EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0020768 (Gene tree)
Gene ID: 110335670
Gene Symbol: Safb2
Alias: -
Full Name: scaffold attachment factor B2
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Minus strand
Length: 24000 bases
Position: chr18:23670202-23694201
Accession: 110335670
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0044849	RRM_1	PF00076.22	6.2e-13	1	1
MGP_PahariEiJ_P0044849	SAP	PF02037.27	4.1e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0044849	-	3273	XM_021217964	MGP_PahariEiJ_P0044849	986 (aa)	XP_021073623	UPI000A3102A0
MGP_PahariEiJ_T0044848	-	423	-	MGP_PahariEiJ_P0044848	65 (aa)	-	-
MGP_PahariEiJ_T0044858	-	1962	-	-	- (aa)	-	-
MGP_PahariEiJ_T0044859	-	569	-	-	- (aa)	-	-
MGP_PahariEiJ_T0044856	-	685	-	-	- (aa)	-	-
MGP_PahariEiJ_T0044857	-	1714	-	MGP_PahariEiJ_P0044857	179 (aa)	-	-
MGP_PahariEiJ_T0044847	-	3043	-	MGP_PahariEiJ_P0044847	189 (aa)	-	-
MGP_PahariEiJ_T0044855	-	635	-	-	- (aa)	-	-
MGP_PahariEiJ_T0044852	-	1421	-	MGP_PahariEiJ_P0044852	382 (aa)	-	-
MGP_PahariEiJ_T0044853	-	863	-	MGP_PahariEiJ_P0044853	249 (aa)	-	-
MGP_PahariEiJ_T0044850	-	2527	-	MGP_PahariEiJ_P0044850	179 (aa)	-	-
MGP_PahariEiJ_T0044851	-	563	-	-	- (aa)	-	-
MGP_PahariEiJ_T0044863	-	439	-	-	- (aa)	-	-
MGP_PahariEiJ_T0044862	-	841	-	-	- (aa)	-	-
MGP_PahariEiJ_T0044861	-	969	-	-	- (aa)	-	-
MGP_PahariEiJ_T0044860	-	1090	-	MGP_PahariEiJ_P0044860	214 (aa)	-	-
MGP_PahariEiJ_T0044854	-	886	-	MGP_PahariEiJ_P0044854	295 (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0020768's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0020768's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PahariEiJ_G0020768	Safb2	89	50.625	MGP_PahariEiJ_G0020769	Safb	100	60.978

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0020768	Safb2	100	68.700	ENSG00000130254	SAFB2	100	69.000	Homo_sapiens
MGP_PahariEiJ_G0020768	Safb2	100	67.035	ENSAMEG00000012146	SAFB2	100	68.241	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0020768	Safb2	100	69.400	ENSANAG00000031936	SAFB2	100	69.600	Aotus_nancymaae
MGP_PahariEiJ_G0020768	Safb2	100	66.968	ENSBTAG00000001790	SAFB2	100	67.068	Bos_taurus
MGP_PahariEiJ_G0020768	Safb2	99	62.295	ENSCJAG00000017205	-	98	59.174	Callithrix_jacchus
MGP_PahariEiJ_G0020768	Safb2	100	68.232	ENSCAFG00000018814	SAFB2	99	69.828	Canis_familiaris
MGP_PahariEiJ_G0020768	Safb2	100	68.232	ENSCAFG00020018939	SAFB2	99	69.828	Canis_lupus_dingo
MGP_PahariEiJ_G0020768	Safb2	100	66.466	ENSCHIG00000024547	SAFB2	100	66.566	Capra_hircus
MGP_PahariEiJ_G0020768	Safb2	92	54.194	ENSCAPG00000011771	SAFB2	100	56.840	Cavia_aperea
MGP_PahariEiJ_G0020768	Safb2	99	66.901	ENSCPOG00000011394	SAFB2	100	67.260	Cavia_porcellus
MGP_PahariEiJ_G0020768	Safb2	100	69.138	ENSCCAG00000017348	SAFB2	100	69.339	Cebus_capucinus
MGP_PahariEiJ_G0020768	Safb2	100	68.068	ENSCATG00000039497	SAFB2	100	68.368	Cercocebus_atys
