EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0020769 (Gene tree)
Gene ID: 110335594
Gene Symbol: Safb
Alias: 3110021E02Rik|5330423C17Rik|SAFB1
Full Name: scaffold attachment factor B
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Plus strand
Length: 21494 bases
Position: chr18:23694426-23715919
Accession: 110335594
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0044866	RRM_5	PF13893.6	5.8e-06	1	1
MGP_PahariEiJ_P0044865	RRM_5	PF13893.6	5.8e-06	1	1
MGP_PahariEiJ_P0044866	RRM_1	PF00076.22	2.7e-12	1	1
MGP_PahariEiJ_P0044865	RRM_1	PF00076.22	2.7e-12	1	1
MGP_PahariEiJ_P0044867	SAP	PF02037.27	6.2e-11	1	1
MGP_PahariEiJ_P0044866	SAP	PF02037.27	1.6e-10	1	1
MGP_PahariEiJ_P0044865	SAP	PF02037.27	1.6e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0044870	-	714	-	-	- (aa)	-	-
MGP_PahariEiJ_T0044871	-	674	-	-	- (aa)	-	-
MGP_PahariEiJ_T0044872	-	409	-	-	- (aa)	-	-
MGP_PahariEiJ_T0044873	-	1051	-	-	- (aa)	-	-
MGP_PahariEiJ_T0044874	-	416	-	-	- (aa)	-	-
MGP_PahariEiJ_T0044867	-	645	-	MGP_PahariEiJ_P0044867	214 (aa)	-	-
MGP_PahariEiJ_T0044866	-	3110	XM_021217817	MGP_PahariEiJ_P0044866	938 (aa)	XP_021073476	UPI000A310AF8
MGP_PahariEiJ_T0044865	-	3133	XM_021217818	MGP_PahariEiJ_P0044865	940 (aa)	XP_021073477	UPI000A31361E
MGP_PahariEiJ_T0044864	-	1776	-	-	- (aa)	-	-
MGP_PahariEiJ_T0044869	-	1920	-	-	- (aa)	-	-
MGP_PahariEiJ_T0044868	-	774	-	MGP_PahariEiJ_P0044868	168 (aa)	-	-

Gene Model

Click here to download MGP_PahariEiJ_G0020769's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0020769's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_PahariEiJ_G0020769	Safb	100	60.978	MGP_PahariEiJ_G0020768	Safb2	89	50.625

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0020769	Safb	100	84.166	ENSG00000160633	SAFB	100	84.166	Homo_sapiens
MGP_PahariEiJ_G0020769	Safb	100	83.351	ENSAMEG00000012254	SAFB	98	82.916	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0020769	Safb	94	38.573	ENSACIG00000006247	safb	51	53.782	Amphilophus_citrinellus
MGP_PahariEiJ_G0020769	Safb	93	42.358	ENSAOCG00000006308	safb	66	40.510	Amphiprion_ocellaris
MGP_PahariEiJ_G0020769	Safb	90	58.333	ENSAPLG00000006355	-	99	59.722	Anas_platyrhynchos
MGP_PahariEiJ_G0020769	Safb	94	61.392	ENSAPLG00000005780	-	100	60.606	Anas_platyrhynchos
MGP_PahariEiJ_G0020769	Safb	65	49.315	ENSACAG00000016893	-	74	48.983	Anolis_carolinensis
MGP_PahariEiJ_G0020769	Safb	100	83.741	ENSANAG00000028821	SAFB	100	83.741	Aotus_nancymaae
MGP_PahariEiJ_G0020769	Safb	63	59.664	ENSACLG00000001926	safb	51	58.537	Astatotilapia_calliptera
MGP_PahariEiJ_G0020769	Safb	100	80.128	ENSBTAG00000007875	SAFB	100	80.128	Bos_taurus
MGP_PahariEiJ_G0020769	Safb	86	81.421	ENSBTAG00000051794	-	91	81.421	Bos_taurus
MGP_PahariEiJ_G0020769	Safb	95	85.222	ENSCJAG00000017081	SAFB	100	89.405	Callithrix_jacchus
MGP_PahariEiJ_G0020769	Safb	100	84.665	ENSCAFG00000018803	SAFB	87	84.665	Canis_familiaris
