EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0019509 (Gene tree)
Gene ID: 110333981
Gene Symbol: Snrnp48
Alias: 1110050F08Rik|6530403A03Rik
Full Name: small nuclear ribonucleoprotein U11/U12 subunit 48
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Plus strand
Length: 21504 bases
Position: chr16:41242139-41263642
Accession: 110333981
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0040742	zf-U11-48K	PF05253.12	1e-09	1	1
MGP_PahariEiJ_P0040743	zf-U11-48K	PF05253.12	1e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0040742	-	1811	-	MGP_PahariEiJ_P0040742	337 (aa)	XP_021071455	UPI000A306638
MGP_PahariEiJ_T0040743	-	1096	-	MGP_PahariEiJ_P0040743	337 (aa)	XP_021071455	UPI000A306638

Gene Model

Click here to download MGP_PahariEiJ_G0019509's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0019509's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0019509	Snrnp48	100	86.136	ENSG00000168566	SNRNP48	100	87.021	Homo_sapiens
MGP_PahariEiJ_G0019509	Snrnp48	82	47.887	ENSAPOG00000021430	snrnp48	96	43.732	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0019509	Snrnp48	99	84.438	ENSAMEG00000017349	SNRNP48	100	84.438	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0019509	Snrnp48	89	45.695	ENSACIG00000002032	snrnp48	96	42.857	Amphilophus_citrinellus
MGP_PahariEiJ_G0019509	Snrnp48	82	47.535	ENSAOCG00000010562	snrnp48	96	43.804	Amphiprion_ocellaris
MGP_PahariEiJ_G0019509	Snrnp48	82	47.872	ENSAPEG00000003231	snrnp48	96	44.058	Amphiprion_percula
MGP_PahariEiJ_G0019509	Snrnp48	77	49.632	ENSATEG00000020210	snrnp48	81	50.357	Anabas_testudineus
MGP_PahariEiJ_G0019509	Snrnp48	82	65.625	ENSACAG00000002811	SNRNP48	89	65.625	Anolis_carolinensis
MGP_PahariEiJ_G0019509	Snrnp48	100	85.841	ENSANAG00000033538	SNRNP48	100	86.726	Aotus_nancymaae
MGP_PahariEiJ_G0019509	Snrnp48	93	46.584	ENSAMXG00000015309	snrnp48	97	45.133	Astyanax_mexicanus
MGP_PahariEiJ_G0019509	Snrnp48	100	81.765	ENSBTAG00000001123	SNRNP48	100	82.941	Bos_taurus
MGP_PahariEiJ_G0019509	Snrnp48	100	86.431	ENSCJAG00000021330	SNRNP48	100	87.316	Callithrix_jacchus
MGP_PahariEiJ_G0019509	Snrnp48	99	86.607	ENSCAFG00000009574	SNRNP48	83	86.350	Canis_familiaris
MGP_PahariEiJ_G0019509	Snrnp48	99	86.647	ENSCAFG00020013203	SNRNP48	99	86.647	Canis_lupus_dingo
MGP_PahariEiJ_G0019509	Snrnp48	100	83.529	ENSCHIG00000015216	SNRNP48	100	84.706	Capra_hircus
MGP_PahariEiJ_G0019509	Snrnp48	100	85.546	ENSTSYG00000000698	SNRNP48	100	86.431	Carlito_syrichta
MGP_PahariEiJ_G0019509	Snrnp48	91	82.410	ENSCAPG00000006768	SNRNP48	100	82.410	Cavia_aperea
MGP_PahariEiJ_G0019509	Snrnp48	100	85.546	ENSCPOG00000007910	SNRNP48	100	85.546	Cavia_porcellus
