EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0020045 (Gene tree)
Gene ID: 110334677
Gene Symbol: Tnrc6b
Alias: 2700090M07Rik|A730065C02Rik|D230019K20Rik
Full Name: trinucleotide repeat containing 6B
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Plus strand
Length: 228195 bases
Position: chr17:45816332-46044526
Accession: 110334677
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0042403	Ago_hook	PF10427.9	3.2e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0042403	-	16950	-	MGP_PahariEiJ_P0042403	1809 (aa)	XP_021072163	UPI000A3083E3

Gene Model

Click here to download MGP_PahariEiJ_G0020045's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0020045's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PahariEiJ_G0020045	Tnrc6b	98	37.766	MGP_PahariEiJ_G0013635	Tnrc6a	99	39.323
MGP_PahariEiJ_G0020045	Tnrc6b	96	34.724	MGP_PahariEiJ_G0018593	Tnrc6c	99	35.317

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0020045	Tnrc6b	97	92.086	ENSG00000100354	TNRC6B	100	95.165	Homo_sapiens
MGP_PahariEiJ_G0020045	Tnrc6b	99	89.843	ENSAMEG00000011025	TNRC6B	100	89.428	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0020045	Tnrc6b	96	84.580	ENSAPLG00000009347	TNRC6B	99	84.866	Anas_platyrhynchos
MGP_PahariEiJ_G0020045	Tnrc6b	97	72.778	ENSACAG00000007281	TNRC6B	99	73.285	Anolis_carolinensis
MGP_PahariEiJ_G0020045	Tnrc6b	97	93.288	ENSANAG00000035042	TNRC6B	100	94.811	Aotus_nancymaae
MGP_PahariEiJ_G0020045	Tnrc6b	51	47.760	ENSAMXG00000008707	tnrc6b	97	44.402	Astyanax_mexicanus
MGP_PahariEiJ_G0020045	Tnrc6b	98	93.258	ENSBTAG00000021076	TNRC6B	99	93.446	Bos_taurus
MGP_PahariEiJ_G0020045	Tnrc6b	96	94.489	ENSCJAG00000002732	TNRC6B	99	97.746	Callithrix_jacchus
MGP_PahariEiJ_G0020045	Tnrc6b	96	94.346	ENSCAFG00000001255	TNRC6B	99	91.695	Canis_familiaris
MGP_PahariEiJ_G0020045	Tnrc6b	99	94.275	ENSCAFG00020002189	TNRC6B	99	94.259	Canis_lupus_dingo
MGP_PahariEiJ_G0020045	Tnrc6b	99	93.593	ENSCHIG00000003491	TNRC6B	100	93.760	Capra_hircus
MGP_PahariEiJ_G0020045	Tnrc6b	97	93.481	ENSTSYG00000011836	TNRC6B	100	94.104	Carlito_syrichta
MGP_PahariEiJ_G0020045	Tnrc6b	100	95.149	ENSCPOG00000005705	TNRC6B	100	95.204	Cavia_porcellus
MGP_PahariEiJ_G0020045	Tnrc6b	96	93.639	ENSCCAG00000019912	TNRC6B	100	91.981	Cebus_capucinus
MGP_PahariEiJ_G0020045	Tnrc6b	96	94.722	ENSCATG00000029291	TNRC6B	99	94.550	Cercocebus_atys
MGP_PahariEiJ_G0020045	Tnrc6b	100	95.309	ENSCLAG00000016942	TNRC6B	100	95.309	Chinchilla_lanigera
MGP_PahariEiJ_G0020045	Tnrc6b	97	90.904	ENSCSAG00000006021	TNRC6B	99	90.847	Chlorocebus_sabaeus
MGP_PahariEiJ_G0020045	Tnrc6b	89	84.308	ENSCPBG00000022932	TNRC6B	99	84.606	Chrysemys_picta_bellii
MGP_PahariEiJ_G0020045	Tnrc6b	96	94.607	ENSCANG00000030776	TNRC6B	100	94.464	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0020045	Tnrc6b	96	97.135	ENSCGRG00001020166	Tnrc6b	99	97.135	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0020045	Tnrc6b	100	97.185	ENSCGRG00000016696	Tnrc6b	99	97.183	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0020045	Tnrc6b	100	93.836	ENSDNOG00000012744	TNRC6B	100	93.983	Dasypus_novemcinctus
