EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0019217 (Gene tree)
Gene ID: 110333635
Gene Symbol: Upf2
Alias: -
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Plus strand
Length: 105236 bases
Position: chr16:3397432-3502667
Accession: 110333635
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0040019	Upf2	PF04050.14	1.8e-32	1	1
MGP_PahariEiJ_P0040020	Upf2	PF04050.14	5e-32	1	1
MGP_PahariEiJ_P0040019	MIF4G	PF02854.19	1.4e-76	1	3
MGP_PahariEiJ_P0040019	MIF4G	PF02854.19	1.4e-76	2	3
MGP_PahariEiJ_P0040019	MIF4G	PF02854.19	1.4e-76	3	3
MGP_PahariEiJ_P0040020	MIF4G	PF02854.19	3.6e-44	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0040020	-	2824	-	MGP_PahariEiJ_P0040020	522 (aa)	-	-
MGP_PahariEiJ_T0040021	-	546	-	-	- (aa)	-	-
MGP_PahariEiJ_T0040019	-	5172	XM_021215285	MGP_PahariEiJ_P0040019	1269 (aa)	XP_021070944	UPI000A311186

Gene Model

Click here to download MGP_PahariEiJ_G0019217's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0019217's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0019217	Upf2	100	97.524	ENSG00000151461	UPF2	100	96.541	Homo_sapiens
MGP_PahariEiJ_G0019217	Upf2	99	80.418	ENSAPOG00000015837	UPF2	100	78.605	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0019217	Upf2	100	97.143	ENSAMEG00000004586	UPF2	100	97.010	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0019217	Upf2	99	83.712	ENSACIG00000018078	UPF2	100	82.408	Amphilophus_citrinellus
MGP_PahariEiJ_G0019217	Upf2	100	83.396	ENSAOCG00000016766	UPF2	100	82.761	Amphiprion_ocellaris
MGP_PahariEiJ_G0019217	Upf2	100	83.396	ENSAPEG00000019084	UPF2	100	82.839	Amphiprion_percula
MGP_PahariEiJ_G0019217	Upf2	100	82.959	ENSATEG00000021677	UPF2	99	82.632	Anabas_testudineus
MGP_PahariEiJ_G0019217	Upf2	100	89.101	ENSAPLG00000010287	UPF2	90	91.130	Anas_platyrhynchos
MGP_PahariEiJ_G0019217	Upf2	100	94.095	ENSACAG00000009259	UPF2	100	91.109	Anolis_carolinensis
MGP_PahariEiJ_G0019217	Upf2	99	96.941	ENSANAG00000028451	UPF2	99	85.051	Aotus_nancymaae
MGP_PahariEiJ_G0019217	Upf2	100	83.962	ENSACLG00000012696	UPF2	100	82.670	Astatotilapia_calliptera
MGP_PahariEiJ_G0019217	Upf2	99	84.190	ENSAMXG00000013700	UPF2	99	83.555	Astyanax_mexicanus
MGP_PahariEiJ_G0019217	Upf2	100	97.333	ENSBTAG00000000288	UPF2	100	96.932	Bos_taurus
MGP_PahariEiJ_G0019217	Upf2	100	97.143	ENSCJAG00000020685	UPF2	100	96.541	Callithrix_jacchus
MGP_PahariEiJ_G0019217	Upf2	100	97.333	ENSCAFG00000004839	UPF2	100	97.168	Canis_familiaris
MGP_PahariEiJ_G0019217	Upf2	97	99.507	ENSCAFG00020005882	UPF2	100	95.189	Canis_lupus_dingo
MGP_PahariEiJ_G0019217	Upf2	100	97.333	ENSCHIG00000020359	UPF2	100	97.010	Capra_hircus
MGP_PahariEiJ_G0019217	Upf2	100	97.143	ENSTSYG00000000935	UPF2	100	96.538	Carlito_syrichta
MGP_PahariEiJ_G0019217	Upf2	99	81.609	ENSCAPG00000016658	UPF2	95	85.616	Cavia_aperea