MGP_PahariEiJ_G0019509	Snrnp48	100	84.956	ENSCCAG00000035652	SNRNP48	100	85.841	Cebus_capucinus
MGP_PahariEiJ_G0019509	Snrnp48	100	85.546	ENSCATG00000033947	SNRNP48	100	86.431	Cercocebus_atys
MGP_PahariEiJ_G0019509	Snrnp48	100	86.136	ENSCLAG00000003765	SNRNP48	100	87.021	Chinchilla_lanigera
MGP_PahariEiJ_G0019509	Snrnp48	100	86.136	ENSCSAG00000007409	SNRNP48	100	87.021	Chlorocebus_sabaeus
MGP_PahariEiJ_G0019509	Snrnp48	84	64.784	ENSCPBG00000019146	SNRNP48	91	64.784	Chrysemys_picta_bellii
MGP_PahariEiJ_G0019509	Snrnp48	100	86.136	ENSCANG00000030017	SNRNP48	100	87.021	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0019509	Snrnp48	100	94.659	ENSCGRG00001001076	-	100	94.659	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0019509	Snrnp48	99	74.174	ENSCGRG00001008805	-	95	72.973	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0019509	Snrnp48	100	94.659	ENSCGRG00000007781	Snrnp48	100	94.659	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0019509	Snrnp48	89	43.522	ENSCSEG00000000722	snrnp48	95	42.229	Cynoglossus_semilaevis
MGP_PahariEiJ_G0019509	Snrnp48	96	44.910	ENSCVAG00000019829	snrnp48	66	49.242	Cyprinodon_variegatus
MGP_PahariEiJ_G0019509	Snrnp48	82	45.745	ENSDARG00000039989	snrnp48	96	43.243	Danio_rerio
MGP_PahariEiJ_G0019509	Snrnp48	99	85.672	ENSDNOG00000014978	SNRNP48	99	85.672	Dasypus_novemcinctus
MGP_PahariEiJ_G0019509	Snrnp48	99	85.841	ENSDORG00000015140	Snrnp48	99	85.841	Dipodomys_ordii
MGP_PahariEiJ_G0019509	Snrnp48	99	86.686	ENSEASG00005012021	SNRNP48	99	86.686	Equus_asinus_asinus
MGP_PahariEiJ_G0019509	Snrnp48	100	87.316	ENSECAG00000026937	SNRNP48	100	87.316	Equus_caballus
MGP_PahariEiJ_G0019509	Snrnp48	100	66.077	ENSEEUG00000015437	SNRNP48	99	66.077	Erinaceus_europaeus
MGP_PahariEiJ_G0019509	Snrnp48	88	47.541	ENSELUG00000009766	snrnp48	78	48.410	Esox_lucius
MGP_PahariEiJ_G0019509	Snrnp48	100	87.021	ENSFCAG00000018853	SNRNP48	100	87.021	Felis_catus
MGP_PahariEiJ_G0019509	Snrnp48	83	63.699	ENSFALG00000007797	SNRNP48	93	64.384	Ficedula_albicollis
MGP_PahariEiJ_G0019509	Snrnp48	99	83.432	ENSFDAG00000009231	SNRNP48	99	85.503	Fukomys_damarensis
MGP_PahariEiJ_G0019509	Snrnp48	59	56.436	ENSFHEG00000014647	snrnp48	97	47.000	Fundulus_heteroclitus
MGP_PahariEiJ_G0019509	Snrnp48	73	47.581	ENSGMOG00000018599	-	77	47.638	Gadus_morhua
MGP_PahariEiJ_G0019509	Snrnp48	76	66.415	ENSGALG00000013005	SNRNP48	90	66.415	Gallus_gallus
MGP_PahariEiJ_G0019509	Snrnp48	95	42.353	ENSGAFG00000021639	snrnp48	94	44.179	Gambusia_affinis
MGP_PahariEiJ_G0019509	Snrnp48	74	49.402	ENSGACG00000017756	-	96	45.289	Gasterosteus_aculeatus
