Choloepus_hoffmanni
MGP_PahariEiJ_G0017866	Smg6	98	81.556	ENSCPBG00000020369	SMG6	100	71.419	Chrysemys_picta_bellii
MGP_PahariEiJ_G0017866	Smg6	68	35.260	ENSCING00000010099	-	99	35.385	Ciona_intestinalis
MGP_PahariEiJ_G0017866	Smg6	95	94.690	ENSCANG00000031764	SMG6	100	97.065	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0017866	Smg6	67	98.326	ENSCGRG00001019595	Smg6	98	93.086	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0017866	Smg6	98	93.084	ENSCGRG00000007782	Smg6	100	88.320	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0017866	Smg6	97	62.881	ENSCSEG00000012757	smg6	88	53.281	Cynoglossus_semilaevis
MGP_PahariEiJ_G0017866	Smg6	87	67.619	ENSCVAG00000012789	smg6	86	53.108	Cyprinodon_variegatus
MGP_PahariEiJ_G0017866	Smg6	92	67.879	ENSDARG00000100481	smg6	100	50.236	Danio_rerio
MGP_PahariEiJ_G0017866	Smg6	100	90.486	ENSDNOG00000048283	SMG6	100	90.486	Dasypus_novemcinctus
MGP_PahariEiJ_G0017866	Smg6	95	95.575	ENSDORG00000016614	Smg6	94	97.297	Dipodomys_ordii
MGP_PahariEiJ_G0017866	Smg6	93	100.000	ENSETEG00000016790	SMG6	93	100.000	Echinops_telfairi
MGP_PahariEiJ_G0017866	Smg6	98	49.857	ENSEBUG00000005059	smg6	71	49.616	Eptatretus_burgeri
MGP_PahariEiJ_G0017866	Smg6	99	91.172	ENSEASG00005009318	SMG6	99	91.172	Equus_asinus_asinus
MGP_PahariEiJ_G0017866	Smg6	99	91.172	ENSECAG00000006519	SMG6	99	91.172	Equus_caballus
MGP_PahariEiJ_G0017866	Smg6	100	80.324	ENSEEUG00000003493	SMG6	100	80.324	Erinaceus_europaeus
MGP_PahariEiJ_G0017866	Smg6	91	68.693	ENSELUG00000005934	smg6	67	55.756	Esox_lucius
MGP_PahariEiJ_G0017866	Smg6	100	91.608	ENSFCAG00000028817	SMG6	100	91.608	Felis_catus
MGP_PahariEiJ_G0017866	Smg6	98	80.403	ENSFALG00000006538	SMG6	100	70.940	Ficedula_albicollis
MGP_PahariEiJ_G0017866	Smg6	100	94.118	ENSFDAG00000015106	SMG6	100	94.118	Fukomys_damarensis
MGP_PahariEiJ_G0017866	Smg6	87	68.571	ENSFHEG00000013282	smg6	86	52.891	Fundulus_heteroclitus
MGP_PahariEiJ_G0017866	Smg6	83	56.459	ENSGMOG00000019077	smg6	58	68.224	Gadus_morhua
MGP_PahariEiJ_G0017866	Smg6	98	79.827	ENSGALG00000003108	SMG6	98	71.201	Gallus_gallus
MGP_PahariEiJ_G0017866	Smg6	87	68.571	ENSGAFG00000000379	smg6	74	53.297	Gambusia_affinis
MGP_PahariEiJ_G0017866	Smg6	95	66.962	ENSGACG00000020521	smg6	100	52.483	Gasterosteus_aculeatus
MGP_PahariEiJ_G0017866	Smg6	98	80.980	ENSGAGG00000025617	SMG6	100	71.246	Gopherus_agassizii
MGP_PahariEiJ_G0017866	Smg6	100	91.050	ENSGGOG00000017156	SMG6	100	91.050	Gorilla_gorilla
MGP_PahariEiJ_G0017866	Smg6	96	64.804	ENSHBUG00000021311	smg6	74	54.688	Haplochromis_burtoni
MGP_PahariEiJ_G0017866	Smg6	100	93.697	ENSHGLG00000012882	SMG6	100	93.697	Heterocephalus_glaber_female
MGP_PahariEiJ_G0017866	Smg6	100	93.697	ENSHGLG00100017815	SMG6	100	93.697	Heterocephalus_glaber_male
MGP_PahariEiJ_G0017866	Smg6	90	64.198	ENSHCOG00000008761	smg6	97	52.874	Hippocampus_comes