MGP_PahariEiJ_G0019217	Upf2	99	96.558	ENSCPOG00000008809	UPF2	100	94.532	Cavia_porcellus
MGP_PahariEiJ_G0019217	Upf2	100	91.038	ENSCCAG00000035991	UPF2	100	90.165	Cebus_capucinus
MGP_PahariEiJ_G0019217	Upf2	100	97.524	ENSCATG00000032679	UPF2	100	96.777	Cercocebus_atys
MGP_PahariEiJ_G0019217	Upf2	100	97.089	ENSCLAG00000011434	UPF2	100	97.089	Chinchilla_lanigera
MGP_PahariEiJ_G0019217	Upf2	100	97.524	ENSCSAG00000013372	UPF2	100	96.777	Chlorocebus_sabaeus
MGP_PahariEiJ_G0019217	Upf2	88	99.507	ENSCHOG00000000422	UPF2	89	98.661	Choloepus_hoffmanni
MGP_PahariEiJ_G0019217	Upf2	99	95.602	ENSCPBG00000027823	UPF2	100	92.199	Chrysemys_picta_bellii
MGP_PahariEiJ_G0019217	Upf2	99	49.053	ENSCSAVG00000007772	-	99	48.039	Ciona_savignyi
MGP_PahariEiJ_G0019217	Upf2	99	91.009	ENSCANG00000040396	UPF2	100	90.852	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0019217	Upf2	100	98.582	ENSCGRG00001019347	Upf2	100	98.582	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0019217	Upf2	100	98.582	ENSCGRG00000017993	Upf2	100	98.582	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0019217	Upf2	100	80.114	ENSCSEG00000003520	UPF2	99	78.155	Cynoglossus_semilaevis
MGP_PahariEiJ_G0019217	Upf2	100	82.863	ENSCVAG00000006167	UPF2	100	81.997	Cyprinodon_variegatus
MGP_PahariEiJ_G0019217	Upf2	58	79.538	ENSDARG00000111388	CABZ01068469.1	88	81.439	Danio_rerio
MGP_PahariEiJ_G0019217	Upf2	100	97.168	ENSDNOG00000018160	UPF2	100	97.168	Dasypus_novemcinctus
MGP_PahariEiJ_G0019217	Upf2	100	97.402	ENSDORG00000002478	Upf2	100	97.402	Dipodomys_ordii
MGP_PahariEiJ_G0019217	Upf2	72	100.000	ENSETEG00000011583	-	66	100.000	Echinops_telfairi
MGP_PahariEiJ_G0019217	Upf2	93	77.273	ENSEBUG00000012448	-	87	72.483	Eptatretus_burgeri
MGP_PahariEiJ_G0019217	Upf2	100	97.524	ENSEASG00005019274	UPF2	100	97.089	Equus_asinus_asinus
MGP_PahariEiJ_G0019217	Upf2	100	97.524	ENSECAG00000017022	UPF2	100	97.168	Equus_caballus
MGP_PahariEiJ_G0019217	Upf2	82	91.374	ENSEEUG00000007819	UPF2	82	91.374	Erinaceus_europaeus
MGP_PahariEiJ_G0019217	Upf2	99	84.030	ENSELUG00000012014	UPF2	100	82.023	Esox_lucius
MGP_PahariEiJ_G0019217	Upf2	100	98.895	ENSFCAG00000005785	UPF2	100	96.853	Felis_catus
MGP_PahariEiJ_G0019217	Upf2	100	94.476	ENSFALG00000001889	UPF2	98	93.076	Ficedula_albicollis
MGP_PahariEiJ_G0019217	Upf2	100	96.947	ENSFDAG00000014348	UPF2	100	96.929	Fukomys_damarensis
MGP_PahariEiJ_G0019217	Upf2	100	83.585	ENSFHEG00000009826	UPF2	100	82.283	Fundulus_heteroclitus
MGP_PahariEiJ_G0019217	Upf2	99	83.556	ENSGMOG00000005557	UPF2	91	83.448	Gadus_morhua
MGP_PahariEiJ_G0019217	Upf2	100	96.000	ENSGALG00000033772	UPF2	100	93.396	Gallus_gallus
MGP_PahariEiJ_G0019217	Upf2	100	83.208	ENSGAFG00000020867	UPF2	100	81.343	Gambusia_affinis
MGP_PahariEiJ_G0019217	Upf2	99	83.681	ENSGACG00000001080	UPF2	100	82.330	Gasterosteus_aculeatus
MGP_PahariEiJ_G0019217	Upf2	100	95.429	ENSGAGG00000002700	UPF2	100	92.762	Gopherus_agassizii