MGP_PahariEiJ_G0020769	Safb	100	84.665	ENSCAFG00020018943	SAFB	100	84.665	Canis_lupus_dingo
MGP_PahariEiJ_G0020769	Safb	100	79.702	ENSCHIG00000007262	SAFB	98	82.547	Capra_hircus
MGP_PahariEiJ_G0020769	Safb	57	75.564	ENSTSYG00000001851	-	53	86.296	Carlito_syrichta
MGP_PahariEiJ_G0020769	Safb	100	85.095	ENSCPOG00000026322	SAFB	100	85.095	Cavia_porcellus
MGP_PahariEiJ_G0020769	Safb	100	84.076	ENSCCAG00000020193	SAFB	100	83.333	Cebus_capucinus
MGP_PahariEiJ_G0020769	Safb	100	84.060	ENSCATG00000029994	SAFB	100	84.060	Cercocebus_atys
MGP_PahariEiJ_G0020769	Safb	100	84.378	ENSCLAG00000007734	SAFB	100	85.866	Chinchilla_lanigera
MGP_PahariEiJ_G0020769	Safb	100	83.953	ENSCSAG00000009949	SAFB	100	83.953	Chlorocebus_sabaeus
MGP_PahariEiJ_G0020769	Safb	87	95.238	ENSCHOG00000003208	SAFB	93	95.238	Choloepus_hoffmanni
MGP_PahariEiJ_G0020769	Safb	91	57.159	ENSCPBG00000010936	-	63	53.767	Chrysemys_picta_bellii
MGP_PahariEiJ_G0020769	Safb	92	60.412	ENSCPBG00000010928	-	99	60.069	Chrysemys_picta_bellii
MGP_PahariEiJ_G0020769	Safb	96	93.035	ENSCANG00000004774	-	99	93.035	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0020769	Safb	100	78.914	ENSCANG00000019754	-	100	78.914	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0020769	Safb	100	95.532	ENSCGRG00001002254	Safb	100	95.638	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0020769	Safb	92	91.348	ENSCGRG00000011529	Safb	97	91.461	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0020769	Safb	75	46.181	ENSCSEG00000019870	safb	53	53.629	Cynoglossus_semilaevis
MGP_PahariEiJ_G0020769	Safb	89	42.691	ENSDARG00000020467	safb	62	61.290	Danio_rerio
MGP_PahariEiJ_G0020769	Safb	100	82.059	ENSDNOG00000015746	SAFB	95	80.118	Dasypus_novemcinctus
MGP_PahariEiJ_G0020769	Safb	100	79.979	ENSDORG00000016200	Safb	100	79.495	Dipodomys_ordii
MGP_PahariEiJ_G0020769	Safb	74	85.507	ENSETEG00000018679	SAFB	85	85.507	Echinops_telfairi
MGP_PahariEiJ_G0020769	Safb	100	82.135	ENSEASG00005023019	SAFB	100	81.184	Equus_asinus_asinus
MGP_PahariEiJ_G0020769	Safb	100	83.830	ENSECAG00000018659	SAFB	89	83.617	Equus_caballus
MGP_PahariEiJ_G0020769	Safb	96	42.312	ENSELUG00000022327	safb	56	58.065	Esox_lucius
MGP_PahariEiJ_G0020769	Safb	100	84.574	ENSFCAG00000011835	SAFB	100	84.574	Felis_catus
MGP_PahariEiJ_G0020769	Safb	91	54.746	ENSFALG00000013881	-	63	53.688	Ficedula_albicollis
MGP_PahariEiJ_G0020769	Safb	100	61.635	ENSFALG00000013882	-	89	61.946	Ficedula_albicollis
MGP_PahariEiJ_G0020769	Safb	95	87.192	ENSFDAG00000020306	SAFB	99	82.567	Fukomys_damarensis
MGP_PahariEiJ_G0020769	Safb	100	57.417	ENSGALG00000001948	-	97	59.232	Gallus_gallus
MGP_PahariEiJ_G0020769	Safb	100	61.910	ENSGALG00000013365	-	97	62.013	Gallus_gallus
MGP_PahariEiJ_G0020769	Safb	96	59.263	ENSGAGG00000008424	-	66	56.025	Gopherus_agassizii
MGP_PahariEiJ_G0020769	Safb	67	59.498	ENSGAGG00000017702	-	94	59.027	Gopherus_agassizii
MGP_PahariEiJ_G0020769	Safb	100	83.953	ENSGGOG00000015109	SAFB	100	83.953	Gorilla_gorilla
