EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
MGP_PahariEiJ_G0018371 (Gene tree)
Gene ID
110332184
Gene Symbol
Lsm12
Alias
1110032E16Rik|2600001B17Rik
Full Name
LSM12 homolog
Gene Type
protein_coding
Species
Mus_pahari
Status
putative
Strand
Minus strand
Length
22311 bases
Position
chr14:69610445-69632755
Accession
1919592
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
MGP_PahariEiJ_P0036900ADPF09793.92.5e-2611
MGP_PahariEiJ_P0036899ADPF09793.94.6e-2311
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
MGP_PahariEiJ_T0036901-569--- (aa)--
MGP_PahariEiJ_T0036900-2527-MGP_PahariEiJ_P0036900212 (aa)--
MGP_PahariEiJ_T0036903-409--- (aa)--
MGP_PahariEiJ_T0036902-488--- (aa)--
MGP_PahariEiJ_T0036899-1945-MGP_PahariEiJ_P0036899137 (aa)-UPI0000416DA0
Gene Model
Click here to download MGP_PahariEiJ_G0018371's gene model file
Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0018371's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
MGP_PahariEiJ_G0018371Lsm12100100.000ENSG00000161654LSM1210091.981Homo_sapiens
MGP_PahariEiJ_G0018371Lsm1210079.343ENSAPOG00000007907lsm12b10079.343Acanthochromis_polyacanthus
MGP_PahariEiJ_G0018371Lsm12100100.000ENSAMEG00000018321LSM1210090.233Ailuropoda_melanoleuca
MGP_PahariEiJ_G0018371Lsm1210077.465ENSACIG00000008538lsm12b10077.465Amphilophus_citrinellus
MGP_PahariEiJ_G0018371Lsm1210078.873ENSAOCG00000021847lsm12b8878.873Amphiprion_ocellaris
MGP_PahariEiJ_G0018371Lsm1210078.873ENSAPEG00000002252lsm12b10078.873Amphiprion_percula
MGP_PahariEiJ_G0018371Lsm1210078.404ENSATEG00000005705lsm12b10078.404Anabas_testudineus
MGP_PahariEiJ_G0018371Lsm129986.190ENSACAG00000004618LSM129986.190Anolis_carolinensis
MGP_PahariEiJ_G0018371Lsm12100100.000ENSANAG00000029011LSM12100100.000Aotus_nancymaae
MGP_PahariEiJ_G0018371Lsm1210077.934ENSACLG00000026332lsm12b10077.934Astatotilapia_calliptera
MGP_PahariEiJ_G0018371Lsm1210077.934ENSAMXG00000032952lsm12b10077.934Astyanax_mexicanus
MGP_PahariEiJ_G0018371Lsm1210081.982ENSAMXG00000036117lsm12a9172.770Astyanax_mexicanus
MGP_PahariEiJ_G0018371Lsm12100100.000ENSBTAG00000016252LSM1210091.981Bos_taurus
MGP_PahariEiJ_G0018371Lsm12100100.000ENSCJAG00000048480LSM12100100.000Callithrix_jacchus
MGP_PahariEiJ_G0018371Lsm1210091.981ENSCAFG00000014379LSM129291.981Canis_familiaris
MGP_PahariEiJ_G0018371Lsm12100100.000ENSCAFG00020012173LSM1210091.981Canis_lupus_dingo
MGP_PahariEiJ_G0018371Lsm12100100.000ENSCHIG00000018175LSM1210091.981Capra_hircus
MGP_PahariEiJ_G0018371Lsm12100100.000ENSTSYG00000036361LSM1210091.981Carlito_syrichta
MGP_PahariEiJ_G0018371Lsm128196.396ENSCAPG00000009647LSM128985.475Cavia_aperea
MGP_PahariEiJ_G0018371Lsm1210098.165ENSCPOG00000012860LSM1210097.810Cavia_porcellus
MGP_PahariEiJ_G0018371Lsm12100100.000ENSCCAG00000032905LSM12100100.000Cebus_capucinus
MGP_PahariEiJ_G0018371Lsm12100100.000ENSCATG00000030577-100100.000Cercocebus_atys
