EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0019266 (Gene tree)
Gene ID: 110333782
Gene Symbol: Larp4b
Alias: D13Wsu64e|Larp5
Full Name: La ribonucleoprotein domain family member 4B
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Plus strand
Length: 81440 bases
Position: chr16:13958709-14040148
Accession: 110333782
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0040244	La	PF05383.17	3.5e-14	1	1
MGP_PahariEiJ_P0040242	La	PF05383.17	3.8e-14	1	1
MGP_PahariEiJ_P0040241	La	PF05383.17	4.2e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0040248	-	4486	-	-	- (aa)	-	-
MGP_PahariEiJ_T0040243	-	540	-	MGP_PahariEiJ_P0040243	36 (aa)	-	UPI00053BD835
MGP_PahariEiJ_T0040242	-	2652	-	MGP_PahariEiJ_P0040242	661 (aa)	-	-
MGP_PahariEiJ_T0040241	-	2719	XM_021215490	MGP_PahariEiJ_P0040241	739 (aa)	XP_021071149	UPI000A3144AA
MGP_PahariEiJ_T0040247	-	398	-	-	- (aa)	-	-
MGP_PahariEiJ_T0040246	-	385	-	-	- (aa)	-	-
MGP_PahariEiJ_T0040245	-	8648	-	MGP_PahariEiJ_P0040245	1711 (aa)	-	-
MGP_PahariEiJ_T0040244	-	5758	-	MGP_PahariEiJ_P0040244	655 (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0019266's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0019266's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PahariEiJ_G0019266	Larp4b	89	47.150	MGP_PahariEiJ_G0020284	Larp4	94	47.520

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0019266	Larp4b	100	87.821	ENSG00000107929	LARP4B	100	87.821	Homo_sapiens
MGP_PahariEiJ_G0019266	Larp4b	89	62.395	ENSAPOG00000020531	LARP4B	100	55.701	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0019266	Larp4b	100	85.135	ENSAMEG00000001810	LARP4B	100	85.135	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0019266	Larp4b	86	61.313	ENSAOCG00000007887	-	79	84.768	Amphiprion_ocellaris
MGP_PahariEiJ_G0019266	Larp4b	93	58.345	ENSAPEG00000002512	LARP4B	96	57.254	Amphiprion_percula
MGP_PahariEiJ_G0019266	Larp4b	100	60.606	ENSATEG00000012614	LARP4B	100	55.486	Anabas_testudineus
MGP_PahariEiJ_G0019266	Larp4b	100	78.510	ENSAPLG00000003813	LARP4B	98	76.298	Anas_platyrhynchos
MGP_PahariEiJ_G0019266	Larp4b	100	77.381	ENSACAG00000002858	LARP4B	100	74.400	Anolis_carolinensis
MGP_PahariEiJ_G0019266	Larp4b	100	87.415	ENSANAG00000007531	-	100	87.415	Aotus_nancymaae
MGP_PahariEiJ_G0019266	Larp4b	100	62.735	ENSACLG00000026356	LARP4B	100	57.071	Astatotilapia_calliptera
MGP_PahariEiJ_G0019266	Larp4b	95	58.314	ENSAMXG00000003335	larp4b	97	51.705	Astyanax_mexicanus
MGP_PahariEiJ_G0019266	Larp4b	100	82.075	ENSBTAG00000013899	LARP4B	100	82.075	Bos_taurus
MGP_PahariEiJ_G0019266	Larp4b	100	86.739	ENSCJAG00000018434	LARP4B	100	86.739	Callithrix_jacchus
MGP_PahariEiJ_G0019266	Larp4b	100	88.204	ENSCAFG00020004209	LARP4B	100	85.946	Canis_lupus_dingo
MGP_PahariEiJ_G0019266	Larp4b	100	81.671	ENSCHIG00000013543	LARP4B	100	81.671	Capra_hircus
MGP_PahariEiJ_G0019266	Larp4b	81	89.916	ENSTSYG00000002568	LARP4B	100	89.916	Carlito_syrichta
