EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0020486 (Gene tree)
Gene ID: 110335423
Gene Symbol: Vars
Alias: Bat-6|Bat6|D17H6S56E|G7a|Vars2
Full Name: valyl-tRNA synthetase
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Plus strand
Length: 14816 bases
Position: chr18:2922149-2936964
Accession: 110335423
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0043916	tRNA-synt_1g	PF09334.11	5.6e-11	1	1
MGP_PahariEiJ_P0043917	tRNA-synt_1g	PF09334.11	6.1e-11	1	1
MGP_PahariEiJ_P0043916	Anticodon_1	PF08264.13	1.2e-32	1	1
MGP_PahariEiJ_P0043917	Anticodon_1	PF08264.13	1.8e-32	1	1
MGP_PahariEiJ_P0043916	tRNA-synt_1	PF00133.22	1.1e-201	1	1
MGP_PahariEiJ_P0043917	tRNA-synt_1	PF00133.22	1.1e-201	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0043923	-	753	-	-	- (aa)	-	-
MGP_PahariEiJ_T0043922	-	347	-	-	- (aa)	-	-
MGP_PahariEiJ_T0043921	-	480	-	-	- (aa)	-	-
MGP_PahariEiJ_T0043920	-	3734	-	-	- (aa)	-	-
MGP_PahariEiJ_T0043927	-	735	-	-	- (aa)	-	-
MGP_PahariEiJ_T0043926	-	388	-	MGP_PahariEiJ_P0043926	129 (aa)	-	-
MGP_PahariEiJ_T0043925	-	807	-	-	- (aa)	-	-
MGP_PahariEiJ_T0043924	-	557	-	-	- (aa)	-	-
MGP_PahariEiJ_T0043928	-	833	-	-	- (aa)	-	-
MGP_PahariEiJ_T0043918	-	823	-	MGP_PahariEiJ_P0043918	230 (aa)	-	-
MGP_PahariEiJ_T0043919	-	417	-	MGP_PahariEiJ_P0043919	125 (aa)	-	-
MGP_PahariEiJ_T0043916	-	4151	XM_021217564	MGP_PahariEiJ_P0043916	1263 (aa)	XP_021073223	UPI000A307222
MGP_PahariEiJ_T0043917	-	4070	-	MGP_PahariEiJ_P0043917	1281 (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0020486's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0020486's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PahariEiJ_G0020486	Vars	82	51.007	MGP_PahariEiJ_G0020523	Vars2	92	53.028

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0020486	Vars	100	92.009	ENSG00000204394	VARS	100	93.103	Homo_sapiens
MGP_PahariEiJ_G0020486	Vars	98	64.446	ENSAPOG00000020691	vars	99	64.125	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0020486	Vars	98	64.446	ENSAPOG00000020921	vars	99	64.125	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0020486	Vars	100	92.490	ENSAMEG00000006417	VARS	100	92.569	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0020486	Vars	100	65.224	ENSACIG00000013752	vars	100	65.224	Amphilophus_citrinellus
MGP_PahariEiJ_G0020486	Vars	100	64.848	ENSAOCG00000002447	vars	100	64.016	Amphiprion_ocellaris
MGP_PahariEiJ_G0020486	Vars	100	64.770	ENSAPEG00000010638	vars	99	64.770	Amphiprion_percula
MGP_PahariEiJ_G0020486	Vars	100	64.539	ENSATEG00000020219	vars	100	64.224	Anabas_testudineus
MGP_PahariEiJ_G0020486	Vars	90	71.144	ENSACAG00000029133	-	99	71.144	Anolis_carolinensis
MGP_PahariEiJ_G0020486	Vars	100	92.009	ENSANAG00000015453	VARS	100	92.405	Aotus_nancymaae
MGP_PahariEiJ_G0020486	Vars	100	64.619	ENSACLG00000025699	vars	97	64.619	Astatotilapia_calliptera