MGP_PahariEiJ_G0018371Lsm1210098.540ENSCLAG00000015759LSM1210098.540Chinchilla_lanigera
MGP_PahariEiJ_G0018371Lsm1210091.509ENSCSAG00000003486LSM1210091.509Chlorocebus_sabaeus
MGP_PahariEiJ_G0018371Lsm128099.083ENSCHOG00000001198LSM1210099.083Choloepus_hoffmanni
MGP_PahariEiJ_G0018371Lsm129985.714ENSCPBG00000027105LSM129985.714Chrysemys_picta_bellii
MGP_PahariEiJ_G0018371Lsm12100100.000ENSCANG00000043328LSM12100100.000Colobus_angolensis_palliatus
MGP_PahariEiJ_G0018371Lsm12100100.000ENSCGRG00001002094Lsm12100100.000Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0018371Lsm1280100.000ENSCGRG00000004316Lsm129584.324Cricetulus_griseus_crigri
MGP_PahariEiJ_G0018371Lsm1210077.934ENSCSEG00000008434lsm12b10077.934Cynoglossus_semilaevis
MGP_PahariEiJ_G0018371Lsm1210085.455ENSCVAG00000008755lsm12b10077.934Cyprinodon_variegatus
MGP_PahariEiJ_G0018371Lsm1210075.676ENSDARG00000028848lsm12a10070.892Danio_rerio
MGP_PahariEiJ_G0018371Lsm1210078.404ENSDARG00000109510lsm12b10078.404Danio_rerio
MGP_PahariEiJ_G0018371Lsm1210091.509ENSDNOG00000002418LSM129191.509Dasypus_novemcinctus
MGP_PahariEiJ_G0018371Lsm12100100.000ENSDORG00000016381Lsm12100100.000Dipodomys_ordii
MGP_PahariEiJ_G0018371Lsm128430.939FBgn0030364Lsm127830.270Drosophila_melanogaster
MGP_PahariEiJ_G0018371Lsm129180.208ENSETEG00000011012-10080.208Echinops_telfairi
MGP_PahariEiJ_G0018371Lsm12100100.000ENSETEG00000008374LSM1210091.509Echinops_telfairi
MGP_PahariEiJ_G0018371Lsm128557.459ENSEBUG00000016299lsm12a9257.459Eptatretus_burgeri
MGP_PahariEiJ_G0018371Lsm12100100.000ENSEASG00005010155LSM1210091.981Equus_asinus_asinus
MGP_PahariEiJ_G0018371Lsm12100100.000ENSECAG00000009071LSM12100100.000Equus_caballus
MGP_PahariEiJ_G0018371Lsm128196.396ENSEEUG00000002419-10088.824Erinaceus_europaeus
MGP_PahariEiJ_G0018371Lsm1210075.587ENSELUG00000000256-10075.587Esox_lucius
MGP_PahariEiJ_G0018371Lsm1210077.465ENSELUG00000015538lsm12b10073.239Esox_lucius
MGP_PahariEiJ_G0018371Lsm12100100.000ENSFCAG00000037021LSM1210091.981Felis_catus
MGP_PahariEiJ_G0018371Lsm128197.297ENSFDAG00000008954LSM128789.091Fukomys_damarensis
MGP_PahariEiJ_G0018371Lsm1210084.545ENSFHEG00000019913lsm12b10076.995Fundulus_heteroclitus
MGP_PahariEiJ_G0018371Lsm128184.685ENSGMOG00000015449lsm12b10076.000Gadus_morhua
MGP_PahariEiJ_G0018371Lsm128092.661ENSGALG00000039803LSM1210084.706Gallus_gallus
MGP_PahariEiJ_G0018371Lsm1210085.455ENSGAFG00000011829lsm12b10077.465Gambusia_affinis
MGP_PahariEiJ_G0018371Lsm128184.685ENSGACG00000003428lsm12b10076.571Gasterosteus_aculeatus
MGP_PahariEiJ_G0018371Lsm129986.667ENSGAGG00000021965LSM129986.667Gopherus_agassizii
MGP_PahariEiJ_G0018371Lsm12100100.000ENSGGOG00000010589-100100.000Gorilla_gorilla
MGP_PahariEiJ_G0018371Lsm128184.685ENSHBUG00000007667lsm12b7477.717Haplochromis_burtoni
MGP_PahariEiJ_G0018371Lsm12100100.000ENSHGLG00000011411LSM12100100.000Heterocephalus_glaber_female
MGP_PahariEiJ_G0018371Lsm128099.091ENSHGLG00100000241LSM129679.798Heterocephalus_glaber_male
