EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0020031 (Gene tree)
Gene ID: 110334948
Gene Symbol: -
Alias: -
Full Name: DNA dC->dU-editing enzyme APOBEC-3-like
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Plus strand
Length: 19899 bases
Position: chr17:45005050-45024948
Accession: 110334948
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0042365	APOBEC_N	PF08210.11	4.5e-81	1	2
MGP_PahariEiJ_P0042365	APOBEC_N	PF08210.11	4.5e-81	2	2
MGP_PahariEiJ_P0042360	APOBEC_N	PF08210.11	5.5e-81	1	2
MGP_PahariEiJ_P0042360	APOBEC_N	PF08210.11	5.5e-81	2	2
MGP_PahariEiJ_P0042363	APOBEC_N	PF08210.11	5.6e-81	1	2
MGP_PahariEiJ_P0042363	APOBEC_N	PF08210.11	5.6e-81	2	2
MGP_PahariEiJ_P0042359	APOBEC_N	PF08210.11	6.2e-81	1	2
MGP_PahariEiJ_P0042359	APOBEC_N	PF08210.11	6.2e-81	2	2
MGP_PahariEiJ_P0042365	APOBEC_C	PF05240.14	4.6e-56	1	2
MGP_PahariEiJ_P0042365	APOBEC_C	PF05240.14	4.6e-56	2	2
MGP_PahariEiJ_P0042360	APOBEC_C	PF05240.14	5.4e-56	1	2
MGP_PahariEiJ_P0042360	APOBEC_C	PF05240.14	5.4e-56	2	2
MGP_PahariEiJ_P0042363	APOBEC_C	PF05240.14	5.5e-56	1	2
MGP_PahariEiJ_P0042363	APOBEC_C	PF05240.14	5.5e-56	2	2
MGP_PahariEiJ_P0042359	APOBEC_C	PF05240.14	5.9e-56	1	2
MGP_PahariEiJ_P0042359	APOBEC_C	PF05240.14	5.9e-56	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0042359	-	1880	-	MGP_PahariEiJ_P0042359	443 (aa)	-	-
MGP_PahariEiJ_T0042358	-	614	-	-	- (aa)	-	-
MGP_PahariEiJ_T0042366	-	731	-	-	- (aa)	-	-
MGP_PahariEiJ_T0042367	-	1942	-	-	- (aa)	-	-
MGP_PahariEiJ_T0042364	-	2266	-	MGP_PahariEiJ_P0042364	397 (aa)	-	-
MGP_PahariEiJ_T0042365	-	1233	XM_021217007	MGP_PahariEiJ_P0042365	410 (aa)	XP_021072666	-
MGP_PahariEiJ_T0042362	-	1226	-	MGP_PahariEiJ_P0042362	46 (aa)	-	-
MGP_PahariEiJ_T0042363	-	2638	-	MGP_PahariEiJ_P0042363	432 (aa)	-	-
MGP_PahariEiJ_T0042360	-	2396	-	MGP_PahariEiJ_P0042360	432 (aa)	XP_021072665	UPI000A3129D7
MGP_PahariEiJ_T0042361	-	699	-	MGP_PahariEiJ_P0042361	79 (aa)	-	-
MGP_PahariEiJ_T0042368	-	719	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0020031's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0020031's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PahariEiJ_G0020031	-	90	40.223	MGP_PahariEiJ_G0022579	Aicda	98	40.223
MGP_PahariEiJ_G0020031	-	75	30.233	MGP_PahariEiJ_G0022580	-	96	30.303
MGP_PahariEiJ_G0020031	-	81	31.818	MGP_PahariEiJ_G0020716	Apobec2	77	31.818

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0020031	-	86	47.340	ENSG00000100298	APOBEC3H	100	48.936	Homo_sapiens