MGP_PahariEiJ_G0019266	Larp4b	96	82.812	ENSCAPG00000009725	LARP4B	97	78.933	Cavia_aperea
MGP_PahariEiJ_G0019266	Larp4b	100	91.727	ENSCPOG00000009375	LARP4B	100	90.392	Cavia_porcellus
MGP_PahariEiJ_G0019266	Larp4b	100	87.551	ENSCCAG00000024869	LARP4B	100	87.551	Cebus_capucinus
MGP_PahariEiJ_G0019266	Larp4b	100	88.092	ENSCATG00000019750	LARP4B	100	88.092	Cercocebus_atys
MGP_PahariEiJ_G0019266	Larp4b	100	92.233	ENSCLAG00000011570	LARP4B	100	89.595	Chinchilla_lanigera
MGP_PahariEiJ_G0019266	Larp4b	66	89.516	ENSCHOG00000007831	-	66	89.516	Choloepus_hoffmanni
MGP_PahariEiJ_G0019266	Larp4b	100	78.510	ENSCPBG00000017063	LARP4B	100	76.133	Chrysemys_picta_bellii
MGP_PahariEiJ_G0019266	Larp4b	100	86.198	ENSCANG00000038021	LARP4B	100	86.198	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0019266	Larp4b	100	94.737	ENSCGRG00001022930	Larp4b	100	94.737	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0019266	Larp4b	100	94.737	ENSCGRG00000006022	Larp4b	100	94.737	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0019266	Larp4b	100	53.876	ENSCSEG00000007342	LARP4B	100	54.008	Cynoglossus_semilaevis
MGP_PahariEiJ_G0019266	Larp4b	100	55.362	ENSCVAG00000008910	LARP4B	100	56.180	Cyprinodon_variegatus
MGP_PahariEiJ_G0019266	Larp4b	89	52.562	ENSDARG00000062146	larp4b	90	53.509	Danio_rerio
MGP_PahariEiJ_G0019266	Larp4b	93	89.315	ENSDNOG00000045543	-	100	89.315	Dasypus_novemcinctus
MGP_PahariEiJ_G0019266	Larp4b	100	88.671	ENSDORG00000009328	Larp4b	100	88.671	Dipodomys_ordii
MGP_PahariEiJ_G0019266	Larp4b	89	82.591	ENSETEG00000011249	LARP4B	91	84.536	Echinops_telfairi
MGP_PahariEiJ_G0019266	Larp4b	100	86.622	ENSEASG00005019068	-	100	86.622	Equus_asinus_asinus
MGP_PahariEiJ_G0019266	Larp4b	100	86.486	ENSECAG00000024040	LARP4B	100	86.486	Equus_caballus
MGP_PahariEiJ_G0019266	Larp4b	100	81.292	ENSEEUG00000008391	LARP4B	98	81.292	Erinaceus_europaeus
MGP_PahariEiJ_G0019266	Larp4b	86	50.000	ENSELUG00000001417	-	94	41.604	Esox_lucius
MGP_PahariEiJ_G0019266	Larp4b	100	61.424	ENSELUG00000008626	LARP4B	100	57.463	Esox_lucius
MGP_PahariEiJ_G0019266	Larp4b	100	87.324	ENSFCAG00000000721	-	100	84.906	Felis_catus
MGP_PahariEiJ_G0019266	Larp4b	100	77.296	ENSFALG00000006961	LARP4B	100	75.200	Ficedula_albicollis
MGP_PahariEiJ_G0019266	Larp4b	100	93.298	ENSFDAG00000006158	LARP4B	97	90.270	Fukomys_damarensis
MGP_PahariEiJ_G0019266	Larp4b	100	51.102	ENSFHEG00000013037	LARP4B	65	89.916	Fundulus_heteroclitus
MGP_PahariEiJ_G0019266	Larp4b	82	65.940	ENSGMOG00000010818	-	91	60.656	Gadus_morhua
MGP_PahariEiJ_G0019266	Larp4b	100	77.990	ENSGALG00000006672	LARP4B	100	75.564	Gallus_gallus
MGP_PahariEiJ_G0019266	Larp4b	100	57.364	ENSGACG00000017535	LARP4B	98	58.269	Gasterosteus_aculeatus
MGP_PahariEiJ_G0019266	Larp4b	90	81.018	ENSGAGG00000008598	LARP4B	100	77.924	Gopherus_agassizii
MGP_PahariEiJ_G0019266	Larp4b	100	87.686	ENSGGOG00000003572	LARP4B	100	87.686	Gorilla_gorilla
