EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0018593 (Gene tree)
Gene ID: 110332630
Gene Symbol: Tnrc6c
Alias: 9930033H14Rik
Full Name: trinucleotide repeat containing 6C
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Plus strand
Length: 110499 bases
Position: chr14:84799026-84909524
Accession: 110332630
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0037987	Ago_hook	PF10427.9	3.7e-24	1	1
MGP_PahariEiJ_P0037984	Ago_hook	PF10427.9	5.4e-24	1	1
MGP_PahariEiJ_P0037986	Ago_hook	PF10427.9	5.4e-24	1	1
MGP_PahariEiJ_P0037987	RRM_1	PF00076.22	0.0004	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0037986	-	8850	-	MGP_PahariEiJ_P0037986	1900 (aa)	-	UPI000A30CAAC
MGP_PahariEiJ_T0037987	-	6601	XM_021213924	MGP_PahariEiJ_P0037987	1732 (aa)	XP_021069583	-
MGP_PahariEiJ_T0037984	-	8727	XM_021213923	MGP_PahariEiJ_P0037984	1900 (aa)	XP_021069582	UPI000A30CAAC
MGP_PahariEiJ_T0037985	-	11453	-	-	- (aa)	-	-
MGP_PahariEiJ_T0037988	-	736	-	-	- (aa)	-	-
MGP_PahariEiJ_T0037989	-	1616	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0018593's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0018593's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PahariEiJ_G0018593	Tnrc6c	99	35.317	MGP_PahariEiJ_G0020045	Tnrc6b	96	34.724
MGP_PahariEiJ_G0018593	Tnrc6c	99	40.860	MGP_PahariEiJ_G0013635	Tnrc6a	98	44.414

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0018593	Tnrc6c	100	88.565	ENSG00000078687	TNRC6C	100	91.065	Homo_sapiens
MGP_PahariEiJ_G0018593	Tnrc6c	77	55.000	ENSAPOG00000019749	tnrc6c1	98	49.544	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0018593	Tnrc6c	99	85.865	ENSAMEG00000013756	TNRC6C	99	86.199	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0018593	Tnrc6c	97	50.657	ENSACIG00000008075	tnrc6c1	98	51.880	Amphilophus_citrinellus
MGP_PahariEiJ_G0018593	Tnrc6c	75	68.871	ENSAOCG00000023968	tnrc6c1	99	48.633	Amphiprion_ocellaris
MGP_PahariEiJ_G0018593	Tnrc6c	77	54.494	ENSAPEG00000009020	tnrc6c1	99	48.889	Amphiprion_percula
MGP_PahariEiJ_G0018593	Tnrc6c	100	82.897	ENSAPLG00000005456	TNRC6C	100	82.034	Anas_platyrhynchos
MGP_PahariEiJ_G0018593	Tnrc6c	100	83.746	ENSACAG00000016198	TNRC6C	98	82.656	Anolis_carolinensis
MGP_PahariEiJ_G0018593	Tnrc6c	100	87.998	ENSANAG00000021554	TNRC6C	100	90.705	Aotus_nancymaae
MGP_PahariEiJ_G0018593	Tnrc6c	99	47.043	ENSACLG00000000424	tnrc6c1	98	50.946	Astatotilapia_calliptera
MGP_PahariEiJ_G0018593	Tnrc6c	100	85.722	ENSBTAG00000018658	TNRC6C	100	88.225	Bos_taurus
MGP_PahariEiJ_G0018593	Tnrc6c	100	88.166	ENSCJAG00000019431	TNRC6C	100	90.586	Callithrix_jacchus
MGP_PahariEiJ_G0018593	Tnrc6c	99	88.119	ENSCAFG00000005224	TNRC6C	99	87.617	Canis_familiaris
MGP_PahariEiJ_G0018593	Tnrc6c	99	89.742	ENSCAFG00020006661	TNRC6C	100	89.336	Canis_lupus_dingo