MGP_PahariEiJ_G0020045	Tnrc6b	100	95.419	ENSDORG00000003386	Tnrc6b	100	95.088	Dipodomys_ordii
MGP_PahariEiJ_G0020045	Tnrc6b	97	83.371	ENSETEG00000006570	TNRC6B	99	83.937	Echinops_telfairi
MGP_PahariEiJ_G0020045	Tnrc6b	99	94.749	ENSEASG00005005306	TNRC6B	99	94.534	Equus_asinus_asinus
MGP_PahariEiJ_G0020045	Tnrc6b	100	94.879	ENSECAG00000009759	TNRC6B	99	97.000	Equus_caballus
MGP_PahariEiJ_G0020045	Tnrc6b	55	96.460	ENSEEUG00000008690	-	59	95.604	Erinaceus_europaeus
MGP_PahariEiJ_G0020045	Tnrc6b	100	94.286	ENSFCAG00000004791	TNRC6B	100	94.121	Felis_catus
MGP_PahariEiJ_G0020045	Tnrc6b	93	87.095	ENSFALG00000012195	TNRC6B	100	87.272	Ficedula_albicollis
MGP_PahariEiJ_G0020045	Tnrc6b	100	95.638	ENSFDAG00000021368	TNRC6B	100	95.638	Fukomys_damarensis
MGP_PahariEiJ_G0020045	Tnrc6b	97	88.192	ENSGALG00000012050	TNRC6B	97	88.136	Gallus_gallus
MGP_PahariEiJ_G0020045	Tnrc6b	97	86.873	ENSGAGG00000025188	TNRC6B	98	86.930	Gopherus_agassizii
MGP_PahariEiJ_G0020045	Tnrc6b	97	94.252	ENSGGOG00000008444	TNRC6B	100	94.929	Gorilla_gorilla
MGP_PahariEiJ_G0020045	Tnrc6b	100	94.824	ENSHGLG00000009306	TNRC6B	100	94.548	Heterocephalus_glaber_female
MGP_PahariEiJ_G0020045	Tnrc6b	100	94.809	ENSHGLG00100018108	TNRC6B	100	94.644	Heterocephalus_glaber_male
MGP_PahariEiJ_G0020045	Tnrc6b	79	44.863	ENSIPUG00000001515	tnrc6b	81	45.330	Ictalurus_punctatus
MGP_PahariEiJ_G0020045	Tnrc6b	100	95.254	ENSSTOG00000008927	TNRC6B	100	95.143	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0020045	Tnrc6b	100	95.135	ENSJJAG00000015779	Tnrc6b	100	94.914	Jaculus_jaculus
MGP_PahariEiJ_G0020045	Tnrc6b	98	61.568	ENSLACG00000000628	-	99	62.259	Latimeria_chalumnae
MGP_PahariEiJ_G0020045	Tnrc6b	76	93.895	ENSLAFG00000014473	TNRC6B	100	93.103	Loxodonta_africana
MGP_PahariEiJ_G0020045	Tnrc6b	96	94.997	ENSMFAG00000003862	TNRC6B	99	94.664	Macaca_fascicularis
MGP_PahariEiJ_G0020045	Tnrc6b	100	94.772	ENSMMUG00000021345	TNRC6B	100	94.700	Macaca_mulatta
MGP_PahariEiJ_G0020045	Tnrc6b	97	94.755	ENSMNEG00000042745	TNRC6B	99	94.584	Macaca_nemestrina
MGP_PahariEiJ_G0020045	Tnrc6b	96	94.836	ENSMLEG00000041780	TNRC6B	100	94.700	Mandrillus_leucophaeus
MGP_PahariEiJ_G0020045	Tnrc6b	98	83.887	ENSMGAG00000012333	TNRC6B	99	83.379	Meleagris_gallopavo
MGP_PahariEiJ_G0020045	Tnrc6b	100	96.245	ENSMAUG00000016123	Tnrc6b	100	96.245	Mesocricetus_auratus
MGP_PahariEiJ_G0020045	Tnrc6b	99	93.027	ENSMICG00000014056	TNRC6B	100	94.811	Microcebus_murinus
MGP_PahariEiJ_G0020045	Tnrc6b	97	98.500	ENSMOCG00000020334	Tnrc6b	100	98.500	Microtus_ochrogaster
MGP_PahariEiJ_G0020045	Tnrc6b	100	98.950	MGP_CAROLIEiJ_G0020043	Tnrc6b	100	98.950	Mus_caroli
MGP_PahariEiJ_G0020045	Tnrc6b	100	99.006	ENSMUSG00000047888	Tnrc6b	100	99.006	Mus_musculus
MGP_PahariEiJ_G0020045	Tnrc6b	100	99.227	MGP_SPRETEiJ_G0020941	Tnrc6b	100	99.227	Mus_spretus
MGP_PahariEiJ_G0020045	Tnrc6b	95	96.762	ENSMPUG00000016442	TNRC6B	99	83.280	Mustela_putorius_furo
MGP_PahariEiJ_G0020045	Tnrc6b	97	89.419	ENSMLUG00000008765	TNRC6B	99	89.163	Myotis_lucifugus
MGP_PahariEiJ_G0020045	Tnrc6b	100	95.041	ENSNGAG00000021294	Tnrc6b	100	94.931	Nannospalax_galili