MGP_PahariEiJ_G0019509	Snrnp48	84	63.667	ENSGAGG00000000865	SNRNP48	97	63.667	Gopherus_agassizii
MGP_PahariEiJ_G0019509	Snrnp48	100	86.136	ENSGGOG00000013220	SNRNP48	100	87.021	Gorilla_gorilla
MGP_PahariEiJ_G0019509	Snrnp48	75	48.047	ENSHBUG00000017066	snrnp48	95	42.690	Haplochromis_burtoni
MGP_PahariEiJ_G0019509	Snrnp48	99	85.207	ENSHGLG00000015241	SNRNP48	99	86.095	Heterocephalus_glaber_female
MGP_PahariEiJ_G0019509	Snrnp48	99	85.207	ENSHGLG00100010027	SNRNP48	99	86.095	Heterocephalus_glaber_male
MGP_PahariEiJ_G0019509	Snrnp48	72	47.561	ENSHCOG00000014066	snrnp48	92	42.274	Hippocampus_comes
MGP_PahariEiJ_G0019509	Snrnp48	100	89.676	ENSSTOG00000014635	SNRNP48	100	90.560	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0019509	Snrnp48	100	85.841	ENSJJAG00000011495	Snrnp48	100	85.841	Jaculus_jaculus
MGP_PahariEiJ_G0019509	Snrnp48	91	45.130	ENSKMAG00000016514	snrnp48	94	42.647	Kryptolebias_marmoratus
MGP_PahariEiJ_G0019509	Snrnp48	77	47.893	ENSLBEG00000026249	snrnp48	95	43.732	Labrus_bergylta
MGP_PahariEiJ_G0019509	Snrnp48	98	53.134	ENSLACG00000003958	SNRNP48	99	52.035	Latimeria_chalumnae
MGP_PahariEiJ_G0019509	Snrnp48	84	52.249	ENSLOCG00000004187	snrnp48	95	49.852	Lepisosteus_oculatus
MGP_PahariEiJ_G0019509	Snrnp48	100	83.481	ENSLAFG00000011152	SNRNP48	100	83.481	Loxodonta_africana
MGP_PahariEiJ_G0019509	Snrnp48	100	86.431	ENSMFAG00000045216	SNRNP48	100	87.316	Macaca_fascicularis
MGP_PahariEiJ_G0019509	Snrnp48	100	86.431	ENSMMUG00000014785	SNRNP48	100	87.316	Macaca_mulatta
MGP_PahariEiJ_G0019509	Snrnp48	100	86.431	ENSMNEG00000042269	SNRNP48	100	87.316	Macaca_nemestrina
MGP_PahariEiJ_G0019509	Snrnp48	100	86.431	ENSMLEG00000034004	SNRNP48	100	87.316	Mandrillus_leucophaeus
MGP_PahariEiJ_G0019509	Snrnp48	77	48.077	ENSMAMG00000018673	snrnp48	83	44.023	Mastacembelus_armatus
MGP_PahariEiJ_G0019509	Snrnp48	82	65.306	ENSMGAG00000006037	SNRNP48	99	64.726	Meleagris_gallopavo
MGP_PahariEiJ_G0019509	Snrnp48	100	94.362	ENSMAUG00000011944	Snrnp48	100	94.362	Mesocricetus_auratus
MGP_PahariEiJ_G0019509	Snrnp48	100	86.431	ENSMICG00000012497	SNRNP48	100	87.316	Microcebus_murinus
MGP_PahariEiJ_G0019509	Snrnp48	100	94.065	ENSMOCG00000015555	Snrnp48	100	94.065	Microtus_ochrogaster
MGP_PahariEiJ_G0019509	Snrnp48	54	52.973	ENSMMOG00000003072	-	58	52.973	Mola_mola
MGP_PahariEiJ_G0019509	Snrnp48	99	69.565	ENSMODG00000009996	SNRNP48	93	69.855	Monodelphis_domestica
MGP_PahariEiJ_G0019509	Snrnp48	76	49.035	ENSMALG00000005725	snrnp48	82	47.887	Monopterus_albus
MGP_PahariEiJ_G0019509	Snrnp48	100	97.626	MGP_CAROLIEiJ_G0018441	Snrnp48	100	97.626	Mus_caroli
