EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0019735 (Gene tree)
Gene ID: 110334769
Gene Symbol: Pop1
Alias: 4932434G09Rik
Full Name: POP1 homolog%2C ribonuclease P/MRP subunit
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Plus strand
Length: 36418 bases
Position: chr17:1558824-1595241
Accession: 110334769
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0041418	POP1	PF06978.11	2.4e-39	1	2
MGP_PahariEiJ_P0041418	POP1	PF06978.11	2.4e-39	2	2
MGP_PahariEiJ_P0041417	POP1	PF06978.11	2.6e-39	1	2
MGP_PahariEiJ_P0041417	POP1	PF06978.11	2.6e-39	2	2
MGP_PahariEiJ_P0041418	POPLD	PF08170.12	1.3e-26	1	1
MGP_PahariEiJ_P0041417	POPLD	PF08170.12	1.4e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0041419	-	405	-	-	- (aa)	-	-
MGP_PahariEiJ_T0041418	-	3265	XM_021216687	MGP_PahariEiJ_P0041418	1011 (aa)	XP_021072346	UPI000A309F27
MGP_PahariEiJ_T0041417	-	3385	XM_021216686	MGP_PahariEiJ_P0041417	1041 (aa)	XP_021072345	UPI000A306646
MGP_PahariEiJ_T0041420	-	464	-	-	- (aa)	-	-
MGP_PahariEiJ_T0041421	-	785	-	-	- (aa)	-	-
MGP_PahariEiJ_T0041422	-	512	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0019735's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0019735's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0019735	Pop1	100	77.051	ENSG00000104356	POP1	100	86.339	Homo_sapiens
MGP_PahariEiJ_G0019735	Pop1	100	46.000	ENSAPOG00000008198	pop1	100	45.412	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0019735	Pop1	100	72.547	ENSAMEG00000000556	POP1	100	72.547	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0019735	Pop1	90	47.747	ENSACIG00000004169	POP1	100	45.314	Amphilophus_citrinellus
MGP_PahariEiJ_G0019735	Pop1	100	45.437	ENSAOCG00000010991	pop1	100	45.532	Amphiprion_ocellaris
MGP_PahariEiJ_G0019735	Pop1	95	42.843	ENSAPEG00000007607	pop1	99	43.431	Amphiprion_percula
MGP_PahariEiJ_G0019735	Pop1	100	45.014	ENSATEG00000024814	POP1	100	44.633	Anabas_testudineus
MGP_PahariEiJ_G0019735	Pop1	92	59.134	ENSAPLG00000014418	POP1	99	59.134	Anas_platyrhynchos
MGP_PahariEiJ_G0019735	Pop1	99	54.138	ENSACAG00000016083	POP1	100	54.023	Anolis_carolinensis
MGP_PahariEiJ_G0019735	Pop1	89	84.524	ENSANAG00000026360	POP1	99	84.524	Aotus_nancymaae
MGP_PahariEiJ_G0019735	Pop1	100	46.388	ENSACLG00000010951	pop1	100	46.673	Astatotilapia_calliptera
MGP_PahariEiJ_G0019735	Pop1	100	45.598	ENSAMXG00000014483	POP1	100	45.129	Astyanax_mexicanus
MGP_PahariEiJ_G0019735	Pop1	100	73.216	ENSBTAG00000012596	POP1	100	73.412	Bos_taurus
MGP_PahariEiJ_G0019735	Pop1	100	75.879	ENSCJAG00000015567	POP1	100	75.879	Callithrix_jacchus
MGP_PahariEiJ_G0019735	Pop1	100	73.498	ENSCAFG00000000469	POP1	100	73.498	Canis_familiaris
MGP_PahariEiJ_G0019735	Pop1	100	73.509	ENSCAFG00020026765	POP1	100	73.509	Canis_lupus_dingo