MGP_PahariEiJ_G0018593	Tnrc6c	100	86.413	ENSCHIG00000026004	TNRC6C	100	86.211	Capra_hircus
MGP_PahariEiJ_G0018593	Tnrc6c	97	89.855	ENSTSYG00000005403	TNRC6C	100	89.971	Carlito_syrichta
MGP_PahariEiJ_G0018593	Tnrc6c	100	84.659	ENSCAPG00000007307	TNRC6C	99	85.401	Cavia_aperea
MGP_PahariEiJ_G0018593	Tnrc6c	100	89.631	ENSCPOG00000000467	TNRC6C	100	90.035	Cavia_porcellus
MGP_PahariEiJ_G0018593	Tnrc6c	100	88.559	ENSCCAG00000030524	TNRC6C	100	91.060	Cebus_capucinus
MGP_PahariEiJ_G0018593	Tnrc6c	100	88.503	ENSCATG00000033135	TNRC6C	100	90.941	Cercocebus_atys
MGP_PahariEiJ_G0018593	Tnrc6c	100	91.820	ENSCLAG00000011139	TNRC6C	99	90.962	Chinchilla_lanigera
MGP_PahariEiJ_G0018593	Tnrc6c	99	88.839	ENSCSAG00000005167	TNRC6C	99	88.281	Chlorocebus_sabaeus
MGP_PahariEiJ_G0018593	Tnrc6c	76	90.431	ENSCHOG00000000088	TNRC6C	75	89.694	Choloepus_hoffmanni
MGP_PahariEiJ_G0018593	Tnrc6c	100	86.379	ENSCPBG00000027960	TNRC6C	100	86.509	Chrysemys_picta_bellii
MGP_PahariEiJ_G0018593	Tnrc6c	100	88.334	ENSCANG00000041771	TNRC6C	100	90.764	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0018593	Tnrc6c	100	95.000	ENSCGRG00001022686	Tnrc6c	100	94.675	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0018593	Tnrc6c	100	95.439	ENSCGRG00000018041	Tnrc6c	100	94.675	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0018593	Tnrc6c	99	47.113	ENSCSEG00000012744	tnrc6c1	98	47.723	Cynoglossus_semilaevis
MGP_PahariEiJ_G0018593	Tnrc6c	99	52.834	ENSDARG00000076847	tnrc6c1	99	52.988	Danio_rerio
MGP_PahariEiJ_G0018593	Tnrc6c	100	86.790	ENSDNOG00000003247	TNRC6C	99	84.719	Dasypus_novemcinctus
MGP_PahariEiJ_G0018593	Tnrc6c	100	86.862	ENSDORG00000004558	Tnrc6c	100	87.773	Dipodomys_ordii
MGP_PahariEiJ_G0018593	Tnrc6c	90	82.000	ENSETEG00000005527	TNRC6C	90	82.087	Echinops_telfairi
MGP_PahariEiJ_G0018593	Tnrc6c	97	90.101	ENSEASG00005004799	TNRC6C	100	90.219	Equus_asinus_asinus
MGP_PahariEiJ_G0018593	Tnrc6c	100	89.868	ENSECAG00000012486	TNRC6C	99	89.185	Equus_caballus
MGP_PahariEiJ_G0018593	Tnrc6c	96	87.648	ENSEEUG00000010008	TNRC6C	96	87.648	Erinaceus_europaeus
MGP_PahariEiJ_G0018593	Tnrc6c	100	85.395	ENSFCAG00000028358	TNRC6C	100	88.187	Felis_catus
MGP_PahariEiJ_G0018593	Tnrc6c	97	82.757	ENSFALG00000000848	TNRC6C	100	82.587	Ficedula_albicollis
MGP_PahariEiJ_G0018593	Tnrc6c	100	91.071	ENSFDAG00000010368	TNRC6C	100	91.590	Fukomys_damarensis
MGP_PahariEiJ_G0018593	Tnrc6c	99	47.302	ENSFHEG00000002936	tnrc6c1	99	46.812	Fundulus_heteroclitus
MGP_PahariEiJ_G0018593	Tnrc6c	100	84.741	ENSGALG00000001725	TNRC6C	100	86.603	Gallus_gallus
MGP_PahariEiJ_G0018593	Tnrc6c	99	49.082	ENSGAFG00000019019	tnrc6c1	99	47.913	Gambusia_affinis
