EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_PahariEiJ_G0020924 (Gene tree)
Gene ID: 110335626
Gene Symbol: Srbd1
Alias: D530025C17Rik
Full Name: S1 RNA binding domain 1
Gene Type: protein_coding
Species: Mus_pahari
Status: putative
Strand: Minus strand
Length: 166905 bases
Position: chr18:51669390-51836294
Accession: 110335626
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_PahariEiJ_P0045288	S1	PF00575.23	9.8e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_PahariEiJ_T0045288	-	3503	XM_021217891	MGP_PahariEiJ_P0045288	981 (aa)	XP_021073550	UPI000A311958

Gene Model

Click here to download MGP_PahariEiJ_G0020924's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_PahariEiJ_G0020924's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_PahariEiJ_G0020924	Srbd1	100	81.005	ENSG00000068784	SRBD1	100	81.005	Homo_sapiens
MGP_PahariEiJ_G0020924	Srbd1	85	56.706	ENSAPOG00000005103	si:ch211-117n7.8	84	56.941	Acanthochromis_polyacanthus
MGP_PahariEiJ_G0020924	Srbd1	100	81.187	ENSAMEG00000005993	SRBD1	100	81.187	Ailuropoda_melanoleuca
MGP_PahariEiJ_G0020924	Srbd1	91	53.965	ENSACIG00000009875	si:ch211-117n7.8	91	54.015	Amphilophus_citrinellus
MGP_PahariEiJ_G0020924	Srbd1	84	57.075	ENSAOCG00000024718	si:ch211-117n7.8	84	57.075	Amphiprion_ocellaris
MGP_PahariEiJ_G0020924	Srbd1	84	57.194	ENSAPEG00000002645	si:ch211-117n7.8	87	57.194	Amphiprion_percula
MGP_PahariEiJ_G0020924	Srbd1	85	56.757	ENSATEG00000010844	si:ch211-117n7.8	85	56.757	Anabas_testudineus
MGP_PahariEiJ_G0020924	Srbd1	85	76.303	ENSAPLG00000006313	SRBD1	100	68.569	Anas_platyrhynchos
MGP_PahariEiJ_G0020924	Srbd1	100	81.106	ENSANAG00000025573	SRBD1	100	81.106	Aotus_nancymaae
MGP_PahariEiJ_G0020924	Srbd1	96	52.033	ENSACLG00000024219	si:ch211-117n7.8	92	52.033	Astatotilapia_calliptera
MGP_PahariEiJ_G0020924	Srbd1	86	59.812	ENSAMXG00000004294	SRBD1	85	59.835	Astyanax_mexicanus
MGP_PahariEiJ_G0020924	Srbd1	100	79.116	ENSBTAG00000007508	SRBD1	97	79.719	Bos_taurus
MGP_PahariEiJ_G0020924	Srbd1	100	80.302	ENSCJAG00000000727	SRBD1	100	80.302	Callithrix_jacchus
MGP_PahariEiJ_G0020924	Srbd1	100	81.545	ENSCAFG00000002554	SRBD1	100	81.545	Canis_familiaris
MGP_PahariEiJ_G0020924	Srbd1	100	78.614	ENSCAFG00020026284	SRBD1	99	85.246	Canis_lupus_dingo
MGP_PahariEiJ_G0020924	Srbd1	100	79.116	ENSCHIG00000016535	SRBD1	98	79.719	Capra_hircus
MGP_PahariEiJ_G0020924	Srbd1	100	81.563	ENSTSYG00000012797	SRBD1	100	81.563	Carlito_syrichta