MGP_PahariEiJ_G0020045	Tnrc6b	87	93.103	ENSNLEG00000015311	TNRC6B	100	95.165	Nomascus_leucogenys
MGP_PahariEiJ_G0020045	Tnrc6b	91	85.341	ENSOPRG00000012054	TNRC6B	88	91.266	Ochotona_princeps
MGP_PahariEiJ_G0020045	Tnrc6b	100	95.808	ENSODEG00000013146	TNRC6B	100	95.698	Octodon_degus
MGP_PahariEiJ_G0020045	Tnrc6b	100	93.833	ENSOCUG00000016128	TNRC6B	100	93.667	Oryctolagus_cuniculus
MGP_PahariEiJ_G0020045	Tnrc6b	97	90.203	ENSOGAG00000011096	TNRC6B	99	89.563	Otolemur_garnettii
MGP_PahariEiJ_G0020045	Tnrc6b	100	93.534	ENSOARG00000017238	TNRC6B	100	93.315	Ovis_aries
MGP_PahariEiJ_G0020045	Tnrc6b	96	95.109	ENSPPAG00000028514	TNRC6B	100	95.159	Pan_paniscus
MGP_PahariEiJ_G0020045	Tnrc6b	97	91.408	ENSPPRG00000017741	TNRC6B	100	94.471	Panthera_pardus
MGP_PahariEiJ_G0020045	Tnrc6b	97	86.528	ENSPTIG00000022064	TNRC6B	98	88.404	Panthera_tigris_altaica
MGP_PahariEiJ_G0020045	Tnrc6b	96	94.776	ENSPTRG00000047826	TNRC6B	100	94.929	Pan_troglodytes
MGP_PahariEiJ_G0020045	Tnrc6b	96	86.705	ENSPANG00000009271	TNRC6B	99	91.935	Papio_anubis
MGP_PahariEiJ_G0020045	Tnrc6b	97	86.866	ENSPSIG00000005318	TNRC6B	99	86.979	Pelodiscus_sinensis
MGP_PahariEiJ_G0020045	Tnrc6b	100	97.242	ENSPEMG00000011403	Tnrc6b	100	97.242	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0020045	Tnrc6b	97	85.966	ENSPCIG00000020347	TNRC6B	99	86.080	Phascolarctos_cinereus
MGP_PahariEiJ_G0020045	Tnrc6b	67	45.597	ENSPFOG00000006033	-	95	41.964	Poecilia_formosa
MGP_PahariEiJ_G0020045	Tnrc6b	97	91.860	ENSPPYG00000011849	TNRC6B	99	92.142	Pongo_abelii
MGP_PahariEiJ_G0020045	Tnrc6b	77	87.706	ENSPCAG00000008739	TNRC6B	77	88.355	Procavia_capensis
MGP_PahariEiJ_G0020045	Tnrc6b	99	93.600	ENSPCOG00000020790	TNRC6B	100	95.283	Propithecus_coquereli
MGP_PahariEiJ_G0020045	Tnrc6b	93	93.780	ENSPVAG00000004975	TNRC6B	94	93.780	Pteropus_vampyrus
MGP_PahariEiJ_G0020045	Tnrc6b	63	48.446	ENSPNAG00000011713	tnrc6b	78	44.938	Pygocentrus_nattereri
MGP_PahariEiJ_G0020045	Tnrc6b	100	97.802	ENSRNOG00000024907	Tnrc6b	100	97.802	Rattus_norvegicus
MGP_PahariEiJ_G0020045	Tnrc6b	95	94.640	ENSRBIG00000035576	TNRC6B	99	94.582	Rhinopithecus_bieti
MGP_PahariEiJ_G0020045	Tnrc6b	97	94.641	ENSRROG00000031135	TNRC6B	100	94.582	Rhinopithecus_roxellana
MGP_PahariEiJ_G0020045	Tnrc6b	97	91.733	ENSSBOG00000029743	TNRC6B	99	92.018	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0020045	Tnrc6b	97	82.106	ENSSHAG00000009692	TNRC6B	99	80.989	Sarcophilus_harrisii
MGP_PahariEiJ_G0020045	Tnrc6b	65	84.746	ENSSARG00000007971	-	70	84.746	Sorex_araneus
MGP_PahariEiJ_G0020045	Tnrc6b	100	94.053	ENSSSCG00000000078	TNRC6B	99	93.951	Sus_scrofa
MGP_PahariEiJ_G0020045	Tnrc6b	100	88.711	ENSTTRG00000011465	TNRC6B	100	88.822	Tursiops_truncatus
MGP_PahariEiJ_G0020045	Tnrc6b	100	92.605	ENSUAMG00000007174	TNRC6B	98	94.087	Ursus_americanus
MGP_PahariEiJ_G0020045	Tnrc6b	97	94.238	ENSUMAG00000014336	TNRC6B	100	93.920	Ursus_maritimus
MGP_PahariEiJ_G0020045	Tnrc6b	69	89.293	ENSVPAG00000001467	TNRC6B	75	88.081	Vicugna_pacos
MGP_PahariEiJ_G0020045	Tnrc6b	100	94.331	ENSVVUG00000007064	TNRC6B	100	94.429	Vulpes_vulpes