MGP_PahariEiJ_G0019266	Larp4b	100	61.938	ENSHBUG00000007535	LARP4B	100	56.391	Haplochromis_burtoni
MGP_PahariEiJ_G0019266	Larp4b	100	92.794	ENSHGLG00000012936	LARP4B	100	92.319	Heterocephalus_glaber_female
MGP_PahariEiJ_G0019266	Larp4b	100	92.945	ENSHGLG00100016220	-	100	90.541	Heterocephalus_glaber_male
MGP_PahariEiJ_G0019266	Larp4b	86	78.589	ENSHGLG00100017261	-	100	74.884	Heterocephalus_glaber_male
MGP_PahariEiJ_G0019266	Larp4b	86	56.818	ENSHCOG00000011581	LARP4B	89	54.420	Hippocampus_comes
MGP_PahariEiJ_G0019266	Larp4b	92	52.000	ENSIPUG00000009705	larp4b	93	51.857	Ictalurus_punctatus
MGP_PahariEiJ_G0019266	Larp4b	100	94.718	ENSSTOG00000000587	LARP4B	100	88.259	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0019266	Larp4b	100	90.798	ENSJJAG00000020847	Larp4b	100	90.798	Jaculus_jaculus
MGP_PahariEiJ_G0019266	Larp4b	100	62.988	ENSKMAG00000021674	LARP4B	100	57.731	Kryptolebias_marmoratus
MGP_PahariEiJ_G0019266	Larp4b	86	61.176	ENSLBEG00000025293	-	81	61.175	Labrus_bergylta
MGP_PahariEiJ_G0019266	Larp4b	90	71.012	ENSLACG00000009492	LARP4B	100	66.038	Latimeria_chalumnae
MGP_PahariEiJ_G0019266	Larp4b	100	65.445	ENSLOCG00000012290	larp4b	100	66.427	Lepisosteus_oculatus
MGP_PahariEiJ_G0019266	Larp4b	100	87.500	ENSLAFG00000015334	LARP4B	100	87.050	Loxodonta_africana
MGP_PahariEiJ_G0019266	Larp4b	100	88.092	ENSMFAG00000001766	LARP4B	100	86.062	Macaca_fascicularis
MGP_PahariEiJ_G0019266	Larp4b	100	88.092	ENSMMUG00000005279	LARP4B	100	88.092	Macaca_mulatta
MGP_PahariEiJ_G0019266	Larp4b	100	87.957	ENSMNEG00000014019	LARP4B	100	86.062	Macaca_nemestrina
MGP_PahariEiJ_G0019266	Larp4b	100	87.838	ENSMLEG00000035198	LARP4B	100	87.838	Mandrillus_leucophaeus
MGP_PahariEiJ_G0019266	Larp4b	100	59.295	ENSMAMG00000013742	LARP4B	100	56.164	Mastacembelus_armatus
MGP_PahariEiJ_G0019266	Larp4b	81	70.796	ENSMZEG00005014594	-	100	57.572	Maylandia_zebra
MGP_PahariEiJ_G0019266	Larp4b	86	62.222	ENSMZEG00005006498	-	96	61.254	Maylandia_zebra
MGP_PahariEiJ_G0019266	Larp4b	100	78.783	ENSMGAG00000005472	LARP4B	100	74.133	Meleagris_gallopavo
MGP_PahariEiJ_G0019266	Larp4b	100	95.626	ENSMAUG00000021657	Larp4b	100	96.485	Mesocricetus_auratus
MGP_PahariEiJ_G0019266	Larp4b	100	84.303	ENSMICG00000001301	LARP4B	100	82.003	Microcebus_murinus
MGP_PahariEiJ_G0019266	Larp4b	100	95.023	ENSMOCG00000021452	Larp4b	100	95.023	Microtus_ochrogaster
MGP_PahariEiJ_G0019266	Larp4b	79	69.374	ENSMMOG00000011253	-	89	61.675	Mola_mola
MGP_PahariEiJ_G0019266	Larp4b	100	77.644	ENSMODG00000005957	LARP4B	100	73.810	Monodelphis_domestica
MGP_PahariEiJ_G0019266	Larp4b	100	49.800	ENSMALG00000012432	LARP4B	100	50.999	Monopterus_albus
MGP_PahariEiJ_G0019266	Larp4b	100	97.429	MGP_CAROLIEiJ_G0018216	Larp4b	100	97.429	Mus_caroli
MGP_PahariEiJ_G0019266	Larp4b	100	97.436	ENSMUSG00000033499	Larp4b	100	97.436	Mus_musculus
MGP_PahariEiJ_G0019266	Larp4b	100	97.301	MGP_SPRETEiJ_G0019074	Larp4b	100	97.301	Mus_spretus