MGP_PahariEiJ_G0017866	Smg6	95	67.742	ENSIPUG00000012493	smg6	75	54.826	Ictalurus_punctatus
MGP_PahariEiJ_G0017866	Smg6	100	95.378	ENSSTOG00000028127	SMG6	100	95.378	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0017866	Smg6	98	96.542	ENSJJAG00000015367	Smg6	95	87.868	Jaculus_jaculus
MGP_PahariEiJ_G0017866	Smg6	90	68.085	ENSKMAG00000000279	smg6	86	53.888	Kryptolebias_marmoratus
MGP_PahariEiJ_G0017866	Smg6	97	64.444	ENSLBEG00000002184	smg6	73	53.396	Labrus_bergylta
MGP_PahariEiJ_G0017866	Smg6	94	79.911	ENSLACG00000003276	SMG6	100	80.000	Latimeria_chalumnae
MGP_PahariEiJ_G0017866	Smg6	77	82.784	ENSLACG00000000806	-	98	58.600	Latimeria_chalumnae
MGP_PahariEiJ_G0017866	Smg6	97	67.816	ENSLOCG00000006448	smg6	99	53.905	Lepisosteus_oculatus
MGP_PahariEiJ_G0017866	Smg6	95	95.133	ENSLAFG00000001261	SMG6	100	89.711	Loxodonta_africana
MGP_PahariEiJ_G0017866	Smg6	100	91.191	ENSMFAG00000003394	SMG6	100	91.191	Macaca_fascicularis
MGP_PahariEiJ_G0017866	Smg6	100	91.121	ENSMMUG00000023161	SMG6	100	91.121	Macaca_mulatta
MGP_PahariEiJ_G0017866	Smg6	95	94.690	ENSMNEG00000044592	SMG6	100	86.709	Macaca_nemestrina
MGP_PahariEiJ_G0017866	Smg6	93	96.805	ENSMLEG00000029353	SMG6	100	96.805	Mandrillus_leucophaeus
MGP_PahariEiJ_G0017866	Smg6	96	65.915	ENSMAMG00000020119	smg6	79	54.988	Mastacembelus_armatus
MGP_PahariEiJ_G0017866	Smg6	96	64.804	ENSMZEG00005024736	smg6	74	54.481	Maylandia_zebra
MGP_PahariEiJ_G0017866	Smg6	98	80.115	ENSMGAG00000005401	-	99	64.806	Meleagris_gallopavo
MGP_PahariEiJ_G0017866	Smg6	52	90.244	ENSMGAG00000017200	-	100	85.014	Meleagris_gallopavo
MGP_PahariEiJ_G0017866	Smg6	96	97.380	ENSMAUG00000017203	-	99	97.380	Mesocricetus_auratus
MGP_PahariEiJ_G0017866	Smg6	100	92.389	ENSMICG00000012913	SMG6	100	92.389	Microcebus_murinus
MGP_PahariEiJ_G0017866	Smg6	99	96.186	ENSMOCG00000019924	-	99	96.186	Microtus_ochrogaster
MGP_PahariEiJ_G0017866	Smg6	92	65.465	ENSMMOG00000010883	smg6	100	47.719	Mola_mola
MGP_PahariEiJ_G0017866	Smg6	81	45.641	ENSMODG00000024395	-	99	40.509	Monodelphis_domestica
MGP_PahariEiJ_G0017866	Smg6	73	48.295	ENSMODG00000024410	-	99	41.292	Monodelphis_domestica
MGP_PahariEiJ_G0017866	Smg6	81	45.918	ENSMODG00000024463	-	99	42.074	Monodelphis_domestica
MGP_PahariEiJ_G0017866	Smg6	73	48.864	ENSMODG00000024460	-	99	41.879	Monodelphis_domestica
MGP_PahariEiJ_G0017866	Smg6	96	92.576	ENSMODG00000010622	SMG6	100	84.951	Monodelphis_domestica
MGP_PahariEiJ_G0017866	Smg6	97	66.387	ENSMALG00000001106	smg6	73	54.934	Monopterus_albus
MGP_PahariEiJ_G0017866	Smg6	100	98.739	MGP_CAROLIEiJ_G0016729	Smg6	100	98.739	Mus_caroli
MGP_PahariEiJ_G0017866	Smg6	100	99.160	ENSMUSG00000038290	Smg6	100	99.160	Mus_musculus
MGP_PahariEiJ_G0017866	Smg6	100	99.160	MGP_SPRETEiJ_G0017572	Smg6	100	99.160	Mus_spretus
