EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0019699 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Plus strand
Length: 85302 bases
Position: chr16:66218740-66304041
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0041340	ResIII	PF04851.15	1.5e-11	1	1
MGP_PahariEiJ_P0041343	ResIII	PF04851.15	2e-11	1	1
MGP_PahariEiJ_P0041339	ResIII	PF04851.15	2.1e-11	1	1
MGP_PahariEiJ_P0041337	ResIII	PF04851.15	1.4e-10	1	1
MGP_PahariEiJ_P0041342	ResIII	PF04851.15	1.4e-10	1	1
MGP_PahariEiJ_P0041336	ResIII	PF04851.15	1.1e-09	1	1
MGP_PahariEiJ_P0041340	DEAD	PF00270.29	3.5e-07	1	1
MGP_PahariEiJ_P0041342	DEAD	PF00270.29	4.1e-07	1	1
MGP_PahariEiJ_P0041343	DEAD	PF00270.29	5.2e-07	1	1
MGP_PahariEiJ_P0041339	DEAD	PF00270.29	5.5e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0041336	-	1597	-	MGP_PahariEiJ_P0041336	467 (aa)	-	-
MGP_PahariEiJ_T0041337	-	3339	-	MGP_PahariEiJ_P0041337	842 (aa)	-	-
MGP_PahariEiJ_T0041338	-	1819	-	-	- (aa)	-	-
MGP_PahariEiJ_T0041339	-	2688	-	MGP_PahariEiJ_P0041339	699 (aa)	-	-
MGP_PahariEiJ_T0041343	-	2525	-	MGP_PahariEiJ_P0041343	684 (aa)	-	-
MGP_PahariEiJ_T0041342	-	1726	-	MGP_PahariEiJ_P0041342	574 (aa)	-	-
MGP_PahariEiJ_T0041345	-	922	-	-	- (aa)	-	-
MGP_PahariEiJ_T0041344	-	758	-	MGP_PahariEiJ_P0041344	152 (aa)	-	-
MGP_PahariEiJ_T0041346	-	2539	-	MGP_PahariEiJ_P0041346	592 (aa)	-	-
MGP_PahariEiJ_T0041341	-	1956	-	MGP_PahariEiJ_P0041341	191 (aa)	-	-
MGP_PahariEiJ_T0041340	-	1888	-	MGP_PahariEiJ_P0041340	582 (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0019699's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0019699's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PahariEiJ_G0019699	-	82	30.353	MGP_PahariEiJ_G0031579	Smarca1	67	30.680
MGP_PahariEiJ_G0019699	-	82	30.208	MGP_PahariEiJ_G0026845	Chd1l	50	32.781

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0019699	-	100	90.157	ENSG00000182150	ERCC6L2	100	96.341	Homo_sapiens
MGP_PahariEiJ_G0019699	-	100	86.449	ENSAMEG00000011657	ERCC6L2	100	86.829	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0019699	-	91	68.224	ENSATEG00000016700	ercc6l2	53	59.615	Anabas_testudineus
MGP_PahariEiJ_G0019699	-	99	76.281	ENSAPLG00000006105	ERCC6L2	99	75.323	Anas_platyrhynchos
MGP_PahariEiJ_G0019699	-	100	76.316	ENSACAG00000012947	ERCC6L2	100	76.350	Anolis_carolinensis
MGP_PahariEiJ_G0019699	-	89	66.884	ENSACLG00000015088	ercc6l2	60	67.047	Astatotilapia_calliptera
MGP_PahariEiJ_G0019699	-	100	89.714	ENSCJAG00000008862	ERCC6L2	98	89.714	Callithrix_jacchus
MGP_PahariEiJ_G0019699	-	99	88.580	ENSCAFG00000001219	ERCC6L2	84	80.362	Canis_familiaris
MGP_PahariEiJ_G0019699	-	100	90.058	ENSTSYG00000013871	ERCC6L2	99	89.143	Carlito_syrichta
MGP_PahariEiJ_G0019699	-	91	81.265	ENSCAPG00000009212	ERCC6L2	100	81.265	Cavia_aperea
MGP_PahariEiJ_G0019699	-	99	87.994	ENSCPOG00000004544	-	98	85.011	Cavia_porcellus
MGP_PahariEiJ_G0019699	-	100	89.586	ENSCCAG00000026980	ERCC6L2	98	89.586	Cebus_capucinus
MGP_PahariEiJ_G0019699	-	100	76.857	ENSCHOG00000006282	ERCC6L2	98	76.857	Choloepus_hoffmanni
MGP_PahariEiJ_G0019699	-	99	79.795	ENSCPBG00000005414	ERCC6L2	56	64.686	Chrysemys_picta_bellii