MGP_PahariEiJ_G0019217	Upf2	100	97.524	ENSGGOG00000001479	UPF2	100	96.541	Gorilla_gorilla
MGP_PahariEiJ_G0019217	Upf2	100	83.585	ENSHBUG00000004249	UPF2	100	82.643	Haplochromis_burtoni
MGP_PahariEiJ_G0019217	Upf2	99	88.168	ENSHGLG00000003822	-	99	83.846	Heterocephalus_glaber_female
MGP_PahariEiJ_G0019217	Upf2	100	96.853	ENSHGLG00000015176	-	100	96.853	Heterocephalus_glaber_female
MGP_PahariEiJ_G0019217	Upf2	99	96.360	ENSHGLG00100010036	UPF2	100	93.297	Heterocephalus_glaber_male
MGP_PahariEiJ_G0019217	Upf2	100	83.019	ENSHCOG00000004025	UPF2	99	80.575	Hippocampus_comes
MGP_PahariEiJ_G0019217	Upf2	100	82.987	ENSIPUG00000015524	UPF2	100	82.734	Ictalurus_punctatus
MGP_PahariEiJ_G0019217	Upf2	100	97.559	ENSSTOG00000013075	UPF2	100	97.559	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0019217	Upf2	100	96.693	ENSJJAG00000004913	Upf2	100	96.693	Jaculus_jaculus
MGP_PahariEiJ_G0019217	Upf2	100	82.617	ENSKMAG00000001071	UPF2	100	82.104	Kryptolebias_marmoratus
MGP_PahariEiJ_G0019217	Upf2	100	83.895	ENSLBEG00000016394	-	99	82.788	Labrus_bergylta
MGP_PahariEiJ_G0019217	Upf2	80	82.596	ENSLBEG00000000728	-	93	82.596	Labrus_bergylta
MGP_PahariEiJ_G0019217	Upf2	99	79.373	ENSLACG00000015945	UPF2	100	79.294	Latimeria_chalumnae
MGP_PahariEiJ_G0019217	Upf2	100	86.981	ENSLOCG00000015698	UPF2	100	85.894	Lepisosteus_oculatus
MGP_PahariEiJ_G0019217	Upf2	100	97.524	ENSMFAG00000043865	UPF2	100	96.698	Macaca_fascicularis
MGP_PahariEiJ_G0019217	Upf2	100	97.524	ENSMMUG00000008241	UPF2	100	96.698	Macaca_mulatta
MGP_PahariEiJ_G0019217	Upf2	81	96.488	ENSMNEG00000008062	UPF2	100	96.488	Macaca_nemestrina
MGP_PahariEiJ_G0019217	Upf2	99	94.053	ENSMLEG00000036120	UPF2	100	97.585	Mandrillus_leucophaeus
MGP_PahariEiJ_G0019217	Upf2	100	83.146	ENSMAMG00000018276	UPF2	100	82.477	Mastacembelus_armatus
MGP_PahariEiJ_G0019217	Upf2	100	83.962	ENSMZEG00005021595	UPF2	100	82.670	Maylandia_zebra
MGP_PahariEiJ_G0019217	Upf2	99	95.802	ENSMGAG00000004573	UPF2	99	92.756	Meleagris_gallopavo
MGP_PahariEiJ_G0019217	Upf2	100	98.473	ENSMAUG00000016512	Upf2	100	96.217	Mesocricetus_auratus
MGP_PahariEiJ_G0019217	Upf2	95	98.469	ENSMICG00000001716	UPF2	100	91.798	Microcebus_murinus
MGP_PahariEiJ_G0019217	Upf2	100	98.664	ENSMOCG00000008263	Upf2	100	98.345	Microtus_ochrogaster
MGP_PahariEiJ_G0019217	Upf2	99	80.453	ENSMMOG00000006528	UPF2	100	80.392	Mola_mola
MGP_PahariEiJ_G0019217	Upf2	100	94.335	ENSMODG00000016794	UPF2	100	94.807	Monodelphis_domestica
MGP_PahariEiJ_G0019217	Upf2	99	82.732	ENSMALG00000002663	UPF2	100	82.537	Monopterus_albus
MGP_PahariEiJ_G0019217	Upf2	100	98.659	MGP_CAROLIEiJ_G0023157	Upf2	100	98.659	Mus_caroli
MGP_PahariEiJ_G0019217	Upf2	100	99.617	ENSMUSG00000043241	Upf2	100	98.739	Mus_musculus
MGP_PahariEiJ_G0019217	Upf2	100	99.617	MGP_SPRETEiJ_G0024075	Upf2	100	99.617	Mus_spretus
