EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0020513 (Gene tree)
Gene ID: 110335531
Gene Symbol: Ddx39b
Alias: 0610030D10Rik|Bat-1|Bat1|Bat1a|D17H6S81E-1
Full Name: DExD-box helicase 39B
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Plus strand
Length: 11868 bases
Position: chr18:3169870-3181737
Accession: 110335531
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0044035	ResIII	PF04851.15	8.7e-08	1	1
MGP_PahariEiJ_P0044034	ResIII	PF04851.15	2.2e-07	1	1
MGP_PahariEiJ_P0044037	ResIII	PF04851.15	2.2e-07	1	1
MGP_PahariEiJ_P0044039	ResIII	PF04851.15	2.2e-07	1	1
MGP_PahariEiJ_P0044034	DEAD	PF00270.29	1.1e-38	1	1
MGP_PahariEiJ_P0044037	DEAD	PF00270.29	1.1e-38	1	1
MGP_PahariEiJ_P0044039	DEAD	PF00270.29	1.1e-38	1	1
MGP_PahariEiJ_P0044035	DEAD	PF00270.29	3.9e-34	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0044034	-	1764	XM_021217703	MGP_PahariEiJ_P0044034	428 (aa)	XP_021073362	UPI000000D4A2
MGP_PahariEiJ_T0044035	-	759	-	MGP_PahariEiJ_P0044035	148 (aa)	-	UPI00021CF7FB
MGP_PahariEiJ_T0044036	-	1706	-	-	- (aa)	-	-
MGP_PahariEiJ_T0044037	-	2886	-	MGP_PahariEiJ_P0044037	428 (aa)	-	UPI000000D4A2
MGP_PahariEiJ_T0044038	-	750	-	-	- (aa)	-	-
MGP_PahariEiJ_T0044039	-	1771	-	MGP_PahariEiJ_P0044039	428 (aa)	-	UPI000000D4A2

Gene Model

Click here to download MGP_PahariEiJ_G0020513's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0020513's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PahariEiJ_G0020513	Ddx39b	99	36.424	MGP_PahariEiJ_G0026142	Ddx27	54	32.452
MGP_PahariEiJ_G0020513	Ddx39b	99	31.792	MGP_PahariEiJ_G0031487	Ddx3x	56	30.105
MGP_PahariEiJ_G0020513	Ddx39b	99	36.486	MGP_PahariEiJ_G0022748	Ddx47	84	33.141
MGP_PahariEiJ_G0020513	Ddx39b	99	40.816	MGP_PahariEiJ_G0016317	Eif4a2	90	38.298
MGP_PahariEiJ_G0020513	Ddx39b	99	37.415	MGP_PahariEiJ_G0018622	-	88	38.356
MGP_PahariEiJ_G0020513	Ddx39b	99	36.667	MGP_PahariEiJ_G0021604	Ddx49	78	32.891
MGP_PahariEiJ_G0020513	Ddx39b	99	31.792	MGP_PahariEiJ_G0028260	D1Pas1	57	30.105
MGP_PahariEiJ_G0020513	Ddx39b	99	34.641	MGP_PahariEiJ_G0018444	-	51	30.685
MGP_PahariEiJ_G0020513	Ddx39b	99	34.014	MGP_PahariEiJ_G0014991	Ddx6	79	35.659
MGP_PahariEiJ_G0020513	Ddx39b	72	32.979	MGP_PahariEiJ_G0023166	-	80	32.979
MGP_PahariEiJ_G0020513	Ddx39b	100	90.888	MGP_PahariEiJ_G0022883	Ddx39	100	90.888
MGP_PahariEiJ_G0020513	Ddx39b	99	35.135	MGP_PahariEiJ_G0014821	Ddx25	82	32.020

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSG00000198563	DDX39B	100	99.533	Homo_sapiens
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSAMEG00000009508	DDX39B	99	99.299	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0020513	Ddx39b	100	96.622	ENSACIG00000004534	ddx39b	98	93.443	Amphilophus_citrinellus
MGP_PahariEiJ_G0020513	Ddx39b	100	95.946	ENSATEG00000012366	ddx39b	100	92.593	Anabas_testudineus
MGP_PahariEiJ_G0020513	Ddx39b	100	99.324	ENSACAG00000012240	DDX39B	100	96.970	Anolis_carolinensis
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSANAG00000030372	DDX39B	100	99.533	Aotus_nancymaae
MGP_PahariEiJ_G0020513	Ddx39b	100	94.595	ENSACLG00000018759	ddx39b	99	90.553	Astatotilapia_calliptera
MGP_PahariEiJ_G0020513	Ddx39b	100	95.270	ENSAMXG00000017837	ddx39b	100	92.661	Astyanax_mexicanus
MGP_PahariEiJ_G0020513	Ddx39b	100	99.324	ENSBTAG00000014490	DDX39B	100	99.299	Bos_taurus