MGP_PahariEiJ_G0019699	-	100	89.158	ENSCANG00000039934	ERCC6L2	98	89.158	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0019699	-	100	94.006	ENSCGRG00001022738	Ercc6l2	99	93.133	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0019699	-	99	88.743	ENSCGRG00000015854	Ercc6l2	99	88.743	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0019699	-	90	67.314	ENSDARG00000012403	ercc6l2	53	61.119	Danio_rerio
MGP_PahariEiJ_G0019699	-	98	86.652	ENSDORG00000010788	Ercc6l2	99	87.309	Dipodomys_ordii
MGP_PahariEiJ_G0019699	-	99	84.795	ENSETEG00000010686	ERCC6L2	98	84.000	Echinops_telfairi
MGP_PahariEiJ_G0019699	-	84	90.323	ENSEEUG00000009341	ERCC6L2	99	70.471	Erinaceus_europaeus
MGP_PahariEiJ_G0019699	-	99	77.566	ENSFALG00000003400	ERCC6L2	64	77.068	Ficedula_albicollis
MGP_PahariEiJ_G0019699	-	99	88.743	ENSFDAG00000000805	ERCC6L2	99	87.697	Fukomys_damarensis
MGP_PahariEiJ_G0019699	-	94	63.411	ENSGMOG00000007751	ercc6l2	72	56.283	Gadus_morhua
MGP_PahariEiJ_G0019699	-	99	75.842	ENSGALG00000012621	ERCC6L2	53	64.544	Gallus_gallus
MGP_PahariEiJ_G0019699	-	89	68.189	ENSGACG00000006992	ercc6l2	67	58.767	Gasterosteus_aculeatus
MGP_PahariEiJ_G0019699	-	99	80.527	ENSGAGG00000021675	ERCC6L2	51	67.491	Gopherus_agassizii
MGP_PahariEiJ_G0019699	-	100	89.729	ENSGGOG00000002705	ERCC6L2	98	89.729	Gorilla_gorilla
MGP_PahariEiJ_G0019699	-	80	94.915	ENSHGLG00000009488	ERCC6L2	95	93.370	Heterocephalus_glaber_female
MGP_PahariEiJ_G0019699	-	90	67.205	ENSIPUG00000000283	ercc6l2	56	58.783	Ictalurus_punctatus
MGP_PahariEiJ_G0019699	-	100	88.321	ENSJJAG00000018150	Ercc6l2	100	87.732	Jaculus_jaculus
MGP_PahariEiJ_G0019699	-	99	61.878	ENSLBEG00000003016	ercc6l2	50	55.346	Labrus_bergylta
MGP_PahariEiJ_G0019699	-	99	73.723	ENSLACG00000011767	ERCC6L2	54	61.208	Latimeria_chalumnae
MGP_PahariEiJ_G0019699	-	100	87.901	ENSLAFG00000013092	ERCC6L2	100	87.198	Loxodonta_africana
MGP_PahariEiJ_G0019699	-	100	88.730	ENSMNEG00000035630	ERCC6L2	98	88.730	Macaca_nemestrina
MGP_PahariEiJ_G0019699	-	100	89.016	ENSMLEG00000019530	ERCC6L2	98	89.016	Mandrillus_leucophaeus
MGP_PahariEiJ_G0019699	-	99	94.876	ENSMAUG00000004820	-	100	89.354	Mesocricetus_auratus
MGP_PahariEiJ_G0019699	-	100	90.728	ENSMICG00000029160	ERCC6L2	98	90.728	Microcebus_murinus
MGP_PahariEiJ_G0019699	-	100	93.576	ENSMOCG00000019362	-	100	93.576	Microtus_ochrogaster
MGP_PahariEiJ_G0019699	-	99	61.705	ENSMMOG00000001419	ercc6l2	59	61.705	Mola_mola
MGP_PahariEiJ_G0019699	-	99	63.885	ENSMALG00000016933	ercc6l2	60	67.949	Monopterus_albus
MGP_PahariEiJ_G0019699	-	100	98.392	MGP_CAROLIEiJ_G0018635	-	100	98.392	Mus_caroli
MGP_PahariEiJ_G0019699	-	100	98.392	ENSMUSG00000021470	Ercc6l2	100	98.140	Mus_musculus
MGP_PahariEiJ_G0019699	-	100	98.830	MGP_SPRETEiJ_G0019515	-	100	98.830	Mus_spretus
MGP_PahariEiJ_G0019699	-	94	88.162	ENSMPUG00000006738	ERCC6L2	80	82.425	Mustela_putorius_furo
MGP_PahariEiJ_G0019699	-	100	86.182	ENSMLUG00000000845	ERCC6L2	98	86.182	Myotis_lucifugus
MGP_PahariEiJ_G0019699	-	100	90.857	ENSNGAG00000016174	Ercc6l2	99	90.857	Nannospalax_galili
MGP_PahariEiJ_G0019699	-	100	89.729	ENSNLEG00000016784	ERCC6L2	98	89.729	Nomascus_leucogenys
MGP_PahariEiJ_G0019699	-	92	88.345	ENSOPRG00000011647	ERCC6L2	100	88.585	Ochotona_princeps
MGP_PahariEiJ_G0019699	-	99	88.580	ENSODEG00000016588	ERCC6L2	98	89.720	Octodon_degus