MGP_PahariEiJ_G0020924	Srbd1	100	81.809	ENSCPOG00000004773	SRBD1	100	81.809	Cavia_porcellus
MGP_PahariEiJ_G0020924	Srbd1	100	81.508	ENSCCAG00000025589	SRBD1	100	81.508	Cebus_capucinus
MGP_PahariEiJ_G0020924	Srbd1	100	81.608	ENSCATG00000039530	SRBD1	100	81.608	Cercocebus_atys
MGP_PahariEiJ_G0020924	Srbd1	100	82.472	ENSCLAG00000008623	SRBD1	100	82.472	Chinchilla_lanigera
MGP_PahariEiJ_G0020924	Srbd1	100	81.608	ENSCSAG00000013350	SRBD1	100	81.608	Chlorocebus_sabaeus
MGP_PahariEiJ_G0020924	Srbd1	87	92.157	ENSCHOG00000003805	SRBD1	87	92.157	Choloepus_hoffmanni
MGP_PahariEiJ_G0020924	Srbd1	96	70.917	ENSCPBG00000005677	SRBD1	100	70.170	Chrysemys_picta_bellii
MGP_PahariEiJ_G0020924	Srbd1	79	43.853	ENSCING00000005950	-	99	43.853	Ciona_intestinalis
MGP_PahariEiJ_G0020924	Srbd1	80	44.076	ENSCSAVG00000000861	-	99	44.076	Ciona_savignyi
MGP_PahariEiJ_G0020924	Srbd1	99	81.168	ENSCANG00000016307	SRBD1	99	81.168	Colobus_angolensis_palliatus
MGP_PahariEiJ_G0020924	Srbd1	100	87.691	ENSCGRG00001000513	Srbd1	100	87.691	Cricetulus_griseus_chok1gshd
MGP_PahariEiJ_G0020924	Srbd1	100	87.691	ENSCGRG00000002283	Srbd1	100	87.691	Cricetulus_griseus_crigri
MGP_PahariEiJ_G0020924	Srbd1	85	55.830	ENSCSEG00000000856	si:ch211-117n7.8	85	55.948	Cynoglossus_semilaevis
MGP_PahariEiJ_G0020924	Srbd1	85	57.160	ENSCVAG00000020212	si:ch211-117n7.8	95	55.617	Cyprinodon_variegatus
MGP_PahariEiJ_G0020924	Srbd1	100	80.781	ENSDNOG00000018686	SRBD1	100	80.781	Dasypus_novemcinctus
MGP_PahariEiJ_G0020924	Srbd1	100	80.691	ENSDORG00000010468	Srbd1	100	80.691	Dipodomys_ordii
MGP_PahariEiJ_G0020924	Srbd1	79	37.218	FBgn0051156	CG31156	79	37.469	Drosophila_melanogaster
MGP_PahariEiJ_G0020924	Srbd1	89	78.843	ENSETEG00000000739	SRBD1	92	79.566	Echinops_telfairi
MGP_PahariEiJ_G0020924	Srbd1	73	48.356	ENSEBUG00000008902	si:ch211-117n7.8	96	48.356	Eptatretus_burgeri
MGP_PahariEiJ_G0020924	Srbd1	100	78.815	ENSEASG00005003132	SRBD1	97	85.350	Equus_asinus_asinus
MGP_PahariEiJ_G0020924	Srbd1	100	81.928	ENSECAG00000013865	SRBD1	98	81.928	Equus_caballus
MGP_PahariEiJ_G0020924	Srbd1	86	59.203	ENSELUG00000012592	si:ch211-117n7.8	82	59.203	Esox_lucius
MGP_PahariEiJ_G0020924	Srbd1	100	81.526	ENSFCAG00000005101	SRBD1	100	81.526	Felis_catus
MGP_PahariEiJ_G0020924	Srbd1	92	70.199	ENSFALG00000012966	SRBD1	100	66.667	Ficedula_albicollis