MGP_PahariEiJ_G0019735	Pop1	100	72.488	ENSCHIG00000017066	POP1	100	72.825	Capra_hircus
MGP_PahariEiJ_G0019735	Pop1	100	75.977	ENSTSYG00000003097	POP1	100	75.977	Carlito_syrichta
MGP_PahariEiJ_G0019735	Pop1	100	72.417	ENSCAPG00000007251	POP1	100	72.710	Cavia_aperea
MGP_PahariEiJ_G0019735	Pop1	100	74.829	ENSCPOG00000002901	POP1	100	75.122	Cavia_porcellus
MGP_PahariEiJ_G0019735	Pop1	100	75.977	ENSCCAG00000018939	POP1	100	75.977	Cebus_capucinus
MGP_PahariEiJ_G0019735	Pop1	100	76.855	ENSCATG00000040916	POP1	100	76.855	Cercocebus_atys
MGP_PahariEiJ_G0019735	Pop1	100	77.081	ENSCLAG00000007208	POP1	97	77.081	Chinchilla_lanigera
MGP_PahariEiJ_G0019735	Pop1	90	76.681	ENSCSAG00000012340	POP1	99	76.681	Chlorocebus_sabaeus
MGP_PahariEiJ_G0019735	Pop1	95	73.326	ENSCHOG00000011432	POP1	96	80.127	Choloepus_hoffmanni
MGP_PahariEiJ_G0019735	Pop1	100	61.095	ENSCPBG00000006373	POP1	100	61.584	Chrysemys_picta_bellii
MGP_PahariEiJ_G0019735	Pop1	100	76.855	ENSCANG00000001647	POP1	100	76.855	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0019735	Pop1	100	84.600	ENSCGRG00001017308	Pop1	100	84.600	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0019735	Pop1	100	78.578	ENSCGRG00000010824	Pop1	100	78.578	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0019735	Pop1	100	43.678	ENSCSEG00000008737	POP1	100	43.487	Cynoglossus_semilaevis
MGP_PahariEiJ_G0019735	Pop1	100	45.245	ENSCVAG00000022248	pop1	100	45.245	Cyprinodon_variegatus
MGP_PahariEiJ_G0019735	Pop1	100	72.060	ENSDNOG00000019974	POP1	100	72.060	Dasypus_novemcinctus
MGP_PahariEiJ_G0019735	Pop1	100	67.142	ENSDORG00000015384	Pop1	100	67.142	Dipodomys_ordii
MGP_PahariEiJ_G0019735	Pop1	62	33.703	FBgn0026702	l(1)G0045	70	33.596	Drosophila_melanogaster
MGP_PahariEiJ_G0019735	Pop1	89	67.719	ENSETEG00000007839	POP1	88	67.719	Echinops_telfairi
MGP_PahariEiJ_G0019735	Pop1	100	75.293	ENSEASG00005003189	POP1	98	75.293	Equus_asinus_asinus
MGP_PahariEiJ_G0019735	Pop1	100	75.293	ENSECAG00000024236	POP1	100	75.293	Equus_caballus
MGP_PahariEiJ_G0019735	Pop1	67	66.960	ENSEEUG00000003050	-	70	66.960	Erinaceus_europaeus
MGP_PahariEiJ_G0019735	Pop1	100	45.829	ENSELUG00000003526	pop1	100	45.998	Esox_lucius
MGP_PahariEiJ_G0019735	Pop1	100	75.098	ENSFCAG00000002168	POP1	100	75.098	Felis_catus
MGP_PahariEiJ_G0019735	Pop1	100	55.794	ENSFALG00000005711	POP1	100	55.545	Ficedula_albicollis
MGP_PahariEiJ_G0019735	Pop1	100	76.983	ENSFDAG00000017068	POP1	100	76.983	Fukomys_damarensis
MGP_PahariEiJ_G0019735	Pop1	100	45.174	ENSFHEG00000019518	pop1	100	45.217	Fundulus_heteroclitus
MGP_PahariEiJ_G0019735	Pop1	92	44.720	ENSGMOG00000000659	POP1	97	44.720	Gadus_morhua
MGP_PahariEiJ_G0019735	Pop1	100	44.553	ENSGAFG00000019770	POP1	100	44.606	Gambusia_affinis
MGP_PahariEiJ_G0019735	Pop1	100	44.380	ENSGACG00000003499	pop1	100	44.380	Gasterosteus_aculeatus