MGP_PahariEiJ_G0020486	Vars	94	66.611	ENSAMXG00000017716	vars	95	66.611	Astyanax_mexicanus
MGP_PahariEiJ_G0020486	Vars	100	92.247	ENSBTAG00000005631	VARS	100	92.642	Bos_taurus
MGP_PahariEiJ_G0020486	Vars	100	91.772	ENSCJAG00000002604	VARS	100	92.168	Callithrix_jacchus
MGP_PahariEiJ_G0020486	Vars	100	92.168	ENSCAFG00000000636	VARS	100	92.247	Canis_familiaris
MGP_PahariEiJ_G0020486	Vars	94	92.145	ENSCAFG00020020790	VARS	96	92.230	Canis_lupus_dingo
MGP_PahariEiJ_G0020486	Vars	100	92.326	ENSCHIG00000011008	VARS	100	92.722	Capra_hircus
MGP_PahariEiJ_G0020486	Vars	100	92.484	ENSTSYG00000001567	VARS	100	92.880	Carlito_syrichta
MGP_PahariEiJ_G0020486	Vars	91	90.484	ENSCAPG00000013736	VARS	99	90.484	Cavia_aperea
MGP_PahariEiJ_G0020486	Vars	100	91.456	ENSCPOG00000000870	VARS	100	91.139	Cavia_porcellus
MGP_PahariEiJ_G0020486	Vars	100	92.722	ENSCCAG00000035656	VARS	100	94.030	Cebus_capucinus
MGP_PahariEiJ_G0020486	Vars	100	92.880	ENSCATG00000022394	VARS	100	92.484	Cercocebus_atys
MGP_PahariEiJ_G0020486	Vars	93	86.562	ENSCLAG00000009470	VARS	96	86.232	Chinchilla_lanigera
MGP_PahariEiJ_G0020486	Vars	100	93.117	ENSCSAG00000008784	VARS	100	92.722	Chlorocebus_sabaeus
MGP_PahariEiJ_G0020486	Vars	77	74.333	ENSCPBG00000007943	VARS	96	74.333	Chrysemys_picta_bellii
MGP_PahariEiJ_G0020486	Vars	100	93.117	ENSCANG00000033570	VARS	100	92.722	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0020486	Vars	100	94.620	ENSCGRG00001005686	Vars	100	94.937	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0020486	Vars	92	89.112	ENSCGRG00000013352	Vars	78	89.950	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0020486	Vars	100	64.478	ENSCSEG00000019652	vars	100	64.478	Cynoglossus_semilaevis
MGP_PahariEiJ_G0020486	Vars	100	65.552	ENSCVAG00000022398	vars	100	65.552	Cyprinodon_variegatus
MGP_PahariEiJ_G0020486	Vars	100	65.058	ENSDARG00000044575	vars	100	65.447	Danio_rerio
MGP_PahariEiJ_G0020486	Vars	84	92.192	ENSDORG00000016433	Vars	95	92.192	Dipodomys_ordii
MGP_PahariEiJ_G0020486	Vars	68	85.714	ENSETEG00000003824	VARS	76	85.714	Echinops_telfairi
MGP_PahariEiJ_G0020486	Vars	57	62.363	ENSEBUG00000004637	vars	100	62.637	Eptatretus_burgeri
MGP_PahariEiJ_G0020486	Vars	50	71.273	ENSEBUG00000007086	vars	84	70.105	Eptatretus_burgeri
MGP_PahariEiJ_G0020486	Vars	100	93.038	ENSEASG00005015673	VARS	100	93.434	Equus_asinus_asinus
MGP_PahariEiJ_G0020486	Vars	100	92.885	ENSECAG00000014620	VARS	100	93.518	Equus_caballus
MGP_PahariEiJ_G0020486	Vars	78	91.638	ENSEEUG00000004116	VARS	80	91.638	Erinaceus_europaeus
MGP_PahariEiJ_G0020486	Vars	100	64.302	ENSELUG00000006550	vars	97	64.456	Esox_lucius
MGP_PahariEiJ_G0020486	Vars	100	92.009	ENSFCAG00000004510	VARS	100	92.247	Felis_catus
MGP_PahariEiJ_G0020486	Vars	82	91.856	ENSFDAG00000011401	VARS	100	91.856	Fukomys_damarensis