MGP_PahariEiJ_G0019217	Upf2	100	97.524	ENSMPUG00000001064	UPF2	100	97.168	Mustela_putorius_furo
MGP_PahariEiJ_G0019217	Upf2	99	97.706	ENSMLUG00000000228	UPF2	100	96.779	Myotis_lucifugus
MGP_PahariEiJ_G0019217	Upf2	100	83.962	ENSNBRG00000013629	UPF2	100	82.670	Neolamprologus_brichardi
MGP_PahariEiJ_G0019217	Upf2	100	97.333	ENSNLEG00000012058	UPF2	100	96.698	Nomascus_leucogenys
MGP_PahariEiJ_G0019217	Upf2	61	97.126	ENSMEUG00000002180	-	59	97.409	Notamacropus_eugenii
MGP_PahariEiJ_G0019217	Upf2	84	99.187	ENSOPRG00000006801	-	82	99.296	Ochotona_princeps
MGP_PahariEiJ_G0019217	Upf2	100	96.853	ENSODEG00000001290	UPF2	100	96.853	Octodon_degus
MGP_PahariEiJ_G0019217	Upf2	100	84.151	ENSONIG00000017991	UPF2	100	82.748	Oreochromis_niloticus
MGP_PahariEiJ_G0019217	Upf2	57	95.333	ENSOANG00000019744	-	93	96.383	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0019217	Upf2	99	96.558	ENSOCUG00000006230	UPF2	100	95.455	Oryctolagus_cuniculus
MGP_PahariEiJ_G0019217	Upf2	100	82.772	ENSORLG00000017189	UPF2	100	81.967	Oryzias_latipes
MGP_PahariEiJ_G0019217	Upf2	100	82.959	ENSORLG00020005969	UPF2	100	81.967	Oryzias_latipes_hni
MGP_PahariEiJ_G0019217	Upf2	100	82.959	ENSORLG00015005713	UPF2	100	81.967	Oryzias_latipes_hsok
MGP_PahariEiJ_G0019217	Upf2	99	78.081	ENSOMEG00000023420	UPF2	98	79.046	Oryzias_melastigma
MGP_PahariEiJ_G0019217	Upf2	100	97.333	ENSOGAG00000005796	UPF2	100	97.325	Otolemur_garnettii
MGP_PahariEiJ_G0019217	Upf2	100	96.964	ENSOARG00000014587	UPF2	100	96.858	Ovis_aries
MGP_PahariEiJ_G0019217	Upf2	99	93.192	ENSPPAG00000037953	UPF2	100	93.853	Pan_paniscus
MGP_PahariEiJ_G0019217	Upf2	100	96.952	ENSPPRG00000000690	UPF2	100	96.853	Panthera_pardus
MGP_PahariEiJ_G0019217	Upf2	100	96.952	ENSPTIG00000008867	UPF2	100	96.853	Panthera_tigris_altaica
MGP_PahariEiJ_G0019217	Upf2	100	97.524	ENSPTRG00000002291	UPF2	100	96.541	Pan_troglodytes
MGP_PahariEiJ_G0019217	Upf2	100	97.524	ENSPANG00000023399	UPF2	100	96.698	Papio_anubis
MGP_PahariEiJ_G0019217	Upf2	100	82.453	ENSPKIG00000025502	UPF2	100	81.187	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0019217	Upf2	59	91.501	ENSPSIG00000015158	UPF2	95	91.501	Pelodiscus_sinensis
MGP_PahariEiJ_G0019217	Upf2	99	82.163	ENSPMGG00000005259	UPF2	100	80.110	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0019217	Upf2	93	98.251	ENSPEMG00000015731	Upf2	99	98.251	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0019217	Upf2	100	94.095	ENSPCIG00000006656	UPF2	100	94.493	Phascolarctos_cinereus
MGP_PahariEiJ_G0019217	Upf2	100	83.396	ENSPFOG00000017118	UPF2	100	81.811	Poecilia_formosa
MGP_PahariEiJ_G0019217	Upf2	100	83.396	ENSPLAG00000005094	UPF2	100	81.811	Poecilia_latipinna
MGP_PahariEiJ_G0019217	Upf2	100	83.396	ENSPMEG00000017009	UPF2	100	81.811	Poecilia_mexicana
MGP_PahariEiJ_G0019217	Upf2	99	82.857	ENSPREG00000021880	UPF2	100	81.897	Poecilia_reticulata