MGP_PahariEiJ_G0019735	Pop1	100	60.271	ENSGAGG00000011737	POP1	98	60.759	Gopherus_agassizii
MGP_PahariEiJ_G0019735	Pop1	100	76.758	ENSGGOG00000003176	POP1	100	76.758	Gorilla_gorilla
MGP_PahariEiJ_G0019735	Pop1	100	46.863	ENSHBUG00000021583	pop1	100	46.863	Haplochromis_burtoni
MGP_PahariEiJ_G0019735	Pop1	100	75.855	ENSHGLG00000006029	POP1	100	75.855	Heterocephalus_glaber_female
MGP_PahariEiJ_G0019735	Pop1	100	75.855	ENSHGLG00100016879	POP1	100	75.855	Heterocephalus_glaber_male
MGP_PahariEiJ_G0019735	Pop1	90	47.289	ENSHCOG00000013888	pop1	96	46.845	Hippocampus_comes
MGP_PahariEiJ_G0019735	Pop1	99	44.301	ENSIPUG00000018336	pop1	99	43.203	Ictalurus_punctatus
MGP_PahariEiJ_G0019735	Pop1	100	77.865	ENSSTOG00000011455	POP1	97	77.865	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0019735	Pop1	100	74.827	ENSJJAG00000013325	Pop1	100	74.827	Jaculus_jaculus
MGP_PahariEiJ_G0019735	Pop1	100	44.689	ENSKMAG00000001346	POP1	100	44.732	Kryptolebias_marmoratus
MGP_PahariEiJ_G0019735	Pop1	89	46.667	ENSLBEG00000024457	POP1	95	46.517	Labrus_bergylta
MGP_PahariEiJ_G0019735	Pop1	93	55.410	ENSLACG00000012498	POP1	100	55.511	Latimeria_chalumnae
MGP_PahariEiJ_G0019735	Pop1	100	49.709	ENSLOCG00000009817	POP1	100	49.617	Lepisosteus_oculatus
MGP_PahariEiJ_G0019735	Pop1	100	75.331	ENSLAFG00000010770	POP1	100	75.331	Loxodonta_africana
MGP_PahariEiJ_G0019735	Pop1	100	77.148	ENSMFAG00000000347	POP1	100	77.148	Macaca_fascicularis
MGP_PahariEiJ_G0019735	Pop1	100	76.953	ENSMNEG00000036870	POP1	100	76.953	Macaca_nemestrina
MGP_PahariEiJ_G0019735	Pop1	100	76.953	ENSMLEG00000034986	POP1	100	76.953	Mandrillus_leucophaeus
MGP_PahariEiJ_G0019735	Pop1	100	45.507	ENSMAMG00000004040	pop1	100	45.472	Mastacembelus_armatus
MGP_PahariEiJ_G0019735	Pop1	100	46.768	ENSMZEG00005025448	pop1	100	46.768	Maylandia_zebra
MGP_PahariEiJ_G0019735	Pop1	100	55.838	ENSMGAG00000012167	POP1	100	56.109	Meleagris_gallopavo
MGP_PahariEiJ_G0019735	Pop1	100	83.531	ENSMAUG00000017537	Pop1	100	83.238	Mesocricetus_auratus
MGP_PahariEiJ_G0019735	Pop1	100	76.442	ENSMICG00000004361	POP1	100	76.931	Microcebus_murinus
MGP_PahariEiJ_G0019735	Pop1	100	82.967	ENSMOCG00000006356	Pop1	100	83.541	Microtus_ochrogaster
MGP_PahariEiJ_G0019735	Pop1	100	43.053	ENSMMOG00000018242	pop1	100	43.053	Mola_mola
MGP_PahariEiJ_G0019735	Pop1	100	63.041	ENSMODG00000006561	POP1	100	63.715	Monodelphis_domestica
MGP_PahariEiJ_G0019735	Pop1	100	46.242	ENSMALG00000012621	POP1	100	46.388	Monopterus_albus
MGP_PahariEiJ_G0019735	Pop1	100	94.877	MGP_CAROLIEiJ_G0019726	Pop1	100	94.877	Mus_caroli
MGP_PahariEiJ_G0019735	Pop1	100	94.581	ENSMUSG00000022325	Pop1	100	94.581	Mus_musculus
MGP_PahariEiJ_G0019735	Pop1	100	93.990	MGP_SPRETEiJ_G0020622	Pop1	100	93.990	Mus_spretus
MGP_PahariEiJ_G0019735	Pop1	100	73.541	ENSMPUG00000015250	POP1	100	73.541	Mustela_putorius_furo