MGP_PahariEiJ_G0019699	-	99	61.239	ENSONIG00000015139	ercc6l2	100	60.734	Oreochromis_niloticus
MGP_PahariEiJ_G0019699	-	100	90.233	ENSOCUG00000000442	-	100	88.873	Oryctolagus_cuniculus
MGP_PahariEiJ_G0019699	-	93	65.884	ENSORLG00000004287	ercc6l2	70	57.105	Oryzias_latipes
MGP_PahariEiJ_G0019699	-	89	68.301	ENSORLG00020002133	ercc6l2	54	57.161	Oryzias_latipes_hni
MGP_PahariEiJ_G0019699	-	89	68.464	ENSORLG00015010250	ercc6l2	71	56.619	Oryzias_latipes_hsok
MGP_PahariEiJ_G0019699	-	89	67.647	ENSOMEG00000021983	ercc6l2	54	56.658	Oryzias_melastigma
MGP_PahariEiJ_G0019699	-	91	92.056	ENSOGAG00000003146	ERCC6L2	66	92.144	Otolemur_garnettii
MGP_PahariEiJ_G0019699	-	99	90.323	ENSOARG00000008546	ERCC6L2	85	79.786	Ovis_aries
MGP_PahariEiJ_G0019699	-	100	90.157	ENSPPAG00000035061	ERCC6L2	98	90.157	Pan_paniscus
MGP_PahariEiJ_G0019699	-	100	88.286	ENSPPRG00000019238	ERCC6L2	98	88.286	Panthera_pardus
MGP_PahariEiJ_G0019699	-	100	87.857	ENSPTIG00000009148	ERCC6L2	98	87.857	Panthera_tigris_altaica
MGP_PahariEiJ_G0019699	-	100	90.014	ENSPTRG00000048689	ERCC6L2	98	90.014	Pan_troglodytes
MGP_PahariEiJ_G0019699	-	91	64.252	ENSPKIG00000016799	ercc6l2	51	59.644	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0019699	-	100	80.409	ENSPSIG00000010627	ERCC6L2	100	80.438	Pelodiscus_sinensis
MGP_PahariEiJ_G0019699	-	83	65.633	ENSPMGG00000016547	ercc6l2	63	57.224	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0019699	-	99	93.411	ENSPEMG00000006631	-	100	89.442	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0019699	-	99	82.456	ENSPCIG00000020095	-	72	71.111	Phascolarctos_cinereus
MGP_PahariEiJ_G0019699	-	99	90.483	ENSPPYG00000019412	-	57	79.953	Pongo_abelii
MGP_PahariEiJ_G0019699	-	100	86.550	ENSPCOG00000026714	ERCC6L2	98	86.143	Propithecus_coquereli
MGP_PahariEiJ_G0019699	-	100	81.312	ENSPVAG00000003926	ERCC6L2	98	81.312	Pteropus_vampyrus
MGP_PahariEiJ_G0019699	-	92	64.103	ENSPNYG00000015347	ercc6l2	58	67.047	Pundamilia_nyererei
MGP_PahariEiJ_G0019699	-	91	67.523	ENSPNAG00000011413	ercc6l2	53	60.083	Pygocentrus_nattereri
MGP_PahariEiJ_G0019699	-	99	96.633	ENSRNOG00000019175	Ercc6l2	55	93.824	Rattus_norvegicus
MGP_PahariEiJ_G0019699	-	100	85.571	ENSRBIG00000018434	ERCC6L2	98	85.571	Rhinopithecus_bieti
MGP_PahariEiJ_G0019699	-	100	89.016	ENSRROG00000029000	ERCC6L2	98	89.016	Rhinopithecus_roxellana
MGP_PahariEiJ_G0019699	-	82	79.587	ENSSHAG00000000781	-	100	79.587	Sarcophilus_harrisii
MGP_PahariEiJ_G0019699	-	99	62.356	ENSSLDG00000018663	ercc6l2	61	63.705	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0019699	-	99	77.599	ENSSPUG00000004336	ERCC6L2	54	75.976	Sphenodon_punctatus
MGP_PahariEiJ_G0019699	-	99	60.776	ENSSPAG00000004484	ercc6l2	60	60.920	Stegastes_partitus
MGP_PahariEiJ_G0019699	-	99	76.979	ENSTGUG00000000524	ERCC6L2	100	76.901	Taeniopygia_guttata
MGP_PahariEiJ_G0019699	-	99	60.086	ENSTRUG00000014634	ercc6l2	64	60.086	Takifugu_rubripes
MGP_PahariEiJ_G0019699	-	82	88.601	ENSTBEG00000014213	ERCC6L2	87	94.231	Tupaia_belangeri
MGP_PahariEiJ_G0019699	-	100	83.452	ENSTTRG00000005372	ERCC6L2	98	83.452	Tursiops_truncatus
MGP_PahariEiJ_G0019699	-	97	88.713	ENSVPAG00000004701	ERCC6L2	99	89.715	Vicugna_pacos
MGP_PahariEiJ_G0019699	-	99	72.607	ENSXETG00000014835	ercc6l2	63	72.607	Xenopus_tropicalis