MGP_PahariEiJ_G0020924	Srbd1	98	82.292	ENSFDAG00000016670	SRBD1	99	82.292	Fukomys_damarensis
MGP_PahariEiJ_G0020924	Srbd1	84	57.414	ENSFHEG00000019480	si:ch211-117n7.8	82	57.414	Fundulus_heteroclitus
MGP_PahariEiJ_G0020924	Srbd1	50	54.023	ENSGMOG00000018010	-	100	54.023	Gadus_morhua
MGP_PahariEiJ_G0020924	Srbd1	87	73.938	ENSGALG00000009990	SRBD1	100	67.871	Gallus_gallus
MGP_PahariEiJ_G0020924	Srbd1	99	51.089	ENSGAFG00000019664	si:ch211-117n7.8	99	50.990	Gambusia_affinis
MGP_PahariEiJ_G0020924	Srbd1	62	59.360	ENSGACG00000010794	si:ch211-117n7.8	100	59.554	Gasterosteus_aculeatus
MGP_PahariEiJ_G0020924	Srbd1	84	78.528	ENSGAGG00000006166	SRBD1	99	78.528	Gopherus_agassizii
MGP_PahariEiJ_G0020924	Srbd1	97	82.213	ENSGGOG00000005910	SRBD1	99	82.213	Gorilla_gorilla
MGP_PahariEiJ_G0020924	Srbd1	91	47.875	ENSHBUG00000013207	si:ch211-117n7.8	99	45.417	Haplochromis_burtoni
MGP_PahariEiJ_G0020924	Srbd1	99	82.688	ENSHGLG00000018153	-	99	82.688	Heterocephalus_glaber_female
MGP_PahariEiJ_G0020924	Srbd1	99	82.485	ENSHGLG00100015183	-	99	82.485	Heterocephalus_glaber_male
MGP_PahariEiJ_G0020924	Srbd1	85	59.405	ENSIPUG00000009661	srbd1	96	53.340	Ictalurus_punctatus
MGP_PahariEiJ_G0020924	Srbd1	100	83.537	ENSSTOG00000005898	SRBD1	100	83.537	Ictidomys_tridecemlineatus
MGP_PahariEiJ_G0020924	Srbd1	100	78.803	ENSJJAG00000022244	Srbd1	100	78.803	Jaculus_jaculus
MGP_PahariEiJ_G0020924	Srbd1	85	56.706	ENSKMAG00000003473	si:ch211-117n7.8	84	56.706	Kryptolebias_marmoratus
MGP_PahariEiJ_G0020924	Srbd1	99	49.804	ENSLBEG00000027518	si:ch211-117n7.8	99	49.804	Labrus_bergylta
MGP_PahariEiJ_G0020924	Srbd1	85	69.076	ENSLACG00000009790	SRBD1	99	69.076	Latimeria_chalumnae
MGP_PahariEiJ_G0020924	Srbd1	96	57.796	ENSLOCG00000016360	si:ch211-117n7.8	99	56.543	Lepisosteus_oculatus
MGP_PahariEiJ_G0020924	Srbd1	100	81.608	ENSMFAG00000042026	SRBD1	100	81.608	Macaca_fascicularis
MGP_PahariEiJ_G0020924	Srbd1	100	81.508	ENSMMUG00000003490	SRBD1	100	81.508	Macaca_mulatta
MGP_PahariEiJ_G0020924	Srbd1	100	79.095	ENSMNEG00000034701	SRBD1	100	79.095	Macaca_nemestrina
MGP_PahariEiJ_G0020924	Srbd1	100	81.407	ENSMLEG00000000745	SRBD1	100	81.407	Mandrillus_leucophaeus
MGP_PahariEiJ_G0020924	Srbd1	99	50.545	ENSMAMG00000021921	si:ch211-117n7.8	99	50.545	Mastacembelus_armatus
MGP_PahariEiJ_G0020924	Srbd1	96	52.033	ENSMZEG00005027369	si:ch211-117n7.8	92	52.033	Maylandia_zebra
MGP_PahariEiJ_G0020924	Srbd1	80	73.241	ENSMGAG00000010273	SRBD1	99	73.241	Meleagris_gallopavo