MGP_PahariEiJ_G0019735	Pop1	100	71.345	ENSMLUG00000010204	POP1	100	71.345	Myotis_lucifugus
MGP_PahariEiJ_G0019735	Pop1	100	81.158	ENSNGAG00000001582	Pop1	100	81.158	Nannospalax_galili
MGP_PahariEiJ_G0019735	Pop1	89	46.696	ENSNBRG00000002356	pop1	94	46.895	Neolamprologus_brichardi
MGP_PahariEiJ_G0019735	Pop1	100	76.855	ENSNLEG00000002541	POP1	100	76.855	Nomascus_leucogenys
MGP_PahariEiJ_G0019735	Pop1	93	57.560	ENSMEUG00000003118	POP1	98	57.664	Notamacropus_eugenii
MGP_PahariEiJ_G0019735	Pop1	100	73.359	ENSOPRG00000007667	POP1	100	73.242	Ochotona_princeps
MGP_PahariEiJ_G0019735	Pop1	100	74.976	ENSODEG00000003984	POP1	100	74.976	Octodon_degus
MGP_PahariEiJ_G0019735	Pop1	100	47.198	ENSONIG00000016445	pop1	100	47.383	Oreochromis_niloticus
MGP_PahariEiJ_G0019735	Pop1	62	68.902	ENSOANG00000001278	-	94	68.902	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0019735	Pop1	100	73.275	ENSOCUG00000017400	POP1	100	73.275	Oryctolagus_cuniculus
MGP_PahariEiJ_G0019735	Pop1	92	47.529	ENSORLG00000002839	pop1	100	45.192	Oryzias_latipes
MGP_PahariEiJ_G0019735	Pop1	91	46.716	ENSORLG00020022450	POP1	98	46.082	Oryzias_latipes_hni
MGP_PahariEiJ_G0019735	Pop1	92	47.794	ENSORLG00015012746	POP1	100	45.946	Oryzias_latipes_hsok
MGP_PahariEiJ_G0019735	Pop1	100	46.394	ENSOMEG00000006915	pop1	99	46.004	Oryzias_melastigma
MGP_PahariEiJ_G0019735	Pop1	100	74.512	ENSOGAG00000001466	POP1	100	74.512	Otolemur_garnettii
MGP_PahariEiJ_G0019735	Pop1	100	76.833	ENSPPAG00000018410	POP1	100	76.833	Pan_paniscus
MGP_PahariEiJ_G0019735	Pop1	100	75.024	ENSPPRG00000005002	POP1	100	75.024	Panthera_pardus
MGP_PahariEiJ_G0019735	Pop1	100	75.220	ENSPTIG00000016527	POP1	100	75.220	Panthera_tigris_altaica
MGP_PahariEiJ_G0019735	Pop1	100	76.953	ENSPTRG00000020458	POP1	100	76.953	Pan_troglodytes
MGP_PahariEiJ_G0019735	Pop1	100	77.224	ENSPANG00000009704	POP1	100	77.224	Papio_anubis
MGP_PahariEiJ_G0019735	Pop1	100	49.614	ENSPKIG00000016325	POP1	100	49.808	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0019735	Pop1	100	60.436	ENSPSIG00000012343	POP1	100	60.322	Pelodiscus_sinensis
MGP_PahariEiJ_G0019735	Pop1	90	48.419	ENSPMGG00000022253	POP1	95	47.468	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0019735	Pop1	99	84.211	ENSPEMG00000023633	Pop1	100	84.211	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0019735	Pop1	90	43.143	ENSPMAG00000003209	POP1	100	43.298	Petromyzon_marinus
MGP_PahariEiJ_G0019735	Pop1	100	63.636	ENSPCIG00000012216	POP1	100	63.830	Phascolarctos_cinereus
MGP_PahariEiJ_G0019735	Pop1	100	45.000	ENSPFOG00000012490	POP1	100	44.498	Poecilia_formosa
MGP_PahariEiJ_G0019735	Pop1	100	45.077	ENSPLAG00000004646	POP1	100	44.573	Poecilia_latipinna
MGP_PahariEiJ_G0019735	Pop1	100	45.446	ENSPMEG00000019592	POP1	100	45.038	Poecilia_mexicana