MGP_PahariEiJ_G0017866	Smg6	98	93.948	ENSMPUG00000013046	SMG6	100	90.903	Mustela_putorius_furo
MGP_PahariEiJ_G0017866	Smg6	100	90.268	ENSMLUG00000005739	SMG6	100	90.268	Myotis_lucifugus
MGP_PahariEiJ_G0017866	Smg6	100	94.958	ENSNGAG00000007287	Smg6	100	94.958	Nannospalax_galili
MGP_PahariEiJ_G0017866	Smg6	96	64.804	ENSNBRG00000009511	smg6	80	54.203	Neolamprologus_brichardi
MGP_PahariEiJ_G0017866	Smg6	95	94.248	ENSNLEG00000017171	SMG6	100	97.260	Nomascus_leucogenys
MGP_PahariEiJ_G0017866	Smg6	96	91.703	ENSMEUG00000015804	SMG6	100	81.537	Notamacropus_eugenii
MGP_PahariEiJ_G0017866	Smg6	71	90.000	ENSOPRG00000000579	SMG6	83	98.421	Ochotona_princeps
MGP_PahariEiJ_G0017866	Smg6	95	94.273	ENSODEG00000008038	SMG6	100	84.659	Octodon_degus
MGP_PahariEiJ_G0017866	Smg6	96	65.363	ENSONIG00000005594	smg6	100	51.469	Oreochromis_niloticus
MGP_PahariEiJ_G0017866	Smg6	98	86.455	ENSOANG00000021103	-	100	85.619	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0017866	Smg6	100	91.274	ENSOCUG00000013018	SMG6	100	91.414	Oryctolagus_cuniculus
MGP_PahariEiJ_G0017866	Smg6	92	66.465	ENSORLG00000003317	smg6	74	53.339	Oryzias_latipes
MGP_PahariEiJ_G0017866	Smg6	92	66.465	ENSORLG00020015343	smg6	74	53.307	Oryzias_latipes_hni
MGP_PahariEiJ_G0017866	Smg6	92	66.767	ENSORLG00015020454	smg6	74	53.260	Oryzias_latipes_hsok
MGP_PahariEiJ_G0017866	Smg6	97	63.429	ENSOMEG00000010838	smg6	75	53.029	Oryzias_melastigma
MGP_PahariEiJ_G0017866	Smg6	100	91.761	ENSOGAG00000004483	SMG6	100	91.761	Otolemur_garnettii
MGP_PahariEiJ_G0017866	Smg6	98	94.813	ENSOARG00000015076	SMG6	100	90.751	Ovis_aries
MGP_PahariEiJ_G0017866	Smg6	100	90.980	ENSPPAG00000043296	SMG6	100	90.980	Pan_paniscus
MGP_PahariEiJ_G0017866	Smg6	100	91.749	ENSPPRG00000014581	SMG6	100	91.749	Panthera_pardus
MGP_PahariEiJ_G0017866	Smg6	98	91.835	ENSPTIG00000008925	SMG6	100	97.847	Panthera_tigris_altaica
MGP_PahariEiJ_G0017866	Smg6	100	90.980	ENSPTRG00000008544	SMG6	100	97.456	Pan_troglodytes
MGP_PahariEiJ_G0017866	Smg6	100	91.050	ENSPANG00000024588	SMG6	100	91.050	Papio_anubis
MGP_PahariEiJ_G0017866	Smg6	98	80.692	ENSPSIG00000006660	SMG6	96	69.098	Pelodiscus_sinensis
MGP_PahariEiJ_G0017866	Smg6	91	68.072	ENSPMGG00000000844	smg6	100	59.949	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0017866	Smg6	98	97.118	ENSPEMG00000020707	Smg6	98	98.690	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0017866	Smg6	87	68.889	ENSPFOG00000012035	smg6	100	50.437	Poecilia_formosa
MGP_PahariEiJ_G0017866	Smg6	87	68.571	ENSPLAG00000017660	smg6	74	52.776	Poecilia_latipinna
MGP_PahariEiJ_G0017866	Smg6	87	68.889	ENSPMEG00000000258	smg6	74	53.428	Poecilia_mexicana
MGP_PahariEiJ_G0017866	Smg6	87	68.889	ENSPREG00000010066	smg6	86	53.417	Poecilia_reticulata
MGP_PahariEiJ_G0017866	Smg6	100	85.654	ENSPPYG00000007790	SMG6	100	85.654	Pongo_abelii