MGP_PahariEiJ_G0019266	Larp4b	100	86.972	ENSMPUG00000016220	LARP4B	97	84.730	Mustela_putorius_furo
MGP_PahariEiJ_G0019266	Larp4b	93	87.692	ENSMLUG00000005880	LARP4B	99	82.803	Myotis_lucifugus
MGP_PahariEiJ_G0019266	Larp4b	100	92.945	ENSNGAG00000001750	Larp4b	100	90.663	Nannospalax_galili
MGP_PahariEiJ_G0019266	Larp4b	78	62.704	ENSNBRG00000020018	LARP4B	88	55.556	Neolamprologus_brichardi
MGP_PahariEiJ_G0019266	Larp4b	100	87.686	ENSNLEG00000013442	LARP4B	100	87.686	Nomascus_leucogenys
MGP_PahariEiJ_G0019266	Larp4b	79	84.211	ENSMEUG00000013114	-	70	84.211	Notamacropus_eugenii
MGP_PahariEiJ_G0019266	Larp4b	98	90.777	ENSOPRG00000003300	LARP4B	100	87.534	Ochotona_princeps
MGP_PahariEiJ_G0019266	Larp4b	100	87.141	ENSODEG00000001109	LARP4B	100	87.141	Octodon_degus
MGP_PahariEiJ_G0019266	Larp4b	100	63.514	ENSONIG00000017705	LARP4B	100	59.383	Oreochromis_niloticus
MGP_PahariEiJ_G0019266	Larp4b	100	77.163	ENSOANG00000006100	LARP4B	100	74.637	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0019266	Larp4b	100	89.069	ENSOCUG00000004950	LARP4B	97	88.976	Oryctolagus_cuniculus
MGP_PahariEiJ_G0019266	Larp4b	100	54.693	ENSORLG00000006080	LARP4B	100	54.944	Oryzias_latipes
MGP_PahariEiJ_G0019266	Larp4b	100	54.682	ENSORLG00020020940	LARP4B	100	54.806	Oryzias_latipes_hni
MGP_PahariEiJ_G0019266	Larp4b	100	60.590	ENSORLG00015020608	LARP4B	100	54.819	Oryzias_latipes_hsok
MGP_PahariEiJ_G0019266	Larp4b	100	59.756	ENSOMEG00000019619	LARP4B	100	54.464	Oryzias_melastigma
MGP_PahariEiJ_G0019266	Larp4b	93	85.417	ENSOGAG00000011540	LARP4B	99	83.571	Otolemur_garnettii
MGP_PahariEiJ_G0019266	Larp4b	100	81.611	ENSOARG00000015320	LARP4B	98	81.611	Ovis_aries
MGP_PahariEiJ_G0019266	Larp4b	100	87.551	ENSPPAG00000039232	LARP4B	100	87.551	Pan_paniscus
MGP_PahariEiJ_G0019266	Larp4b	100	85.270	ENSPPRG00000009489	LARP4B	100	85.270	Panthera_pardus
MGP_PahariEiJ_G0019266	Larp4b	100	85.135	ENSPTIG00000008543	LARP4B	100	85.135	Panthera_tigris_altaica
MGP_PahariEiJ_G0019266	Larp4b	100	87.551	ENSPTRG00000002235	LARP4B	100	87.551	Pan_troglodytes
MGP_PahariEiJ_G0019266	Larp4b	100	88.092	ENSPANG00000023546	LARP4B	100	86.198	Papio_anubis
MGP_PahariEiJ_G0019266	Larp4b	99	60.171	ENSPKIG00000012368	LARP4B	99	56.454	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0019266	Larp4b	85	85.397	ENSPSIG00000005600	LARP4B	99	85.397	Pelodiscus_sinensis
MGP_PahariEiJ_G0019266	Larp4b	98	60.577	ENSPMGG00000008261	LARP4B	91	54.298	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0019266	Larp4b	100	95.399	ENSPEMG00000014052	Larp4b	100	95.399	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0019266	Larp4b	78	82.081	ENSPCIG00000006866	-	98	45.110	Phascolarctos_cinereus
MGP_PahariEiJ_G0019266	Larp4b	100	60.032	ENSPFOG00000000029	LARP4B	100	55.569	Poecilia_formosa
MGP_PahariEiJ_G0019266	Larp4b	100	60.032	ENSPLAG00000002871	LARP4B	100	56.567	Poecilia_latipinna
MGP_PahariEiJ_G0019266	Larp4b	100	59.935	ENSPMEG00000016361	LARP4B	100	55.501	Poecilia_mexicana