MGP_PahariEiJ_G0020769	Safb	71	50.833	ENSHBUG00000009218	safb	52	50.833	Haplochromis_burtoni
MGP_PahariEiJ_G0020769	Safb	100	86.887	ENSHGLG00000015883	SAFB	100	86.887	Heterocephalus_glaber_female
MGP_PahariEiJ_G0020769	Safb	95	40.909	ENSIPUG00000024869	safb2	62	44.754	Ictalurus_punctatus
MGP_PahariEiJ_G0020769	Safb	93	86.971	ENSSTOG00000002783	SAFB	100	86.971	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0020769	Safb	100	87.540	ENSJJAG00000009021	Safb	98	88.299	Jaculus_jaculus
MGP_PahariEiJ_G0020769	Safb	73	54.430	ENSLACG00000018090	SAFB	65	47.881	Latimeria_chalumnae
MGP_PahariEiJ_G0020769	Safb	97	45.226	ENSLOCG00000003613	safb	73	44.292	Lepisosteus_oculatus
MGP_PahariEiJ_G0020769	Safb	99	81.557	ENSLAFG00000003840	SAFB	100	79.638	Loxodonta_africana
MGP_PahariEiJ_G0020769	Safb	100	83.970	ENSMFAG00000003885	SAFB	100	83.227	Macaca_fascicularis
MGP_PahariEiJ_G0020769	Safb	100	84.060	ENSMMUG00000017970	SAFB	100	84.060	Macaca_mulatta
MGP_PahariEiJ_G0020769	Safb	100	80.573	ENSMNEG00000035637	SAFB	100	80.021	Macaca_nemestrina
MGP_PahariEiJ_G0020769	Safb	95	84.729	ENSMLEG00000038637	SAFB	100	77.487	Mandrillus_leucophaeus
MGP_PahariEiJ_G0020769	Safb	89	41.458	ENSMZEG00005009120	safb	51	58.537	Maylandia_zebra
MGP_PahariEiJ_G0020769	Safb	88	59.259	ENSMGAG00000001051	-	97	57.437	Meleagris_gallopavo
MGP_PahariEiJ_G0020769	Safb	97	59.609	ENSMGAG00000001101	-	100	59.392	Meleagris_gallopavo
MGP_PahariEiJ_G0020769	Safb	52	96.708	ENSMAUG00000005013	Safb	100	96.708	Mesocricetus_auratus
MGP_PahariEiJ_G0020769	Safb	100	80.786	ENSMICG00000008739	-	100	79.299	Microcebus_murinus
MGP_PahariEiJ_G0020769	Safb	92	77.157	ENSMICG00000046795	-	98	87.234	Microcebus_murinus
MGP_PahariEiJ_G0020769	Safb	100	94.368	ENSMOCG00000014040	Safb	100	94.368	Microtus_ochrogaster
MGP_PahariEiJ_G0020769	Safb	55	53.333	ENSMMOG00000020366	-	62	53.333	Mola_mola
MGP_PahariEiJ_G0020769	Safb	100	68.465	ENSMODG00000001236	SAFB	98	69.468	Monodelphis_domestica
MGP_PahariEiJ_G0020769	Safb	100	99.255	MGP_CAROLIEiJ_G0021780	Safb	100	99.255	Mus_caroli
MGP_PahariEiJ_G0020769	Safb	100	98.617	ENSMUSG00000071054	Safb	100	98.617	Mus_musculus
MGP_PahariEiJ_G0020769	Safb	100	84.378	ENSMPUG00000006123	SAFB	94	84.378	Mustela_putorius_furo
MGP_PahariEiJ_G0020769	Safb	100	83.422	ENSMLUG00000001081	SAFB	100	83.422	Myotis_lucifugus
MGP_PahariEiJ_G0020769	Safb	100	87.792	ENSNGAG00000019882	Safb	100	87.792	Nannospalax_galili
MGP_PahariEiJ_G0020769	Safb	95	85.714	ENSNLEG00000013551	SAFB	100	83.278	Nomascus_leucogenys
MGP_PahariEiJ_G0020769	Safb	89	77.964	ENSOPRG00000011561	-	100	78.683	Ochotona_princeps
MGP_PahariEiJ_G0020769	Safb	100	86.610	ENSODEG00000014838	SAFB	100	86.610	Octodon_degus
MGP_PahariEiJ_G0020769	Safb	91	75.410	ENSOCUG00000014628	SAFB	63	75.830	Oryctolagus_cuniculus
MGP_PahariEiJ_G0020769	Safb	77	48.362	ENSORLG00020000404	safb	50	54.393	Oryzias_latipes_hni