MGP_PahariEiJ_G0020768	Safb2	100	68.800	ENSCSAG00000009959	SAFB2	100	69.100	Chlorocebus_sabaeus
MGP_PahariEiJ_G0020768	Safb2	76	61.487	ENSCHOG00000010684	SAFB2	99	61.355	Choloepus_hoffmanni
MGP_PahariEiJ_G0020768	Safb2	100	64.700	ENSCANG00000024675	SAFB2	100	65.603	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0020768	Safb2	100	84.514	ENSCGRG00001015833	Safb2	100	84.514	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0020768	Safb2	100	84.514	ENSCGRG00000011131	Safb2	100	84.514	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0020768	Safb2	99	59.783	ENSDNOG00000045791	-	99	59.627	Dasypus_novemcinctus
MGP_PahariEiJ_G0020768	Safb2	95	63.975	ENSDORG00000016199	Safb2	100	64.182	Dipodomys_ordii
MGP_PahariEiJ_G0020768	Safb2	98	58.989	ENSETEG00000016756	-	50	78.924	Echinops_telfairi
MGP_PahariEiJ_G0020768	Safb2	90	66.779	ENSEASG00005022952	SAFB2	91	66.554	Equus_asinus_asinus
MGP_PahariEiJ_G0020768	Safb2	98	67.897	ENSECAG00000018978	SAFB2	100	67.545	Equus_caballus
MGP_PahariEiJ_G0020768	Safb2	100	67.300	ENSFCAG00000011834	SAFB2	99	69.394	Felis_catus
MGP_PahariEiJ_G0020768	Safb2	93	66.272	ENSFDAG00000020009	SAFB2	100	66.063	Fukomys_damarensis
MGP_PahariEiJ_G0020768	Safb2	99	67.374	ENSGGOG00000015093	SAFB2	99	66.800	Gorilla_gorilla
MGP_PahariEiJ_G0020768	Safb2	100	71.215	ENSHGLG00000017442	SAFB2	100	71.215	Heterocephalus_glaber_female
MGP_PahariEiJ_G0020768	Safb2	99	65.755	ENSLAFG00000003836	SAFB2	99	64.944	Loxodonta_africana
MGP_PahariEiJ_G0020768	Safb2	100	68.800	ENSMFAG00000039706	SAFB2	100	69.100	Macaca_fascicularis
MGP_PahariEiJ_G0020768	Safb2	100	68.900	ENSMMUG00000017968	SAFB2	100	69.200	Macaca_mulatta
MGP_PahariEiJ_G0020768	Safb2	100	63.410	ENSMNEG00000032042	SAFB2	100	64.442	Macaca_nemestrina
MGP_PahariEiJ_G0020768	Safb2	100	68.800	ENSMLEG00000034562	SAFB2	100	69.100	Mandrillus_leucophaeus
MGP_PahariEiJ_G0020768	Safb2	100	82.123	ENSMAUG00000011573	Safb2	94	84.480	Mesocricetus_auratus
MGP_PahariEiJ_G0020768	Safb2	99	68.948	ENSMICG00000008711	SAFB2	99	68.737	Microcebus_murinus
MGP_PahariEiJ_G0020768	Safb2	100	81.947	ENSMOCG00000006827	Safb2	100	81.846	Microtus_ochrogaster
MGP_PahariEiJ_G0020768	Safb2	98	59.432	ENSMODG00000001178	SAFB2	99	59.159	Monodelphis_domestica
MGP_PahariEiJ_G0020768	Safb2	100	96.270	MGP_CAROLIEiJ_G0021779	Safb2	100	96.270	Mus_caroli
MGP_PahariEiJ_G0020768	Safb2	100	96.569	ENSMUSG00000042625	Safb2	100	96.569	Mus_musculus
MGP_PahariEiJ_G0020768	Safb2	100	95.794	MGP_SPRETEiJ_G0022690	Safb2	100	95.794	Mus_spretus
MGP_PahariEiJ_G0020768	Safb2	99	69.869	ENSMPUG00000006106	SAFB2	92	70.071	Mustela_putorius_furo
MGP_PahariEiJ_G0020768	Safb2	99	66.333	ENSMLUG00000001050	SAFB2	99	65.030	Myotis_lucifugus
MGP_PahariEiJ_G0020768	Safb2	100	68.200	ENSNLEG00000013514	SAFB2	100	68.500	Nomascus_leucogenys