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSCJAG00000003152	DDX39B	100	99.533	Callithrix_jacchus
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSCAFG00000000509	DDX39B	100	100.000	Canis_familiaris
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSCAFG00020020530	DDX39B	100	99.299	Canis_lupus_dingo
MGP_PahariEiJ_G0020513	Ddx39b	100	99.324	ENSCHIG00000004579	DDX39B	100	99.299	Capra_hircus
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSTSYG00000010226	-	100	99.533	Carlito_syrichta
MGP_PahariEiJ_G0020513	Ddx39b	100	91.216	ENSTSYG00000029741	-	91	87.619	Carlito_syrichta
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSCAPG00000010066	DDX39B	100	99.299	Cavia_aperea
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSCPOG00000002335	DDX39B	100	99.299	Cavia_porcellus
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSCCAG00000027897	DDX39B	100	99.533	Cebus_capucinus
MGP_PahariEiJ_G0020513	Ddx39b	98	93.793	ENSCATG00000043709	DDX39B	99	89.882	Cercocebus_atys
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSCLAG00000014555	DDX39B	100	99.299	Chinchilla_lanigera
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSCSAG00000008517	DDX39B	100	99.294	Chlorocebus_sabaeus
MGP_PahariEiJ_G0020513	Ddx39b	64	100.000	ENSCPBG00000014671	-	100	100.000	Chrysemys_picta_bellii
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSCANG00000041217	DDX39B	100	99.533	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0020513	Ddx39b	83	96.774	ENSCGRG00001021916	-	89	84.358	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0020513	Ddx39b	100	99.324	ENSCGRG00001017315	-	95	99.029	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0020513	Ddx39b	83	98.374	ENSCGRG00000000078	-	90	98.537	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0020513	Ddx39b	100	99.324	ENSCGRG00000012479	-	76	99.184	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0020513	Ddx39b	100	95.946	ENSDARG00000036069	ddx39b	100	92.184	Danio_rerio
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSDNOG00000010215	DDX39B	100	99.533	Dasypus_novemcinctus
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSDORG00000004985	Ddx39b	100	99.198	Dipodomys_ordii
MGP_PahariEiJ_G0020513	Ddx39b	100	99.324	ENSETEG00000009649	DDX39B	87	86.364	Echinops_telfairi
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSEASG00005017156	DDX39B	100	99.533	Equus_asinus_asinus
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSECAG00000007750	DDX39B	100	99.533	Equus_caballus
MGP_PahariEiJ_G0020513	Ddx39b	100	93.919	ENSELUG00000017904	ddx39b	100	91.860	Esox_lucius
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSFCAG00000004497	DDX39B	100	99.299	Felis_catus
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSFDAG00000011074	DDX39B	100	99.299	Fukomys_damarensis
MGP_PahariEiJ_G0020513	Ddx39b	80	99.153	ENSGAGG00000001300	-	80	99.684	Gopherus_agassizii
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSGGOG00000005989	DDX39B	100	99.533	Gorilla_gorilla
MGP_PahariEiJ_G0020513	Ddx39b	83	92.683	ENSHBUG00000022054	-	77	87.560	Haplochromis_burtoni
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSHGLG00000019248	DDX39B	100	99.299	Heterocephalus_glaber_female