MGP_PahariEiJ_G0018593	Tnrc6c	77	53.333	ENSGACG00000012320	tnrc6c1	97	48.093	Gasterosteus_aculeatus
MGP_PahariEiJ_G0018593	Tnrc6c	100	85.698	ENSGAGG00000022043	TNRC6C	99	85.239	Gopherus_agassizii
MGP_PahariEiJ_G0018593	Tnrc6c	100	88.004	ENSGGOG00000011304	TNRC6C	100	90.355	Gorilla_gorilla
MGP_PahariEiJ_G0018593	Tnrc6c	97	50.068	ENSHBUG00000010846	tnrc6c1	98	51.158	Haplochromis_burtoni
MGP_PahariEiJ_G0018593	Tnrc6c	100	91.302	ENSHGLG00000004809	TNRC6C	99	90.329	Heterocephalus_glaber_female
MGP_PahariEiJ_G0018593	Tnrc6c	100	90.596	ENSHGLG00100012597	TNRC6C	99	90.542	Heterocephalus_glaber_male
MGP_PahariEiJ_G0018593	Tnrc6c	99	52.480	ENSIPUG00000000818	tnrc6c1	98	51.611	Ictalurus_punctatus
MGP_PahariEiJ_G0018593	Tnrc6c	100	90.909	ENSSTOG00000009101	TNRC6C	100	91.197	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0018593	Tnrc6c	100	91.264	ENSJJAG00000017055	Tnrc6c	99	90.580	Jaculus_jaculus
MGP_PahariEiJ_G0018593	Tnrc6c	99	47.619	ENSKMAG00000021023	tnrc6c1	97	50.711	Kryptolebias_marmoratus
MGP_PahariEiJ_G0018593	Tnrc6c	100	74.815	ENSLACG00000015283	TNRC6C	100	74.986	Latimeria_chalumnae
MGP_PahariEiJ_G0018593	Tnrc6c	100	56.331	ENSLOCG00000013377	tnrc6c1	99	55.946	Lepisosteus_oculatus
MGP_PahariEiJ_G0018593	Tnrc6c	100	89.335	ENSLAFG00000011122	TNRC6C	99	89.102	Loxodonta_africana
MGP_PahariEiJ_G0018593	Tnrc6c	100	88.559	ENSMFAG00000043943	TNRC6C	100	91.001	Macaca_fascicularis
MGP_PahariEiJ_G0018593	Tnrc6c	100	88.958	ENSMMUG00000011924	TNRC6C	100	91.001	Macaca_mulatta
MGP_PahariEiJ_G0018593	Tnrc6c	100	88.503	ENSMNEG00000030405	TNRC6C	100	90.941	Macaca_nemestrina
MGP_PahariEiJ_G0018593	Tnrc6c	100	88.559	ENSMLEG00000033436	TNRC6C	100	91.001	Mandrillus_leucophaeus
MGP_PahariEiJ_G0018593	Tnrc6c	95	52.643	ENSMAMG00000023613	tnrc6c1	97	50.144	Mastacembelus_armatus
MGP_PahariEiJ_G0018593	Tnrc6c	97	49.932	ENSMZEG00005010920	tnrc6c1	98	50.946	Maylandia_zebra
MGP_PahariEiJ_G0018593	Tnrc6c	100	77.392	ENSMGAG00000003906	TNRC6C	100	77.218	Meleagris_gallopavo
MGP_PahariEiJ_G0018593	Tnrc6c	97	94.615	ENSMAUG00000021618	Tnrc6c	100	95.089	Mesocricetus_auratus
MGP_PahariEiJ_G0018593	Tnrc6c	100	89.456	ENSMICG00000003952	TNRC6C	100	91.829	Microcebus_murinus
MGP_PahariEiJ_G0018593	Tnrc6c	100	96.824	ENSMOCG00000015879	Tnrc6c	100	96.824	Microtus_ochrogaster
MGP_PahariEiJ_G0018593	Tnrc6c	76	55.299	ENSMMOG00000005203	tnrc6c1	100	49.916	Mola_mola
MGP_PahariEiJ_G0018593	Tnrc6c	100	85.166	ENSMODG00000001785	TNRC6C	99	84.599	Monodelphis_domestica
MGP_PahariEiJ_G0018593	Tnrc6c	100	98.961	MGP_CAROLIEiJ_G0017465	Tnrc6c	100	98.961	Mus_caroli
MGP_PahariEiJ_G0018593	Tnrc6c	100	98.672	ENSMUSG00000025571	Tnrc6c	100	98.672	Mus_musculus
MGP_PahariEiJ_G0018593	Tnrc6c	100	98.730	MGP_SPRETEiJ_G0018309	Tnrc6c	100	98.730	Mus_spretus