MGP_PahariEiJ_G0019509	Snrnp48	100	97.626	ENSMUSG00000021431	Snrnp48	100	97.626	Mus_musculus
MGP_PahariEiJ_G0019509	Snrnp48	100	97.329	MGP_SPRETEiJ_G0019321	Snrnp48	100	97.329	Mus_spretus
MGP_PahariEiJ_G0019509	Snrnp48	99	90.828	ENSNGAG00000004849	Snrnp48	99	90.828	Nannospalax_galili
MGP_PahariEiJ_G0019509	Snrnp48	75	47.656	ENSNBRG00000012127	snrnp48	95	42.398	Neolamprologus_brichardi
MGP_PahariEiJ_G0019509	Snrnp48	100	86.431	ENSNLEG00000011667	SNRNP48	100	87.316	Nomascus_leucogenys
MGP_PahariEiJ_G0019509	Snrnp48	95	79.567	ENSOPRG00000015471	SNRNP48	100	78.947	Ochotona_princeps
MGP_PahariEiJ_G0019509	Snrnp48	96	44.681	ENSONIG00000001520	snrnp48	95	41.880	Oreochromis_niloticus
MGP_PahariEiJ_G0019509	Snrnp48	57	61.538	ENSOANG00000019888	-	100	62.981	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0019509	Snrnp48	85	87.762	ENSOCUG00000005168	SNRNP48	100	87.500	Oryctolagus_cuniculus
MGP_PahariEiJ_G0019509	Snrnp48	89	47.727	ENSORLG00000015654	snrnp48	94	45.376	Oryzias_latipes
MGP_PahariEiJ_G0019509	Snrnp48	89	47.078	ENSORLG00020015976	snrnp48	82	45.161	Oryzias_latipes_hni
MGP_PahariEiJ_G0019509	Snrnp48	89	48.052	ENSORLG00015022379	snrnp48	81	46.243	Oryzias_latipes_hsok
MGP_PahariEiJ_G0019509	Snrnp48	97	43.881	ENSOMEG00000022007	snrnp48	95	44.348	Oryzias_melastigma
MGP_PahariEiJ_G0019509	Snrnp48	91	86.230	ENSOGAG00000005275	SNRNP48	96	85.489	Otolemur_garnettii
MGP_PahariEiJ_G0019509	Snrnp48	85	84.321	ENSOARG00000017319	SNRNP48	100	84.321	Ovis_aries
MGP_PahariEiJ_G0019509	Snrnp48	100	86.431	ENSPPAG00000032873	SNRNP48	100	87.316	Pan_paniscus
MGP_PahariEiJ_G0019509	Snrnp48	100	86.726	ENSPPRG00000004283	SNRNP48	100	86.726	Panthera_pardus
MGP_PahariEiJ_G0019509	Snrnp48	85	86.760	ENSPTIG00000013502	SNRNP48	100	86.760	Panthera_tigris_altaica
MGP_PahariEiJ_G0019509	Snrnp48	100	86.431	ENSPTRG00000017703	SNRNP48	100	87.316	Pan_troglodytes
MGP_PahariEiJ_G0019509	Snrnp48	100	86.431	ENSPANG00000000771	SNRNP48	100	87.316	Papio_anubis
MGP_PahariEiJ_G0019509	Snrnp48	95	46.429	ENSPKIG00000013703	snrnp48	67	46.828	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0019509	Snrnp48	84	63.787	ENSPSIG00000002213	SNRNP48	94	63.787	Pelodiscus_sinensis
MGP_PahariEiJ_G0019509	Snrnp48	74	48.638	ENSPMGG00000008120	snrnp48	90	48.638	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0019509	Snrnp48	100	94.955	ENSPEMG00000008872	Snrnp48	100	94.955	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0019509	Snrnp48	75	50.588	ENSPFOG00000003578	snrnp48	93	45.133	Poecilia_formosa
MGP_PahariEiJ_G0019509	Snrnp48	69	49.573	ENSPLAG00000002290	snrnp48	79	49.573	Poecilia_latipinna
MGP_PahariEiJ_G0019509	Snrnp48	75	49.804	ENSPMEG00000018033	snrnp48	93	44.543	Poecilia_mexicana