MGP_PahariEiJ_G0018371Lsm1210083.636ENSHCOG00000002094lsm12b10077.465Hippocampus_comes
MGP_PahariEiJ_G0018371Lsm129977.778ENSIPUG00000008936lsm12a9969.668Ictalurus_punctatus
MGP_PahariEiJ_G0018371Lsm1210078.404ENSIPUG00000014800lsm1210078.404Ictalurus_punctatus
MGP_PahariEiJ_G0018371Lsm12100100.000ENSSTOG00000007403LSM12100100.000Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0018371Lsm129780.676ENSJJAG00000011793-10080.676Jaculus_jaculus
MGP_PahariEiJ_G0018371Lsm128276.705ENSJJAG00000014652-9576.705Jaculus_jaculus
MGP_PahariEiJ_G0018371Lsm1210099.270ENSJJAG00000004364-10099.270Jaculus_jaculus
MGP_PahariEiJ_G0018371Lsm128778.378ENSKMAG00000007704lsm12b5778.378Kryptolebias_marmoratus
MGP_PahariEiJ_G0018371Lsm1210078.873ENSLBEG00000027999lsm12b10078.873Labrus_bergylta
MGP_PahariEiJ_G0018371Lsm129990.909ENSLACG00000015981LSM129982.857Latimeria_chalumnae
MGP_PahariEiJ_G0018371Lsm1210086.486ENSLOCG00000013079lsm12b9976.995Lepisosteus_oculatus
MGP_PahariEiJ_G0018371Lsm12100100.000ENSLAFG00000005202LSM1210091.981Loxodonta_africana
MGP_PahariEiJ_G0018371Lsm12100100.000ENSMFAG00000031376LSM12100100.000Macaca_fascicularis
MGP_PahariEiJ_G0018371Lsm1210067.883ENSMMUG00000042106-10086.207Macaca_mulatta
MGP_PahariEiJ_G0018371Lsm12100100.000ENSMMUG00000006804LSM12100100.000Macaca_mulatta
MGP_PahariEiJ_G0018371Lsm1210067.153ENSMMUG00000038408-10086.207Macaca_mulatta
MGP_PahariEiJ_G0018371Lsm12100100.000ENSMNEG00000030594-100100.000Macaca_nemestrina
MGP_PahariEiJ_G0018371Lsm12100100.000ENSMLEG00000039934LSM12100100.000Mandrillus_leucophaeus
MGP_PahariEiJ_G0018371Lsm1210078.404ENSMAMG00000004279lsm12b10078.404Mastacembelus_armatus
MGP_PahariEiJ_G0018371Lsm1210077.934ENSMZEG00005005754lsm12b10077.934Maylandia_zebra
MGP_PahariEiJ_G0018371Lsm1210099.270ENSMICG00000037219LSM1210099.270Microcebus_murinus
MGP_PahariEiJ_G0018371Lsm1210077.358ENSMOCG00000017015-8677.358Microtus_ochrogaster
MGP_PahariEiJ_G0018371Lsm12100100.000ENSMOCG00000019878-100100.000Microtus_ochrogaster
MGP_PahariEiJ_G0018371Lsm1210078.404ENSMMOG00000020848lsm12b10078.404Mola_mola
MGP_PahariEiJ_G0018371Lsm1210078.404ENSMALG00000007578lsm12b10078.404Monopterus_albus
MGP_PahariEiJ_G0018371Lsm1210099.270MGP_CAROLIEiJ_G0017241Lsm1210099.270Mus_caroli
MGP_PahariEiJ_G0018371Lsm12100100.000ENSMUSG00000020922Lsm12100100.000Mus_musculus
MGP_PahariEiJ_G0018371Lsm1210099.270MGP_SPRETEiJ_G0018084Lsm1210099.270Mus_spretus
MGP_PahariEiJ_G0018371Lsm1210099.083ENSMLUG00000006391LSM1210091.509Myotis_lucifugus
MGP_PahariEiJ_G0018371Lsm1210062.100ENSNGAG00000015429-10062.100Nannospalax_galili
MGP_PahariEiJ_G0018371Lsm12100100.000ENSNGAG00000001870Lsm12100100.000Nannospalax_galili
MGP_PahariEiJ_G0018371Lsm1210077.934ENSNBRG00000006266lsm12b10077.934Neolamprologus_brichardi
MGP_PahariEiJ_G0018371Lsm12100100.000ENSNLEG00000005580-100100.000Nomascus_leucogenys
MGP_PahariEiJ_G0018371Lsm128689.011ENSMEUG00000007501-10089.011Notamacropus_eugenii