MGP_PahariEiJ_G0020768	Safb2	94	55.675	ENSMEUG00000002456	SAFB2	100	55.782	Notamacropus_eugenii
MGP_PahariEiJ_G0020768	Safb2	99	61.264	ENSOPRG00000011523	-	99	61.300	Ochotona_princeps
MGP_PahariEiJ_G0020768	Safb2	100	66.501	ENSODEG00000014751	SAFB2	100	66.832	Octodon_degus
MGP_PahariEiJ_G0020768	Safb2	56	47.581	ENSOCUG00000001592	-	98	62.025	Oryctolagus_cuniculus
MGP_PahariEiJ_G0020768	Safb2	100	67.764	ENSOGAG00000006855	SAFB2	100	67.864	Otolemur_garnettii
MGP_PahariEiJ_G0020768	Safb2	99	57.923	ENSOARG00000007982	SAFB2	100	55.357	Ovis_aries
MGP_PahariEiJ_G0020768	Safb2	100	68.800	ENSPPAG00000043392	SAFB2	100	69.100	Pan_paniscus
MGP_PahariEiJ_G0020768	Safb2	100	67.300	ENSPPRG00000011310	SAFB2	99	69.394	Panthera_pardus
MGP_PahariEiJ_G0020768	Safb2	80	64.489	ENSPTIG00000015120	SAFB2	90	66.667	Panthera_tigris_altaica
MGP_PahariEiJ_G0020768	Safb2	100	62.963	ENSPTRG00000010334	SAFB2	100	64.200	Pan_troglodytes
MGP_PahariEiJ_G0020768	Safb2	100	68.700	ENSPANG00000007004	SAFB2	100	69.000	Papio_anubis
MGP_PahariEiJ_G0020768	Safb2	100	81.627	ENSPEMG00000016015	Safb2	100	81.827	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0020768	Safb2	61	66.118	ENSPCIG00000009518	-	99	70.166	Phascolarctos_cinereus
MGP_PahariEiJ_G0020768	Safb2	100	69.000	ENSPPYG00000009427	SAFB2	100	69.200	Pongo_abelii
MGP_PahariEiJ_G0020768	Safb2	100	64.048	ENSPCAG00000006352	SAFB2	99	64.653	Procavia_capensis
MGP_PahariEiJ_G0020768	Safb2	99	67.882	ENSPCOG00000023260	SAFB2	99	67.984	Propithecus_coquereli
MGP_PahariEiJ_G0020768	Safb2	99	61.202	ENSPVAG00000004902	-	74	82.609	Pteropus_vampyrus
MGP_PahariEiJ_G0020768	Safb2	93	82.036	ENSRNOG00000049511	AABR07066522.1	100	82.464	Rattus_norvegicus
MGP_PahariEiJ_G0020768	Safb2	99	62.295	ENSRBIG00000033446	SAFB2	100	77.138	Rhinopithecus_bieti
MGP_PahariEiJ_G0020768	Safb2	100	68.900	ENSRROG00000006606	SAFB2	100	69.200	Rhinopithecus_roxellana
MGP_PahariEiJ_G0020768	Safb2	100	68.500	ENSSBOG00000032315	SAFB2	100	69.231	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0020768	Safb2	97	59.669	ENSSHAG00000012703	SAFB2	99	59.050	Sarcophilus_harrisii
MGP_PahariEiJ_G0020768	Safb2	81	59.900	ENSSARG00000000649	SAFB2	100	59.683	Sorex_araneus
MGP_PahariEiJ_G0020768	Safb2	100	68.432	ENSSSCG00000013523	SAFB2	100	69.031	Sus_scrofa
MGP_PahariEiJ_G0020768	Safb2	78	59.474	ENSTBEG00000012709	SAFB2	85	59.474	Tupaia_belangeri
MGP_PahariEiJ_G0020768	Safb2	94	63.812	ENSTTRG00000013585	SAFB2	93	63.812	Tursiops_truncatus
MGP_PahariEiJ_G0020768	Safb2	99	70.144	ENSUAMG00000024695	SAFB2	98	70.213	Ursus_americanus
MGP_PahariEiJ_G0020768	Safb2	85	65.815	ENSUMAG00000009585	SAFB2	88	67.572	Ursus_maritimus
MGP_PahariEiJ_G0020768	Safb2	75	77.083	ENSVPAG00000012041	SAFB2	89	77.083	Vicugna_pacos
MGP_PahariEiJ_G0020768	Safb2	100	68.432	ENSVVUG00000013695	SAFB2	94	76.923	Vulpes_vulpes