MGP_PahariEiJ_G0019509	Snrnp48	74	49.801	ENSPREG00000018541	snrnp48	93	44.543	Poecilia_reticulata
MGP_PahariEiJ_G0019509	Snrnp48	100	84.956	ENSPPYG00000016209	SNRNP48	100	85.841	Pongo_abelii
MGP_PahariEiJ_G0019509	Snrnp48	79	68.539	ENSPCAG00000011991	SNRNP48	99	68.539	Procavia_capensis
MGP_PahariEiJ_G0019509	Snrnp48	100	84.956	ENSPVAG00000002854	SNRNP48	100	84.956	Pteropus_vampyrus
MGP_PahariEiJ_G0019509	Snrnp48	75	48.047	ENSPNYG00000015399	snrnp48	90	46.021	Pundamilia_nyererei
MGP_PahariEiJ_G0019509	Snrnp48	100	95.846	ENSRNOG00000013756	Snrnp48	100	95.846	Rattus_norvegicus
MGP_PahariEiJ_G0019509	Snrnp48	92	86.774	ENSRBIG00000043856	SNRNP48	98	86.774	Rhinopithecus_bieti
MGP_PahariEiJ_G0019509	Snrnp48	100	86.136	ENSRROG00000043229	SNRNP48	100	87.021	Rhinopithecus_roxellana
MGP_PahariEiJ_G0019509	Snrnp48	100	86.431	ENSSBOG00000019486	SNRNP48	100	87.316	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0019509	Snrnp48	99	70.487	ENSSHAG00000014483	SNRNP48	100	70.487	Sarcophilus_harrisii
MGP_PahariEiJ_G0019509	Snrnp48	74	51.953	ENSSFOG00015006610	snrnp48	64	50.909	Scleropages_formosus
MGP_PahariEiJ_G0019509	Snrnp48	85	47.782	ENSSDUG00000014953	snrnp48	92	44.277	Seriola_dumerili
MGP_PahariEiJ_G0019509	Snrnp48	85	47.782	ENSSLDG00000005989	snrnp48	92	44.277	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0019509	Snrnp48	84	64.430	ENSSPUG00000006257	SNRNP48	85	66.107	Sphenodon_punctatus
MGP_PahariEiJ_G0019509	Snrnp48	96	42.943	ENSSPAG00000006454	snrnp48	93	43.787	Stegastes_partitus
MGP_PahariEiJ_G0019509	Snrnp48	83	62.799	ENSTGUG00000007575	SNRNP48	93	62.799	Taeniopygia_guttata
MGP_PahariEiJ_G0019509	Snrnp48	74	50.199	ENSTRUG00000007031	snrnp48	92	45.897	Takifugu_rubripes
MGP_PahariEiJ_G0019509	Snrnp48	75	46.667	ENSTNIG00000012977	-	75	46.667	Tetraodon_nigroviridis
MGP_PahariEiJ_G0019509	Snrnp48	100	71.598	ENSTBEG00000015620	SNRNP48	100	71.598	Tupaia_belangeri
MGP_PahariEiJ_G0019509	Snrnp48	100	86.431	ENSTTRG00000016715	SNRNP48	100	86.431	Tursiops_truncatus
MGP_PahariEiJ_G0019509	Snrnp48	100	86.431	ENSUAMG00000003690	SNRNP48	100	87.316	Ursus_americanus
MGP_PahariEiJ_G0019509	Snrnp48	85	82.927	ENSVPAG00000003557	SNRNP48	100	82.927	Vicugna_pacos
MGP_PahariEiJ_G0019509	Snrnp48	99	86.647	ENSVVUG00000004996	SNRNP48	99	86.647	Vulpes_vulpes
MGP_PahariEiJ_G0019509	Snrnp48	86	53.512	ENSXETG00000020447	snrnp48	97	51.632	Xenopus_tropicalis
MGP_PahariEiJ_G0019509	Snrnp48	69	48.936	ENSXCOG00000004478	snrnp48	71	48.936	Xiphophorus_couchianus
MGP_PahariEiJ_G0019509	Snrnp48	84	47.887	ENSXMAG00000013595	snrnp48	93	45.133	Xiphophorus_maculatus