MGP_PahariEiJ_G0019735	Pop1	100	45.673	ENSPREG00000020951	POP1	100	45.673	Poecilia_reticulata
MGP_PahariEiJ_G0019735	Pop1	100	76.465	ENSPPYG00000018777	POP1	100	76.465	Pongo_abelii
MGP_PahariEiJ_G0019735	Pop1	100	68.915	ENSPCAG00000016662	POP1	100	68.915	Procavia_capensis
MGP_PahariEiJ_G0019735	Pop1	100	76.833	ENSPCOG00000019420	POP1	100	77.028	Propithecus_coquereli
MGP_PahariEiJ_G0019735	Pop1	100	74.341	ENSPVAG00000014468	POP1	100	74.439	Pteropus_vampyrus
MGP_PahariEiJ_G0019735	Pop1	89	47.552	ENSPNYG00000004476	pop1	99	46.585	Pundamilia_nyererei
MGP_PahariEiJ_G0019735	Pop1	100	44.620	ENSPNAG00000000265	pop1	100	43.860	Pygocentrus_nattereri
MGP_PahariEiJ_G0019735	Pop1	100	90.049	ENSRNOG00000005243	Pop1	100	90.049	Rattus_norvegicus
MGP_PahariEiJ_G0019735	Pop1	100	76.953	ENSRBIG00000007996	POP1	100	76.953	Rhinopithecus_bieti
MGP_PahariEiJ_G0019735	Pop1	100	76.953	ENSRROG00000012334	POP1	100	76.953	Rhinopithecus_roxellana
MGP_PahariEiJ_G0019735	Pop1	99	76.285	ENSSBOG00000020830	POP1	100	76.285	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0019735	Pop1	100	62.931	ENSSHAG00000000296	POP1	100	62.931	Sarcophilus_harrisii
MGP_PahariEiJ_G0019735	Pop1	100	48.259	ENSSFOG00015007429	pop1	99	48.066	Scleropages_formosus
MGP_PahariEiJ_G0019735	Pop1	86	49.923	ENSSMAG00000010467	POP1	98	46.138	Scophthalmus_maximus
MGP_PahariEiJ_G0019735	Pop1	100	44.867	ENSSDUG00000007817	POP1	100	45.299	Seriola_dumerili
MGP_PahariEiJ_G0019735	Pop1	100	44.995	ENSSLDG00000012565	POP1	100	45.385	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0019735	Pop1	100	55.479	ENSSPUG00000003550	-	100	56.012	Sphenodon_punctatus
MGP_PahariEiJ_G0019735	Pop1	100	44.727	ENSSPAG00000014955	pop1	100	44.791	Stegastes_partitus
MGP_PahariEiJ_G0019735	Pop1	100	74.533	ENSSSCG00000006078	POP1	100	74.533	Sus_scrofa
MGP_PahariEiJ_G0019735	Pop1	92	54.362	ENSTGUG00000012011	-	100	54.362	Taeniopygia_guttata
MGP_PahariEiJ_G0019735	Pop1	89	46.841	ENSTRUG00000010856	pop1	92	46.046	Takifugu_rubripes
MGP_PahariEiJ_G0019735	Pop1	93	46.543	ENSTNIG00000013297	pop1	100	46.557	Tetraodon_nigroviridis
MGP_PahariEiJ_G0019735	Pop1	95	72.336	ENSTBEG00000014214	POP1	99	72.336	Tupaia_belangeri
MGP_PahariEiJ_G0019735	Pop1	100	72.754	ENSTTRG00000016071	POP1	100	72.852	Tursiops_truncatus
MGP_PahariEiJ_G0019735	Pop1	99	69.891	ENSUAMG00000017309	POP1	100	69.891	Ursus_americanus
MGP_PahariEiJ_G0019735	Pop1	91	84.211	ENSUMAG00000016952	POP1	100	84.211	Ursus_maritimus
MGP_PahariEiJ_G0019735	Pop1	83	84.249	ENSVPAG00000008278	POP1	82	84.249	Vicugna_pacos
MGP_PahariEiJ_G0019735	Pop1	100	73.607	ENSVVUG00000010994	POP1	100	73.607	Vulpes_vulpes
MGP_PahariEiJ_G0019735	Pop1	100	41.160	ENSXCOG00000017043	POP1	100	40.492	Xiphophorus_couchianus
MGP_PahariEiJ_G0019735	Pop1	100	44.573	ENSXMAG00000002472	POP1	100	44.073	Xiphophorus_maculatus