MGP_PahariEiJ_G0020486	Vars	100	65.630	ENSFHEG00000010672	vars	100	65.708	Fundulus_heteroclitus
MGP_PahariEiJ_G0020486	Vars	92	66.555	ENSGMOG00000014908	vars	97	66.639	Gadus_morhua
MGP_PahariEiJ_G0020486	Vars	100	65.810	ENSGAFG00000021630	vars	100	65.810	Gambusia_affinis
MGP_PahariEiJ_G0020486	Vars	92	66.415	ENSGACG00000009601	vars	98	66.055	Gasterosteus_aculeatus
MGP_PahariEiJ_G0020486	Vars	50	64.399	ENSGAGG00000006508	-	91	64.241	Gopherus_agassizii
MGP_PahariEiJ_G0020486	Vars	100	92.959	ENSGGOG00000011364	VARS	100	92.563	Gorilla_gorilla
MGP_PahariEiJ_G0020486	Vars	100	64.619	ENSHBUG00000017151	vars	97	64.619	Haplochromis_burtoni
MGP_PahariEiJ_G0020486	Vars	100	91.370	ENSHGLG00000011646	VARS	100	91.370	Heterocephalus_glaber_female
MGP_PahariEiJ_G0020486	Vars	93	83.209	ENSHGLG00100018062	VARS	100	83.042	Heterocephalus_glaber_male
MGP_PahariEiJ_G0020486	Vars	99	64.798	ENSHCOG00000012198	vars	99	64.899	Hippocampus_comes
MGP_PahariEiJ_G0020486	Vars	100	65.370	ENSIPUG00000005218	vars	100	65.525	Ictalurus_punctatus
MGP_PahariEiJ_G0020486	Vars	100	93.755	ENSSTOG00000013112	VARS	100	93.360	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0020486	Vars	100	91.845	ENSJJAG00000019749	-	100	91.845	Jaculus_jaculus
MGP_PahariEiJ_G0020486	Vars	100	72.922	ENSJJAG00000015343	-	100	73.159	Jaculus_jaculus
MGP_PahariEiJ_G0020486	Vars	100	65.613	ENSKMAG00000009455	vars	100	65.692	Kryptolebias_marmoratus
MGP_PahariEiJ_G0020486	Vars	100	64.664	ENSLBEG00000010341	vars	100	64.427	Labrus_bergylta
MGP_PahariEiJ_G0020486	Vars	94	62.120	ENSLACG00000015232	VARS	99	62.531	Latimeria_chalumnae
MGP_PahariEiJ_G0020486	Vars	100	66.719	ENSLOCG00000004240	vars	100	66.797	Lepisosteus_oculatus
MGP_PahariEiJ_G0020486	Vars	100	92.320	ENSLAFG00000023090	VARS	100	92.320	Loxodonta_africana
MGP_PahariEiJ_G0020486	Vars	100	93.117	ENSMFAG00000001032	VARS	100	92.722	Macaca_fascicularis
MGP_PahariEiJ_G0020486	Vars	100	93.117	ENSMMUG00000006828	VARS	100	92.722	Macaca_mulatta
MGP_PahariEiJ_G0020486	Vars	100	93.275	ENSMNEG00000042072	VARS	100	92.880	Macaca_nemestrina
MGP_PahariEiJ_G0020486	Vars	100	93.196	ENSMLEG00000039307	VARS	100	92.801	Mandrillus_leucophaeus
MGP_PahariEiJ_G0020486	Vars	100	64.926	ENSMAMG00000003949	vars	100	64.949	Mastacembelus_armatus
MGP_PahariEiJ_G0020486	Vars	100	64.619	ENSMZEG00005018327	vars	100	64.139	Maylandia_zebra
MGP_PahariEiJ_G0020486	Vars	100	93.829	ENSMAUG00000006715	Vars	100	94.225	Mesocricetus_auratus
MGP_PahariEiJ_G0020486	Vars	100	92.247	ENSMICG00000003548	VARS	100	93.532	Microcebus_murinus
MGP_PahariEiJ_G0020486	Vars	100	92.953	ENSMOCG00000015404	Vars	100	92.953	Microtus_ochrogaster
MGP_PahariEiJ_G0020486	Vars	100	64.280	ENSMMOG00000015801	vars	100	64.123	Mola_mola
MGP_PahariEiJ_G0020486	Vars	100	85.918	ENSMODG00000015204	-	100	85.443	Monodelphis_domestica