MGP_PahariEiJ_G0019217	Upf2	100	97.333	ENSPPYG00000002089	-	100	97.608	Pongo_abelii
MGP_PahariEiJ_G0019217	Upf2	92	93.776	ENSPCAG00000000684	UPF2	100	82.455	Procavia_capensis
MGP_PahariEiJ_G0019217	Upf2	99	93.927	ENSPCOG00000021656	UPF2	100	94.479	Propithecus_coquereli
MGP_PahariEiJ_G0019217	Upf2	100	97.524	ENSPVAG00000017286	UPF2	100	89.465	Pteropus_vampyrus
MGP_PahariEiJ_G0019217	Upf2	99	83.902	ENSPNYG00000017096	UPF2	100	80.219	Pundamilia_nyererei
MGP_PahariEiJ_G0019217	Upf2	100	83.997	ENSPNAG00000009357	UPF2	100	84.231	Pygocentrus_nattereri
MGP_PahariEiJ_G0019217	Upf2	99	92.767	ENSRNOG00000023593	Upf2	100	100.000	Rattus_norvegicus
MGP_PahariEiJ_G0019217	Upf2	99	97.701	ENSRBIG00000037780	UPF2	100	95.899	Rhinopithecus_bieti
MGP_PahariEiJ_G0019217	Upf2	100	97.710	ENSRROG00000043547	UPF2	100	96.774	Rhinopithecus_roxellana
MGP_PahariEiJ_G0019217	Upf2	100	97.519	ENSSBOG00000020012	UPF2	100	96.538	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0019217	Upf2	100	83.962	ENSSFOG00015023788	upf2	100	82.568	Scleropages_formosus
MGP_PahariEiJ_G0019217	Upf2	100	84.053	ENSSMAG00000007637	UPF2	100	79.147	Scophthalmus_maximus
MGP_PahariEiJ_G0019217	Upf2	100	83.774	ENSSDUG00000017244	UPF2	99	82.995	Seriola_dumerili
MGP_PahariEiJ_G0019217	Upf2	99	81.333	ENSSLDG00000016866	UPF2	82	84.267	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0019217	Upf2	100	95.810	ENSSARG00000008615	UPF2	100	94.729	Sorex_araneus
MGP_PahariEiJ_G0019217	Upf2	99	92.176	ENSSPUG00000014544	UPF2	99	89.370	Sphenodon_punctatus
MGP_PahariEiJ_G0019217	Upf2	100	97.714	ENSSSCG00000011117	-	100	97.583	Sus_scrofa
MGP_PahariEiJ_G0019217	Upf2	99	96.169	ENSTGUG00000002163	-	100	92.981	Taeniopygia_guttata
MGP_PahariEiJ_G0019217	Upf2	75	94.388	ENSTGUG00000015714	-	100	94.898	Taeniopygia_guttata
MGP_PahariEiJ_G0019217	Upf2	100	83.146	ENSTRUG00000007519	UPF2	99	82.137	Takifugu_rubripes
MGP_PahariEiJ_G0019217	Upf2	100	81.903	ENSTNIG00000004453	UPF2	95	83.731	Tetraodon_nigroviridis
MGP_PahariEiJ_G0019217	Upf2	93	90.076	ENSTBEG00000012679	UPF2	93	90.076	Tupaia_belangeri
MGP_PahariEiJ_G0019217	Upf2	100	97.524	ENSTTRG00000016388	UPF2	100	96.774	Tursiops_truncatus
MGP_PahariEiJ_G0019217	Upf2	95	99.306	ENSUAMG00000023560	UPF2	100	97.067	Ursus_americanus
MGP_PahariEiJ_G0019217	Upf2	100	97.333	ENSUMAG00000012953	UPF2	95	97.010	Ursus_maritimus
MGP_PahariEiJ_G0019217	Upf2	85	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
MGP_PahariEiJ_G0019217	Upf2	100	97.333	ENSVVUG00000006166	UPF2	100	97.089	Vulpes_vulpes
MGP_PahariEiJ_G0019217	Upf2	100	87.524	ENSXETG00000033103	UPF2	91	88.841	Xenopus_tropicalis
MGP_PahariEiJ_G0019217	Upf2	99	82.955	ENSXCOG00000011604	UPF2	100	81.470	Xiphophorus_couchianus
MGP_PahariEiJ_G0019217	Upf2	100	83.019	ENSXMAG00000017209	UPF2	100	81.499	Xiphophorus_maculatus