MGP_PahariEiJ_G0019266	Larp4b	100	87.703	ENSPPYG00000002035	LARP4B	97	87.703	Pongo_abelii
MGP_PahariEiJ_G0019266	Larp4b	100	88.007	ENSPCOG00000014688	LARP4B	100	85.927	Propithecus_coquereli
MGP_PahariEiJ_G0019266	Larp4b	85	88.571	ENSPVAG00000009784	LARP4B	88	88.571	Pteropus_vampyrus
MGP_PahariEiJ_G0019266	Larp4b	100	62.735	ENSPNYG00000024252	LARP4B	100	56.946	Pundamilia_nyererei
MGP_PahariEiJ_G0019266	Larp4b	93	58.782	ENSPNAG00000028956	larp4b	95	52.156	Pygocentrus_nattereri
MGP_PahariEiJ_G0019266	Larp4b	99	96.070	ENSRNOG00000015888	Larp4b	100	96.070	Rattus_norvegicus
MGP_PahariEiJ_G0019266	Larp4b	100	87.821	ENSRBIG00000033294	LARP4B	100	87.821	Rhinopithecus_bieti
MGP_PahariEiJ_G0019266	Larp4b	100	87.551	ENSRROG00000033879	LARP4B	100	87.551	Rhinopithecus_roxellana
MGP_PahariEiJ_G0019266	Larp4b	100	81.867	ENSSBOG00000021109	LARP4B	100	81.867	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0019266	Larp4b	100	78.417	ENSSHAG00000013392	LARP4B	100	75.668	Sarcophilus_harrisii
MGP_PahariEiJ_G0019266	Larp4b	91	59.568	ENSSFOG00015003256	LARP4B	93	56.957	Scleropages_formosus
MGP_PahariEiJ_G0019266	Larp4b	100	59.316	ENSSMAG00000005982	-	99	75.862	Scophthalmus_maximus
MGP_PahariEiJ_G0019266	Larp4b	100	61.485	ENSSDUG00000006704	LARP4B	100	56.787	Seriola_dumerili
MGP_PahariEiJ_G0019266	Larp4b	83	68.632	ENSSLDG00000020660	LARP4B	98	60.389	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0019266	Larp4b	64	98.113	ENSSARG00000001243	-	79	98.113	Sorex_araneus
MGP_PahariEiJ_G0019266	Larp4b	100	73.450	ENSSPUG00000002102	-	100	73.450	Sphenodon_punctatus
MGP_PahariEiJ_G0019266	Larp4b	80	80.000	ENSSPUG00000013734	-	91	80.000	Sphenodon_punctatus
MGP_PahariEiJ_G0019266	Larp4b	100	60.964	ENSSPAG00000014628	LARP4B	100	60.964	Stegastes_partitus
MGP_PahariEiJ_G0019266	Larp4b	100	81.486	ENSSSCG00000011162	LARP4B	100	84.211	Sus_scrofa
MGP_PahariEiJ_G0019266	Larp4b	100	78.049	ENSTGUG00000000811	-	100	75.770	Taeniopygia_guttata
MGP_PahariEiJ_G0019266	Larp4b	98	64.891	ENSTNIG00000007991	LARP4B	99	55.432	Tetraodon_nigroviridis
MGP_PahariEiJ_G0019266	Larp4b	100	56.016	ENSTNIG00000004571	-	98	56.662	Tetraodon_nigroviridis
MGP_PahariEiJ_G0019266	Larp4b	89	89.563	ENSTTRG00000011151	LARP4B	90	88.554	Tursiops_truncatus
MGP_PahariEiJ_G0019266	Larp4b	88	86.154	ENSUAMG00000016461	LARP4B	95	86.154	Ursus_americanus
MGP_PahariEiJ_G0019266	Larp4b	100	85.676	ENSUMAG00000016127	LARP4B	100	85.676	Ursus_maritimus
MGP_PahariEiJ_G0019266	Larp4b	57	94.944	ENSVPAG00000000128	-	73	94.944	Vicugna_pacos
MGP_PahariEiJ_G0019266	Larp4b	100	88.028	ENSVVUG00000008641	LARP4B	100	85.811	Vulpes_vulpes
MGP_PahariEiJ_G0019266	Larp4b	99	73.986	ENSXETG00000016882	larp4b	100	70.106	Xenopus_tropicalis
MGP_PahariEiJ_G0019266	Larp4b	100	57.363	ENSXCOG00000019952	LARP4B	100	53.777	Xiphophorus_couchianus
MGP_PahariEiJ_G0019266	Larp4b	100	59.774	ENSXMAG00000021533	LARP4B	100	55.404	Xiphophorus_maculatus