MGP_PahariEiJ_G0020486	Vars	99	64.724	ENSMALG00000022532	vars	99	64.724	Monopterus_albus
MGP_PahariEiJ_G0020486	Vars	100	98.575	MGP_CAROLIEiJ_G0021491	Vars	100	98.575	Mus_caroli
MGP_PahariEiJ_G0020486	Vars	100	98.812	ENSMUSG00000007029	Vars	100	98.812	Mus_musculus
MGP_PahariEiJ_G0020486	Vars	100	98.892	MGP_SPRETEiJ_G0022396	Vars	100	98.892	Mus_spretus
MGP_PahariEiJ_G0020486	Vars	100	92.405	ENSMPUG00000010821	VARS	100	92.484	Mustela_putorius_furo
MGP_PahariEiJ_G0020486	Vars	78	92.510	ENSMLUG00000013126	VARS	100	92.510	Myotis_lucifugus
MGP_PahariEiJ_G0020486	Vars	100	93.983	ENSNGAG00000012151	Vars	100	93.983	Nannospalax_galili
MGP_PahariEiJ_G0020486	Vars	100	64.386	ENSNBRG00000020520	vars	100	64.386	Neolamprologus_brichardi
MGP_PahariEiJ_G0020486	Vars	100	91.693	ENSNLEG00000006351	VARS	100	92.089	Nomascus_leucogenys
MGP_PahariEiJ_G0020486	Vars	100	82.437	ENSMEUG00000011378	VARS	100	82.832	Notamacropus_eugenii
MGP_PahariEiJ_G0020486	Vars	100	92.801	ENSOPRG00000003607	VARS	100	93.196	Ochotona_princeps
MGP_PahariEiJ_G0020486	Vars	100	91.607	ENSODEG00000017681	VARS	100	91.607	Octodon_degus
MGP_PahariEiJ_G0020486	Vars	100	65.098	ENSONIG00000013064	vars	99	67.972	Oreochromis_niloticus
MGP_PahariEiJ_G0020486	Vars	77	78.359	ENSOANG00000005400	VARS	98	78.121	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0020486	Vars	100	90.751	ENSOCUG00000022463	VARS	100	90.514	Oryctolagus_cuniculus
MGP_PahariEiJ_G0020486	Vars	100	65.328	ENSORLG00000013063	vars	100	65.405	Oryzias_latipes
MGP_PahariEiJ_G0020486	Vars	100	65.787	ENSORLG00020003504	vars	100	65.865	Oryzias_latipes_hni
MGP_PahariEiJ_G0020486	Vars	100	65.761	ENSORLG00015009001	vars	100	65.761	Oryzias_latipes_hsok
MGP_PahariEiJ_G0020486	Vars	100	65.683	ENSOMEG00000015016	vars	100	65.683	Oryzias_melastigma
MGP_PahariEiJ_G0020486	Vars	100	93.117	ENSOGAG00000007515	VARS	100	92.722	Otolemur_garnettii
MGP_PahariEiJ_G0020486	Vars	100	92.247	ENSPPAG00000034012	VARS	100	92.642	Pan_paniscus
MGP_PahariEiJ_G0020486	Vars	100	92.168	ENSPPRG00000014855	VARS	100	92.405	Panthera_pardus
MGP_PahariEiJ_G0020486	Vars	85	92.286	ENSPTIG00000010462	VARS	95	93.040	Panthera_tigris_altaica
MGP_PahariEiJ_G0020486	Vars	100	92.326	ENSPTRG00000017985	VARS	100	92.722	Pan_troglodytes
MGP_PahariEiJ_G0020486	Vars	100	91.483	ENSPANG00000014565	VARS	100	91.088	Papio_anubis
MGP_PahariEiJ_G0020486	Vars	100	64.065	ENSPKIG00000016304	vars	100	64.065	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0020486	Vars	100	65.904	ENSPMGG00000023909	vars	100	65.904	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0020486	Vars	100	95.174	ENSPEMG00000006639	Vars	100	95.570	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0020486	Vars	100	85.601	ENSPCIG00000018553	VARS	100	85.127	Phascolarctos_cinereus
MGP_PahariEiJ_G0020486	Vars	100	65.810	ENSPFOG00000015690	vars	100	65.810	Poecilia_formosa