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSHGLG00100011850	DDX39B	100	99.299	Heterocephalus_glaber_male
MGP_PahariEiJ_G0020513	Ddx39b	100	94.595	ENSIPUG00000015733	DDX39B	94	91.514	Ictalurus_punctatus
MGP_PahariEiJ_G0020513	Ddx39b	100	99.324	ENSSTOG00000012838	DDX39B	100	99.065	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0020513	Ddx39b	100	98.832	ENSJJAG00000005660	-	100	98.832	Jaculus_jaculus
MGP_PahariEiJ_G0020513	Ddx39b	100	79.730	ENSLBEG00000017177	-	81	79.078	Labrus_bergylta
MGP_PahariEiJ_G0020513	Ddx39b	100	79.730	ENSLBEG00000012254	ddx39b	99	77.986	Labrus_bergylta
MGP_PahariEiJ_G0020513	Ddx39b	100	89.631	ENSLACG00000002110	DDX39B	100	89.631	Latimeria_chalumnae
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSLAFG00000014202	DDX39B	100	99.299	Loxodonta_africana
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSMFAG00000034233	DDX39B	100	99.533	Macaca_fascicularis
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSMMUG00000008839	DDX39B	100	99.533	Macaca_mulatta
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSMNEG00000041059	DDX39B	100	99.533	Macaca_nemestrina
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSMLEG00000043791	DDX39B	100	99.533	Mandrillus_leucophaeus
MGP_PahariEiJ_G0020513	Ddx39b	100	94.595	ENSMZEG00005017654	ddx39b	99	90.553	Maylandia_zebra
MGP_PahariEiJ_G0020513	Ddx39b	100	99.324	ENSMAUG00000008059	Ddx39b	100	99.299	Mesocricetus_auratus
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSMICG00000017349	DDX39B	100	99.533	Microcebus_murinus
MGP_PahariEiJ_G0020513	Ddx39b	100	99.533	ENSMOCG00000011169	Ddx39b	100	99.533	Microtus_ochrogaster
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSMODG00000015791	DDX39B	88	99.202	Monodelphis_domestica
MGP_PahariEiJ_G0020513	Ddx39b	66	97.938	MGP_CAROLIEiJ_G0021519	-	97	98.883	Mus_caroli
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSMUSG00000019432	Ddx39b	100	100.000	Mus_musculus
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	MGP_SPRETEiJ_G0022424	Ddx39b	100	100.000	Mus_spretus
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSMPUG00000011407	DDX39B	100	99.299	Mustela_putorius_furo
MGP_PahariEiJ_G0020513	Ddx39b	76	100.000	ENSMLUG00000001681	DDX39B	100	100.000	Myotis_lucifugus
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSNGAG00000022948	Ddx39b	100	99.533	Nannospalax_galili
MGP_PahariEiJ_G0020513	Ddx39b	100	75.467	ENSNLEG00000006094	DDX39B	100	75.467	Nomascus_leucogenys
MGP_PahariEiJ_G0020513	Ddx39b	86	100.000	ENSMEUG00000008264	DDX39B	86	100.000	Notamacropus_eugenii
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSOPRG00000011923	DDX39B	100	99.299	Ochotona_princeps
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSODEG00000018083	DDX39B	100	99.065	Octodon_degus
MGP_PahariEiJ_G0020513	Ddx39b	100	93.919	ENSONIG00000004740	ddx39b	100	91.667	Oreochromis_niloticus
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSOANG00000008361	DDX39B	95	98.312	Ornithorhynchus_anatinus
MGP_PahariEiJ_G0020513	Ddx39b	100	95.711	ENSOCUG00000024126	DDX39B	100	95.711	Oryctolagus_cuniculus
MGP_PahariEiJ_G0020513	Ddx39b	87	96.899	ENSOGAG00000009067	-	100	98.457	Otolemur_garnettii
MGP_PahariEiJ_G0020513	Ddx39b	100	98.658	ENSOGAG00000028850	-	100	98.135	Otolemur_garnettii