MGP_PahariEiJ_G0018371Lsm12100100.000ENSOPRG00000008552LSM1210091.981Ochotona_princeps
MGP_PahariEiJ_G0018371Lsm1210081.604ENSODEG00000007886-7481.604Octodon_degus
MGP_PahariEiJ_G0018371Lsm1210098.165ENSODEG00000017998-10097.810Octodon_degus
MGP_PahariEiJ_G0018371Lsm1210077.934ENSONIG00000007933lsm12b10077.934Oreochromis_niloticus
MGP_PahariEiJ_G0018371Lsm125495.946ENSOANG00000031724-9195.946Ornithorhynchus_anatinus
MGP_PahariEiJ_G0018371Lsm12100100.000ENSOCUG00000008566-10090.233Oryctolagus_cuniculus
MGP_PahariEiJ_G0018371Lsm129993.636ENSOCUG00000027889-10085.782Oryctolagus_cuniculus
MGP_PahariEiJ_G0018371Lsm129992.661ENSOCUG00000024823-10084.834Oryctolagus_cuniculus
MGP_PahariEiJ_G0018371Lsm129985.782ENSOCUG00000021254-10085.782Oryctolagus_cuniculus
MGP_PahariEiJ_G0018371Lsm1210078.404ENSORLG00000011310lsm12b10078.404Oryzias_latipes
MGP_PahariEiJ_G0018371Lsm1210084.545ENSORLG00020002060lsm12b9278.404Oryzias_latipes_hni
MGP_PahariEiJ_G0018371Lsm1210084.545ENSORLG00015001647lsm12b9278.404Oryzias_latipes_hsok
MGP_PahariEiJ_G0018371Lsm1210078.404ENSOMEG00000006184lsm12b9278.404Oryzias_melastigma
MGP_PahariEiJ_G0018371Lsm1210091.509ENSOGAG00000010489LSM1210091.509Otolemur_garnettii
MGP_PahariEiJ_G0018371Lsm12100100.000ENSOARG00000006589LSM1210088.991Ovis_aries
MGP_PahariEiJ_G0018371Lsm1210092.254ENSPPAG00000034974-10092.254Pan_paniscus
MGP_PahariEiJ_G0018371Lsm12100100.000ENSPPRG00000023420LSM1210091.981Panthera_pardus
MGP_PahariEiJ_G0018371Lsm128198.198ENSPTIG00000012704-8290.000Panthera_tigris_altaica
MGP_PahariEiJ_G0018371Lsm1210098.540ENSPTIG00000014850-10098.540Panthera_tigris_altaica
MGP_PahariEiJ_G0018371Lsm12100100.000ENSPTRG00000009261LSM12100100.000Pan_troglodytes
MGP_PahariEiJ_G0018371Lsm12100100.000ENSPANG00000021315-100100.000Papio_anubis
MGP_PahariEiJ_G0018371Lsm1210086.486ENSPKIG00000021058lsm12b10079.343Paramormyrops_kingsleyae
MGP_PahariEiJ_G0018371Lsm129974.775ENSPKIG00000017932-9970.616Paramormyrops_kingsleyae
MGP_PahariEiJ_G0018371Lsm1210077.934ENSPMGG00000021344lsm12b10077.934Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0018371Lsm12100100.000ENSPEMG00000012199Lsm12100100.000Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0018371Lsm128960.317ENSPMAG00000005461lsm12a9960.317Petromyzon_marinus
MGP_PahariEiJ_G0018371Lsm1210096.330ENSPCIG00000020244LSM1210089.151Phascolarctos_cinereus
MGP_PahariEiJ_G0018371Lsm1210084.685ENSPFOG00000015930lsm12b10076.526Poecilia_formosa
MGP_PahariEiJ_G0018371Lsm1210084.685ENSPLAG00000021089lsm12b10076.526Poecilia_latipinna
MGP_PahariEiJ_G0018371Lsm1210084.685ENSPMEG00000012961lsm12b10076.526Poecilia_mexicana
MGP_PahariEiJ_G0018371Lsm128977.660ENSPREG00000010236lsm12b9577.660Poecilia_reticulata
MGP_PahariEiJ_G0018371Lsm12100100.000ENSPPYG00000008344LSM1210091.981Pongo_abelii
MGP_PahariEiJ_G0018371Lsm1274100.000ENSPCAG00000008790LSM1210089.773Procavia_capensis