MGP_PahariEiJ_G0018593	Tnrc6c	99	85.923	ENSMPUG00000013348	TNRC6C	98	85.380	Mustela_putorius_furo
MGP_PahariEiJ_G0018593	Tnrc6c	100	81.965	ENSMLUG00000014431	TNRC6C	98	81.095	Myotis_lucifugus
MGP_PahariEiJ_G0018593	Tnrc6c	100	93.851	ENSNGAG00000012203	Tnrc6c	99	94.033	Nannospalax_galili
MGP_PahariEiJ_G0018593	Tnrc6c	99	47.591	ENSNBRG00000005344	tnrc6c1	98	51.567	Neolamprologus_brichardi
MGP_PahariEiJ_G0018593	Tnrc6c	99	85.971	ENSNLEG00000000047	TNRC6C	99	86.304	Nomascus_leucogenys
MGP_PahariEiJ_G0018593	Tnrc6c	98	79.812	ENSMEUG00000005104	TNRC6C	100	79.812	Notamacropus_eugenii
MGP_PahariEiJ_G0018593	Tnrc6c	97	91.340	ENSODEG00000012499	TNRC6C	100	91.637	Octodon_degus
MGP_PahariEiJ_G0018593	Tnrc6c	87	52.921	ENSONIG00000002210	tnrc6c1	96	53.883	Oreochromis_niloticus
MGP_PahariEiJ_G0018593	Tnrc6c	100	82.979	ENSOANG00000009758	-	92	82.979	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0018593	Tnrc6c	85	78.907	ENSOCUG00000006122	TNRC6C	95	76.815	Oryctolagus_cuniculus
MGP_PahariEiJ_G0018593	Tnrc6c	99	47.493	ENSORLG00000009837	tnrc6c1	100	67.286	Oryzias_latipes
MGP_PahariEiJ_G0018593	Tnrc6c	99	46.394	ENSORLG00020016510	tnrc6c1	100	48.251	Oryzias_latipes_hni
MGP_PahariEiJ_G0018593	Tnrc6c	81	42.609	ENSORLG00015000171	tnrc6c1	98	43.607	Oryzias_latipes_hsok
MGP_PahariEiJ_G0018593	Tnrc6c	99	47.953	ENSOMEG00000000357	tnrc6c1	99	47.709	Oryzias_melastigma
MGP_PahariEiJ_G0018593	Tnrc6c	97	88.870	ENSOGAG00000007197	TNRC6C	100	88.986	Otolemur_garnettii
MGP_PahariEiJ_G0018593	Tnrc6c	96	82.460	ENSOARG00000006041	TNRC6C	97	82.459	Ovis_aries
MGP_PahariEiJ_G0018593	Tnrc6c	100	88.503	ENSPPAG00000027160	TNRC6C	100	90.941	Pan_paniscus
MGP_PahariEiJ_G0018593	Tnrc6c	100	85.506	ENSPPRG00000018881	TNRC6C	100	88.305	Panthera_pardus
MGP_PahariEiJ_G0018593	Tnrc6c	90	83.513	ENSPTIG00000008791	TNRC6C	86	83.513	Panthera_tigris_altaica
MGP_PahariEiJ_G0018593	Tnrc6c	100	88.503	ENSPTRG00000009699	TNRC6C	100	90.941	Pan_troglodytes
MGP_PahariEiJ_G0018593	Tnrc6c	100	88.559	ENSPANG00000019994	TNRC6C	100	91.163	Papio_anubis
MGP_PahariEiJ_G0018593	Tnrc6c	90	62.108	ENSPKIG00000005428	tnrc6c1	98	51.430	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0018593	Tnrc6c	100	84.195	ENSPSIG00000018069	TNRC6C	100	83.966	Pelodiscus_sinensis
MGP_PahariEiJ_G0018593	Tnrc6c	63	54.839	ENSPMGG00000022911	tnrc6c1	97	63.968	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0018593	Tnrc6c	100	96.034	ENSPEMG00000009785	Tnrc6c	99	96.058	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0018593	Tnrc6c	56	83.522	ENSPCIG00000017421	-	99	83.522	Phascolarctos_cinereus
MGP_PahariEiJ_G0018593	Tnrc6c	99	49.217	ENSPFOG00000012560	tnrc6c1	97	54.298	Poecilia_formosa
MGP_PahariEiJ_G0018593	Tnrc6c	94	50.371	ENSPLAG00000021055	tnrc6c1	97	49.914	Poecilia_latipinna