MGP_PahariEiJ_G0020513	Ddx39b	100	99.324	ENSOARG00000008787	DDX39B	98	99.299	Ovis_aries
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSPPAG00000043072	DDX39B	100	99.533	Pan_paniscus
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSPPRG00000001913	DDX39B	100	99.299	Panthera_pardus
MGP_PahariEiJ_G0020513	Ddx39b	100	99.324	ENSPTIG00000017669	DDX39B	100	98.598	Panthera_tigris_altaica
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSPTRG00000032509	DDX39B	100	99.533	Pan_troglodytes
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSPANG00000018609	DDX39B	100	99.533	Papio_anubis
MGP_PahariEiJ_G0020513	Ddx39b	100	94.595	ENSPKIG00000011324	ddx39b	100	91.304	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0020513	Ddx39b	100	99.766	ENSPEMG00000016905	Ddx39b	100	99.766	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSPCIG00000017572	DDX39B	100	99.533	Phascolarctos_cinereus
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSPPYG00000016433	DDX39B	100	99.533	Pongo_abelii
MGP_PahariEiJ_G0020513	Ddx39b	66	99.648	ENSPCAG00000003484	DDX39B	100	99.648	Procavia_capensis
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSPCOG00000018656	DDX39B	100	99.533	Propithecus_coquereli
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSPVAG00000004653	DDX39B	100	99.533	Pteropus_vampyrus
MGP_PahariEiJ_G0020513	Ddx39b	99	82.670	ENSPNYG00000010382	ddx39b	98	82.670	Pundamilia_nyererei
MGP_PahariEiJ_G0020513	Ddx39b	100	95.270	ENSPNAG00000026926	ddx39b	100	92.202	Pygocentrus_nattereri
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSRNOG00000000841	Ddx39b	100	100.000	Rattus_norvegicus
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSRBIG00000031309	DDX39B	100	89.252	Rhinopithecus_bieti
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSRROG00000039517	DDX39B	100	99.533	Rhinopithecus_roxellana
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSSBOG00000035513	-	100	89.252	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSSHAG00000003209	DDX39B	100	99.533	Sarcophilus_harrisii
MGP_PahariEiJ_G0020513	Ddx39b	100	94.595	ENSSFOG00015016107	ddx39b	100	91.533	Scleropages_formosus
MGP_PahariEiJ_G0020513	Ddx39b	100	96.622	ENSSDUG00000011557	ddx39b	100	93.287	Seriola_dumerili
MGP_PahariEiJ_G0020513	Ddx39b	100	95.946	ENSSLDG00000015763	ddx39b	100	93.056	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSSARG00000005245	DDX39B	100	87.701	Sorex_araneus
MGP_PahariEiJ_G0020513	Ddx39b	100	99.324	ENSSPUG00000012805	DDX39B	100	97.664	Sphenodon_punctatus
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSSSCG00000001400	DDX39B	100	100.000	Sus_scrofa
MGP_PahariEiJ_G0020513	Ddx39b	100	76.402	ENSTBEG00000003721	DDX39B	100	76.402	Tupaia_belangeri
MGP_PahariEiJ_G0020513	Ddx39b	100	90.993	ENSTTRG00000014074	DDX39B	100	90.993	Tursiops_truncatus
MGP_PahariEiJ_G0020513	Ddx39b	100	86.512	ENSUAMG00000027335	DDX39B	100	86.512	Ursus_americanus
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSUMAG00000015124	DDX39B	100	90.421	Ursus_maritimus
MGP_PahariEiJ_G0020513	Ddx39b	61	98.230	ENSVPAG00000009167	-	74	98.230	Vicugna_pacos
MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	ENSVVUG00000019518	DDX39B	99	99.299	Vulpes_vulpes
MGP_PahariEiJ_G0020513	Ddx39b	100	83.953	ENSXETG00000002498	ddx39b	99	83.953	Xenopus_tropicalis