MGP_PahariEiJ_G0018371Lsm12100100.000ENSPCOG00000027951LSM12100100.000Propithecus_coquereli
MGP_PahariEiJ_G0018371Lsm1210091.509ENSPVAG00000013706LSM1210091.509Pteropus_vampyrus
MGP_PahariEiJ_G0018371Lsm1210077.934ENSPNYG00000003386lsm12b10077.934Pundamilia_nyererei
MGP_PahariEiJ_G0018371Lsm1210081.982ENSPNAG00000018435lsm12a10070.892Pygocentrus_nattereri
MGP_PahariEiJ_G0018371Lsm1210084.545ENSPNAG00000004186lsm12b10076.526Pygocentrus_nattereri
MGP_PahariEiJ_G0018371Lsm12100100.000ENSRNOG00000020894Lsm1210091.981Rattus_norvegicus
MGP_PahariEiJ_G0018371Lsm12100100.000ENSRBIG00000027910LSM12100100.000Rhinopithecus_bieti
MGP_PahariEiJ_G0018371Lsm1210083.212ENSRROG00000000537-10083.212Rhinopithecus_roxellana
MGP_PahariEiJ_G0018371Lsm12100100.000ENSRROG00000045530-100100.000Rhinopithecus_roxellana
MGP_PahariEiJ_G0018371Lsm127733.051YHR121W-6133.051Saccharomyces_cerevisiae
MGP_PahariEiJ_G0018371Lsm12100100.000ENSSBOG00000025310LSM12100100.000Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0018371Lsm128194.595ENSSHAG00000014914LSM1210085.143Sarcophilus_harrisii
MGP_PahariEiJ_G0018371Lsm1210076.526ENSSFOG00015020392lsm12a10076.526Scleropages_formosus
MGP_PahariEiJ_G0018371Lsm1210079.343ENSSFOG00015009612lsm1210079.343Scleropages_formosus
MGP_PahariEiJ_G0018371Lsm1210078.404ENSSMAG00000008089lsm12b10078.404Scophthalmus_maximus
MGP_PahariEiJ_G0018371Lsm1210079.343ENSSDUG00000012711lsm12b10079.343Seriola_dumerili
MGP_PahariEiJ_G0018371Lsm1210079.343ENSSLDG00000007404lsm12b10079.343Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0018371Lsm128198.198ENSSARG00000005537LSM1210089.412Sorex_araneus
MGP_PahariEiJ_G0018371Lsm1210093.578ENSSPUG00000011984LSM129987.143Sphenodon_punctatus
MGP_PahariEiJ_G0018371Lsm1210078.873ENSSPAG00000017058lsm12b10078.873Stegastes_partitus
MGP_PahariEiJ_G0018371Lsm12100100.000ENSSSCG00000032394LSM1210091.981Sus_scrofa
MGP_PahariEiJ_G0018371Lsm1210084.545ENSTRUG00000007121lsm12b10077.465Takifugu_rubripes
MGP_PahariEiJ_G0018371Lsm1210084.545ENSTNIG00000014436lsm12b10077.934Tetraodon_nigroviridis
MGP_PahariEiJ_G0018371Lsm1210091.509ENSTBEG00000012523-10091.509Tupaia_belangeri
MGP_PahariEiJ_G0018371Lsm1210093.694ENSTBEG00000012392-10088.679Tupaia_belangeri
MGP_PahariEiJ_G0018371Lsm12100100.000ENSTTRG00000010433LSM1210091.981Tursiops_truncatus
MGP_PahariEiJ_G0018371Lsm12100100.000ENSUAMG00000006313LSM1210091.981Ursus_americanus
MGP_PahariEiJ_G0018371Lsm128198.198ENSUMAG00000012987LSM129087.429Ursus_maritimus
MGP_PahariEiJ_G0018371Lsm1210090.323ENSVPAG00000011145LSM1210086.792Vicugna_pacos
MGP_PahariEiJ_G0018371Lsm12100100.000ENSVVUG00000017581LSM1210091.981Vulpes_vulpes
MGP_PahariEiJ_G0018371Lsm128083.486ENSXETG00000003371lsm125583.486Xenopus_tropicalis
MGP_PahariEiJ_G0018371Lsm1210085.455ENSXCOG00000003994lsm12b10077.465Xiphophorus_couchianus
MGP_PahariEiJ_G0018371Lsm1210085.455ENSXMAG00000020950lsm12b10077.465Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us