MGP_PahariEiJ_G0017866	Smg6	95	91.150	ENSPCAG00000000552	SMG6	100	85.976	Procavia_capensis
MGP_PahariEiJ_G0017866	Smg6	96	96.507	ENSPCOG00000020925	SMG6	100	91.966	Propithecus_coquereli
MGP_PahariEiJ_G0017866	Smg6	95	93.805	ENSPVAG00000002159	SMG6	86	96.552	Pteropus_vampyrus
MGP_PahariEiJ_G0017866	Smg6	96	64.804	ENSPNYG00000024151	smg6	79	56.610	Pundamilia_nyererei
MGP_PahariEiJ_G0017866	Smg6	87	61.395	ENSPNAG00000015480	smg6	74	62.703	Pygocentrus_nattereri
MGP_PahariEiJ_G0017866	Smg6	100	98.028	ENSRNOG00000003041	Smg6	100	97.038	Rattus_norvegicus
MGP_PahariEiJ_G0017866	Smg6	100	91.050	ENSRBIG00000024746	SMG6	100	91.050	Rhinopithecus_bieti
MGP_PahariEiJ_G0017866	Smg6	100	91.121	ENSRROG00000030423	SMG6	100	96.673	Rhinopithecus_roxellana
MGP_PahariEiJ_G0017866	Smg6	100	90.557	ENSSBOG00000022518	SMG6	100	88.936	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0017866	Smg6	87	41.784	ENSSHAG00000000380	-	99	40.120	Sarcophilus_harrisii
MGP_PahariEiJ_G0017866	Smg6	98	89.337	ENSSHAG00000010045	SMG6	98	83.966	Sarcophilus_harrisii
MGP_PahariEiJ_G0017866	Smg6	97	66.289	ENSSFOG00015005436	smg6	70	56.638	Scleropages_formosus
MGP_PahariEiJ_G0017866	Smg6	96	66.197	ENSSMAG00000019777	smg6	85	54.297	Scophthalmus_maximus
MGP_PahariEiJ_G0017866	Smg6	96	66.571	ENSSDUG00000016412	smg6	79	51.546	Seriola_dumerili
MGP_PahariEiJ_G0017866	Smg6	96	66.571	ENSSLDG00000020747	smg6	83	50.558	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0017866	Smg6	94	82.222	ENSSPUG00000007152	SMG6	99	69.365	Sphenodon_punctatus
MGP_PahariEiJ_G0017866	Smg6	96	64.225	ENSSPAG00000015633	smg6	74	53.931	Stegastes_partitus
MGP_PahariEiJ_G0017866	Smg6	100	90.550	ENSSSCG00000017826	SMG6	100	90.550	Sus_scrofa
MGP_PahariEiJ_G0017866	Smg6	96	81.659	ENSTGUG00000005836	SMG6	100	71.208	Taeniopygia_guttata
MGP_PahariEiJ_G0017866	Smg6	92	68.373	ENSTRUG00000000358	smg6	81	54.247	Takifugu_rubripes
MGP_PahariEiJ_G0017866	Smg6	92	67.771	ENSTNIG00000016164	smg6	100	48.945	Tetraodon_nigroviridis
MGP_PahariEiJ_G0017866	Smg6	96	97.794	ENSTBEG00000011424	SMG6	100	86.601	Tupaia_belangeri
MGP_PahariEiJ_G0017866	Smg6	95	94.690	ENSTTRG00000001175	SMG6	91	90.758	Tursiops_truncatus
MGP_PahariEiJ_G0017866	Smg6	100	91.344	ENSUAMG00000025152	SMG6	100	91.348	Ursus_americanus
MGP_PahariEiJ_G0017866	Smg6	95	94.955	ENSUMAG00000009306	SMG6	100	91.618	Ursus_maritimus
MGP_PahariEiJ_G0017866	Smg6	85	92.593	ENSVPAG00000000225	SMG6	88	92.593	Vicugna_pacos
MGP_PahariEiJ_G0017866	Smg6	100	90.480	ENSVVUG00000021727	SMG6	100	90.480	Vulpes_vulpes
MGP_PahariEiJ_G0017866	Smg6	98	68.300	ENSXETG00000023799	SMG6	100	58.985	Xenopus_tropicalis
MGP_PahariEiJ_G0017866	Smg6	87	67.508	ENSXCOG00000009867	smg6	74	54.451	Xiphophorus_couchianus
MGP_PahariEiJ_G0017866	Smg6	87	67.937	ENSXMAG00000010321	smg6	85	53.647	Xiphophorus_maculatus