MGP_PahariEiJ_G0020031	-	99	38.166	ENSAMEG00000010818	-	99	38.166	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0020031	-	88	47.120	ENSANAG00000025410	APOBEC3H	93	46.190	Aotus_nancymaae
MGP_PahariEiJ_G0020031	-	93	42.893	ENSBTAG00000007755	APOBEC3H	92	46.685	Bos_taurus
MGP_PahariEiJ_G0020031	-	86	45.699	ENSCJAG00000012524	APOBEC3H	91	45.833	Callithrix_jacchus
MGP_PahariEiJ_G0020031	-	92	44.724	ENSCAFG00000001361	APOBEC3Z3	100	44.724	Canis_familiaris
MGP_PahariEiJ_G0020031	-	90	44.199	ENSCAFG00020002584	-	94	44.624	Canis_lupus_dingo
MGP_PahariEiJ_G0020031	-	89	45.856	ENSCHIG00000026580	-	97	45.856	Capra_hircus
MGP_PahariEiJ_G0020031	-	85	49.721	ENSTSYG00000032894	-	100	49.721	Carlito_syrichta
MGP_PahariEiJ_G0020031	-	97	44.717	ENSCPOG00000009257	-	96	44.717	Cavia_porcellus
MGP_PahariEiJ_G0020031	-	87	48.404	ENSCCAG00000008525	APOBEC3H	99	48.128	Cebus_capucinus
MGP_PahariEiJ_G0020031	-	86	48.925	ENSCATG00000030302	APOBEC3H	100	48.925	Cercocebus_atys
MGP_PahariEiJ_G0020031	-	90	48.744	ENSCLAG00000016615	-	96	48.744	Chinchilla_lanigera
MGP_PahariEiJ_G0020031	-	88	48.293	ENSCSAG00000006371	APOBEC3H	95	48.293	Chlorocebus_sabaeus
MGP_PahariEiJ_G0020031	-	100	67.952	ENSCGRG00001022976	Apobec3	100	67.952	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0020031	-	100	67.952	ENSCGRG00000005621	Apobec3	100	67.952	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0020031	-	97	51.654	ENSDORG00000027271	-	100	56.122	Dipodomys_ordii
MGP_PahariEiJ_G0020031	-	99	46.231	ENSECAG00000007726	APOBEC3H	98	46.231	Equus_caballus
MGP_PahariEiJ_G0020031	-	87	49.246	ENSFCAG00000005251	APOBEC3Z3	99	49.246	Felis_catus
MGP_PahariEiJ_G0020031	-	91	46.842	ENSSTOG00000007125	-	97	48.634	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0020031	-	99	51.282	ENSJJAG00000016840	-	99	47.677	Jaculus_jaculus
MGP_PahariEiJ_G0020031	-	95	43.864	ENSLAFG00000027404	-	99	43.864	Loxodonta_africana
MGP_PahariEiJ_G0020031	-	88	48.293	ENSMFAG00000031827	APOBEC3H	95	48.293	Macaca_fascicularis
MGP_PahariEiJ_G0020031	-	88	48.780	ENSMMUG00000001016	APOBEC3H	95	48.780	Macaca_mulatta
MGP_PahariEiJ_G0020031	-	88	48.293	ENSMNEG00000039259	APOBEC3H	95	48.293	Macaca_nemestrina
MGP_PahariEiJ_G0020031	-	88	48.293	ENSMLEG00000033417	APOBEC3H	95	48.293	Mandrillus_leucophaeus
MGP_PahariEiJ_G0020031	-	100	67.633	ENSMAUG00000011683	Apobec3	100	67.633	Mesocricetus_auratus
MGP_PahariEiJ_G0020031	-	100	63.466	ENSMOCG00000021576	Apobec3	100	64.637	Microtus_ochrogaster
MGP_PahariEiJ_G0020031	-	100	82.278	MGP_CAROLIEiJ_G0020029	Apobec3	100	82.278	Mus_caroli