MGP_PahariEiJ_G0020769	Safb	100	79.175	ENSOGAG00000027769	SAFB	100	78.118	Otolemur_garnettii
MGP_PahariEiJ_G0020769	Safb	79	73.035	ENSOARG00000007856	-	100	72.764	Ovis_aries
MGP_PahariEiJ_G0020769	Safb	95	83.744	ENSOARG00000007662	-	100	74.920	Ovis_aries
MGP_PahariEiJ_G0020769	Safb	100	83.970	ENSPPAG00000035129	SAFB	100	83.227	Pan_paniscus
MGP_PahariEiJ_G0020769	Safb	100	84.574	ENSPPRG00000017197	SAFB	100	84.574	Panthera_pardus
MGP_PahariEiJ_G0020769	Safb	100	83.970	ENSPTRG00000010335	SAFB	100	83.227	Pan_troglodytes
MGP_PahariEiJ_G0020769	Safb	100	83.864	ENSPANG00000007770	SAFB	100	83.121	Papio_anubis
MGP_PahariEiJ_G0020769	Safb	99	58.273	ENSPSIG00000009367	-	63	55.502	Pelodiscus_sinensis
MGP_PahariEiJ_G0020769	Safb	100	58.376	ENSPSIG00000011679	-	100	58.462	Pelodiscus_sinensis
MGP_PahariEiJ_G0020769	Safb	100	95.426	ENSPEMG00000020428	Safb	100	95.532	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0020769	Safb	57	78.229	ENSPCIG00000009504	-	100	78.782	Phascolarctos_cinereus
MGP_PahariEiJ_G0020769	Safb	100	84.345	ENSPPYG00000009428	SAFB	100	84.345	Pongo_abelii
MGP_PahariEiJ_G0020769	Safb	95	86.207	ENSPCAG00000006475	SAFB	100	77.423	Procavia_capensis
MGP_PahariEiJ_G0020769	Safb	100	76.825	ENSPCOG00000014090	SAFB	100	76.119	Propithecus_coquereli
MGP_PahariEiJ_G0020769	Safb	100	76.915	ENSPVAG00000004913	SAFB	100	76.489	Pteropus_vampyrus
MGP_PahariEiJ_G0020769	Safb	100	97.021	ENSRNOG00000050543	Safb	100	97.021	Rattus_norvegicus
MGP_PahariEiJ_G0020769	Safb	95	85.222	ENSRBIG00000042509	SAFB	88	89.247	Rhinopithecus_bieti
MGP_PahariEiJ_G0020769	Safb	100	83.970	ENSRROG00000029278	SAFB	100	83.227	Rhinopithecus_roxellana
MGP_PahariEiJ_G0020769	Safb	100	84.166	ENSSBOG00000026291	SAFB	100	84.166	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0020769	Safb	94	40.669	ENSSMAG00000009316	safb	63	42.381	Scophthalmus_maximus
MGP_PahariEiJ_G0020769	Safb	93	78.132	ENSSARG00000010475	SAFB	100	77.449	Sorex_araneus
MGP_PahariEiJ_G0020769	Safb	60	50.000	ENSSPUG00000009747	-	99	52.479	Sphenodon_punctatus
MGP_PahariEiJ_G0020769	Safb	54	48.794	ENSSPUG00000009820	-	63	50.000	Sphenodon_punctatus
MGP_PahariEiJ_G0020769	Safb	100	83.263	ENSSSCG00000013522	SAFB	99	82.896	Sus_scrofa
MGP_PahariEiJ_G0020769	Safb	96	60.851	ENSTGUG00000000502	-	97	61.055	Taeniopygia_guttata
MGP_PahariEiJ_G0020769	Safb	95	70.936	ENSTBEG00000013124	-	74	85.606	Tupaia_belangeri
MGP_PahariEiJ_G0020769	Safb	92	93.651	ENSTTRG00000013588	SAFB	92	93.651	Tursiops_truncatus
MGP_PahariEiJ_G0020769	Safb	78	83.560	ENSUAMG00000024543	SAFB	99	83.673	Ursus_americanus
MGP_PahariEiJ_G0020769	Safb	96	85.366	ENSUMAG00000009734	SAFB	88	91.489	Ursus_maritimus
MGP_PahariEiJ_G0020769	Safb	71	92.188	ENSVPAG00000012043	SAFB	78	92.188	Vicugna_pacos
MGP_PahariEiJ_G0020769	Safb	100	84.485	ENSVVUG00000013720	SAFB	87	84.485	Vulpes_vulpes
MGP_PahariEiJ_G0020769	Safb	93	42.714	ENSXETG00000008755	safb	64	70.455	Xenopus_tropicalis