MGP_PahariEiJ_G0020486	Vars	100	66.063	ENSPLAG00000009590	vars	100	66.063	Poecilia_latipinna
MGP_PahariEiJ_G0020486	Vars	100	65.810	ENSPMEG00000004708	vars	100	65.810	Poecilia_mexicana
MGP_PahariEiJ_G0020486	Vars	100	64.145	ENSPREG00000013264	vars	100	63.815	Poecilia_reticulata
MGP_PahariEiJ_G0020486	Vars	100	91.297	ENSPPYG00000016460	VARS	100	91.297	Pongo_abelii
MGP_PahariEiJ_G0020486	Vars	86	91.203	ENSPCAG00000013565	VARS	86	91.203	Procavia_capensis
MGP_PahariEiJ_G0020486	Vars	100	92.411	ENSPCOG00000010942	VARS	100	93.043	Propithecus_coquereli
MGP_PahariEiJ_G0020486	Vars	100	89.399	ENSPVAG00000012403	VARS	100	89.399	Pteropus_vampyrus
MGP_PahariEiJ_G0020486	Vars	100	64.619	ENSPNYG00000022511	vars	100	64.619	Pundamilia_nyererei
MGP_PahariEiJ_G0020486	Vars	100	65.244	ENSPNAG00000020962	vars	100	65.221	Pygocentrus_nattereri
MGP_PahariEiJ_G0020486	Vars	100	97.706	ENSRNOG00000000867	Vars	100	97.706	Rattus_norvegicus
MGP_PahariEiJ_G0020486	Vars	100	93.038	ENSRBIG00000041669	VARS	100	92.642	Rhinopithecus_bieti
MGP_PahariEiJ_G0020486	Vars	100	93.038	ENSRROG00000045490	VARS	100	92.642	Rhinopithecus_roxellana
MGP_PahariEiJ_G0020486	Vars	100	91.851	ENSSBOG00000035402	VARS	100	92.247	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0020486	Vars	100	80.863	ENSSHAG00000006937	VARS	100	80.706	Sarcophilus_harrisii
MGP_PahariEiJ_G0020486	Vars	100	65.224	ENSSFOG00015014272	vars	100	65.224	Scleropages_formosus
MGP_PahariEiJ_G0020486	Vars	100	63.898	ENSSMAG00000009596	vars	99	63.975	Scophthalmus_maximus
MGP_PahariEiJ_G0020486	Vars	100	64.596	ENSSDUG00000014177	vars	100	64.596	Seriola_dumerili
MGP_PahariEiJ_G0020486	Vars	100	64.596	ENSSLDG00000025316	vars	100	64.596	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0020486	Vars	100	64.926	ENSSPAG00000017068	vars	100	64.848	Stegastes_partitus
MGP_PahariEiJ_G0020486	Vars	100	91.858	ENSSSCG00000038950	VARS	100	92.490	Sus_scrofa
MGP_PahariEiJ_G0020486	Vars	82	64.491	ENSTRUG00000012307	vars	98	64.272	Takifugu_rubripes
MGP_PahariEiJ_G0020486	Vars	100	65.020	ENSTNIG00000008011	vars	100	65.020	Tetraodon_nigroviridis
MGP_PahariEiJ_G0020486	Vars	53	95.506	ENSTBEG00000004728	-	60	95.506	Tupaia_belangeri
MGP_PahariEiJ_G0020486	Vars	100	84.731	ENSTTRG00000014128	VARS	100	84.652	Tursiops_truncatus
MGP_PahariEiJ_G0020486	Vars	100	88.522	ENSUAMG00000010424	VARS	100	88.698	Ursus_americanus
MGP_PahariEiJ_G0020486	Vars	93	91.429	ENSUMAG00000013486	VARS	98	91.587	Ursus_maritimus
MGP_PahariEiJ_G0020486	Vars	100	92.332	ENSVVUG00000021323	VARS	100	92.411	Vulpes_vulpes
MGP_PahariEiJ_G0020486	Vars	96	62.915	ENSXETG00000024076	vars	98	62.915	Xenopus_tropicalis
MGP_PahariEiJ_G0020486	Vars	100	65.800	ENSXCOG00000019172	vars	100	65.800	Xiphophorus_couchianus
MGP_PahariEiJ_G0020486	Vars	100	65.654	ENSXMAG00000010927	vars	100	65.654	Xiphophorus_maculatus