MGP_PahariEiJ_G0020031	-	100	87.342	ENSMUSG00000009585	Apobec3	100	87.342	Mus_musculus
MGP_PahariEiJ_G0020031	-	100	86.076	MGP_SPRETEiJ_G0020927	Apobec3	100	86.076	Mus_spretus
MGP_PahariEiJ_G0020031	-	95	41.587	ENSMPUG00000013239	-	96	45.052	Mustela_putorius_furo
MGP_PahariEiJ_G0020031	-	100	56.757	ENSNGAG00000018998	Apobec3	99	59.866	Nannospalax_galili
MGP_PahariEiJ_G0020031	-	80	47.317	ENSNLEG00000015218	-	95	47.317	Nomascus_leucogenys
MGP_PahariEiJ_G0020031	-	99	41.832	ENSOCUG00000023913	-	100	42.365	Oryctolagus_cuniculus
MGP_PahariEiJ_G0020031	-	89	45.580	ENSOARG00000016290	APOBEC3F	98	45.580	Ovis_aries
MGP_PahariEiJ_G0020031	-	86	47.340	ENSPPAG00000036522	APOBEC3H	100	48.404	Pan_paniscus
MGP_PahariEiJ_G0020031	-	91	39.623	ENSPPRG00000003675	-	100	39.906	Panthera_pardus
MGP_PahariEiJ_G0020031	-	87	51.000	ENSPPRG00000003941	-	99	51.000	Panthera_pardus
MGP_PahariEiJ_G0020031	-	87	51.000	ENSPTIG00000010283	-	99	51.000	Panthera_tigris_altaica
MGP_PahariEiJ_G0020031	-	86	47.340	ENSPTRG00000014390	APOBEC3H	100	48.404	Pan_troglodytes
MGP_PahariEiJ_G0020031	-	88	49.268	ENSPANG00000010774	APOBEC3H	95	49.268	Papio_anubis
MGP_PahariEiJ_G0020031	-	99	63.348	ENSPEMG00000000456	Apobec3	99	64.027	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0020031	-	85	47.317	ENSPPYG00000011834	-	99	47.115	Pongo_abelii
MGP_PahariEiJ_G0020031	-	77	40.789	ENSPCAG00000015655	-	87	40.789	Procavia_capensis
MGP_PahariEiJ_G0020031	-	62	45.669	ENSPVAG00000024267	-	95	46.094	Pteropus_vampyrus
MGP_PahariEiJ_G0020031	-	89	49.444	ENSPVAG00000009462	-	99	49.444	Pteropus_vampyrus
MGP_PahariEiJ_G0020031	-	62	47.244	ENSPVAG00000024161	-	95	47.656	Pteropus_vampyrus
MGP_PahariEiJ_G0020031	-	98	74.365	ENSRNOG00000016852	Apobec3	100	74.559	Rattus_norvegicus
MGP_PahariEiJ_G0020031	-	88	48.293	ENSRBIG00000029088	APOBEC3H	95	48.293	Rhinopithecus_bieti
MGP_PahariEiJ_G0020031	-	91	47.005	ENSRROG00000024699	APOBEC3H	95	48.293	Rhinopithecus_roxellana
MGP_PahariEiJ_G0020031	-	86	51.075	ENSSBOG00000030005	APOBEC3H	100	52.083	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0020031	-	99	41.805	ENSSSCG00000000091	APOBEC3B	98	41.844	Sus_scrofa
MGP_PahariEiJ_G0020031	-	78	48.701	ENSTBEG00000001532	-	91	48.701	Tupaia_belangeri
MGP_PahariEiJ_G0020031	-	86	46.154	ENSTTRG00000001266	-	100	46.154	Tursiops_truncatus
MGP_PahariEiJ_G0020031	-	86	45.876	ENSUAMG00000004427	-	87	45.178	Ursus_americanus
MGP_PahariEiJ_G0020031	-	87	48.744	ENSUMAG00000014435	-	99	48.744	Ursus_maritimus
MGP_PahariEiJ_G0020031	-	62	46.774	ENSVPAG00000011108	-	98	46.774	Vicugna_pacos