MGP_PahariEiJ_G0018593	Tnrc6c	100	89.014	ENSPPYG00000008679	TNRC6C	98	88.594	Pongo_abelii
MGP_PahariEiJ_G0018593	Tnrc6c	93	93.128	ENSPCAG00000012510	TNRC6C	90	93.128	Procavia_capensis
MGP_PahariEiJ_G0018593	Tnrc6c	97	92.303	ENSPCOG00000021451	TNRC6C	100	92.362	Propithecus_coquereli
MGP_PahariEiJ_G0018593	Tnrc6c	96	89.831	ENSPVAG00000002008	TNRC6C	95	89.831	Pteropus_vampyrus
MGP_PahariEiJ_G0018593	Tnrc6c	99	46.656	ENSPNYG00000014477	tnrc6c1	99	49.704	Pundamilia_nyererei
MGP_PahariEiJ_G0018593	Tnrc6c	97	97.743	ENSRNOG00000022395	Tnrc6c	100	97.743	Rattus_norvegicus
MGP_PahariEiJ_G0018593	Tnrc6c	100	88.559	ENSRBIG00000027777	TNRC6C	100	91.001	Rhinopithecus_bieti
MGP_PahariEiJ_G0018593	Tnrc6c	100	88.615	ENSRROG00000042912	TNRC6C	100	91.060	Rhinopithecus_roxellana
MGP_PahariEiJ_G0018593	Tnrc6c	100	88.295	ENSSBOG00000023981	TNRC6C	100	88.522	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0018593	Tnrc6c	51	86.147	ENSSHAG00000018330	-	100	85.498	Sarcophilus_harrisii
MGP_PahariEiJ_G0018593	Tnrc6c	65	56.103	ENSSFOG00015004735	-	99	60.313	Scleropages_formosus
MGP_PahariEiJ_G0018593	Tnrc6c	99	47.824	ENSSMAG00000012761	tnrc6c1	99	50.463	Scophthalmus_maximus
MGP_PahariEiJ_G0018593	Tnrc6c	99	49.806	ENSSDUG00000002366	tnrc6c1	98	50.163	Seriola_dumerili
MGP_PahariEiJ_G0018593	Tnrc6c	91	49.793	ENSSLDG00000025613	tnrc6c1	97	50.285	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0018593	Tnrc6c	91	90.086	ENSSARG00000006816	TNRC6C	91	89.868	Sorex_araneus
MGP_PahariEiJ_G0018593	Tnrc6c	80	82.292	ENSSPUG00000007341	TNRC6C	98	82.500	Sphenodon_punctatus
MGP_PahariEiJ_G0018593	Tnrc6c	76	53.857	ENSSPAG00000014977	tnrc6c1	98	47.985	Stegastes_partitus
MGP_PahariEiJ_G0018593	Tnrc6c	97	84.707	ENSSSCG00000034373	TNRC6C	100	84.944	Sus_scrofa
MGP_PahariEiJ_G0018593	Tnrc6c	100	86.789	ENSTGUG00000007733	TNRC6C	100	86.674	Taeniopygia_guttata
MGP_PahariEiJ_G0018593	Tnrc6c	77	52.774	ENSTRUG00000011685	tnrc6c1	100	48.813	Takifugu_rubripes
MGP_PahariEiJ_G0018593	Tnrc6c	95	54.690	ENSTNIG00000005273	tnrc6c1	100	59.961	Tetraodon_nigroviridis
MGP_PahariEiJ_G0018593	Tnrc6c	62	90.625	ENSTBEG00000005046	TNRC6C	99	81.866	Tupaia_belangeri
MGP_PahariEiJ_G0018593	Tnrc6c	100	89.144	ENSTTRG00000010828	TNRC6C	99	89.316	Tursiops_truncatus
MGP_PahariEiJ_G0018593	Tnrc6c	99	88.016	ENSUMAG00000013614	TNRC6C	99	87.985	Ursus_maritimus
MGP_PahariEiJ_G0018593	Tnrc6c	50	80.068	ENSVPAG00000006765	-	99	80.298	Vicugna_pacos
MGP_PahariEiJ_G0018593	Tnrc6c	97	90.521	ENSVVUG00000015268	TNRC6C	100	90.699	Vulpes_vulpes
MGP_PahariEiJ_G0018593	Tnrc6c	97	74.018	ENSXETG00000019470	tnrc6c	100	73.502	Xenopus_tropicalis
MGP_PahariEiJ_G0018593	Tnrc6c	99	50.056	ENSXMAG00000025971	tnrc6c1	99	49.553	Xiphophorus_maculatus