MGP_PahariEiJ_G0020924	Srbd1	79	88.060	ENSMAUG00000013916	Srbd1	95	88.060	Mesocricetus_auratus
MGP_PahariEiJ_G0020924	Srbd1	100	81.307	ENSMICG00000007835	SRBD1	100	81.307	Microcebus_murinus
MGP_PahariEiJ_G0020924	Srbd1	100	87.386	ENSMOCG00000018716	Srbd1	100	87.386	Microtus_ochrogaster
MGP_PahariEiJ_G0020924	Srbd1	97	51.184	ENSMMOG00000007507	si:ch211-117n7.8	99	51.184	Mola_mola
MGP_PahariEiJ_G0020924	Srbd1	98	50.549	ENSMALG00000001562	si:ch211-117n7.8	98	50.949	Monopterus_albus
MGP_PahariEiJ_G0020924	Srbd1	100	95.923	MGP_CAROLIEiJ_G0021934	Srbd1	100	95.923	Mus_caroli
MGP_PahariEiJ_G0020924	Srbd1	100	96.024	ENSMUSG00000024135	Srbd1	100	96.024	Mus_musculus
MGP_PahariEiJ_G0020924	Srbd1	100	96.432	MGP_SPRETEiJ_G0022850	Srbd1	100	96.432	Mus_spretus
MGP_PahariEiJ_G0020924	Srbd1	100	79.618	ENSMLUG00000007039	SRBD1	100	79.618	Myotis_lucifugus
MGP_PahariEiJ_G0020924	Srbd1	100	81.737	ENSNGAG00000011893	Srbd1	100	81.737	Nannospalax_galili
MGP_PahariEiJ_G0020924	Srbd1	91	53.504	ENSNBRG00000012873	si:ch211-117n7.8	99	50.716	Neolamprologus_brichardi
MGP_PahariEiJ_G0020924	Srbd1	100	81.307	ENSNLEG00000016877	SRBD1	100	81.307	Nomascus_leucogenys
MGP_PahariEiJ_G0020924	Srbd1	100	80.711	ENSODEG00000012095	SRBD1	100	80.711	Octodon_degus
MGP_PahariEiJ_G0020924	Srbd1	96	51.825	ENSONIG00000000945	si:ch211-117n7.8	100	57.383	Oreochromis_niloticus
MGP_PahariEiJ_G0020924	Srbd1	100	81.754	ENSOCUG00000015385	SRBD1	100	82.359	Oryctolagus_cuniculus
MGP_PahariEiJ_G0020924	Srbd1	85	52.607	ENSORLG00000004427	si:ch211-117n7.8	83	52.607	Oryzias_latipes
MGP_PahariEiJ_G0020924	Srbd1	98	50.495	ENSORLG00020012792	si:ch211-117n7.8	97	50.495	Oryzias_latipes_hni
MGP_PahariEiJ_G0020924	Srbd1	98	50.446	ENSORLG00015018598	si:ch211-117n7.8	97	50.446	Oryzias_latipes_hsok
MGP_PahariEiJ_G0020924	Srbd1	85	54.865	ENSOMEG00000012229	si:ch211-117n7.8	83	55.334	Oryzias_melastigma
MGP_PahariEiJ_G0020924	Srbd1	100	77.410	ENSOGAG00000001076	SRBD1	100	77.410	Otolemur_garnettii
MGP_PahariEiJ_G0020924	Srbd1	100	75.364	ENSOARG00000005958	SRBD1	100	75.946	Ovis_aries
MGP_PahariEiJ_G0020924	Srbd1	100	81.407	ENSPPAG00000038442	SRBD1	100	81.407	Pan_paniscus
MGP_PahariEiJ_G0020924	Srbd1	100	81.508	ENSPPRG00000003449	SRBD1	100	81.508	Panthera_pardus
MGP_PahariEiJ_G0020924	Srbd1	100	81.608	ENSPTIG00000012495	SRBD1	100	81.608	Panthera_tigris_altaica
MGP_PahariEiJ_G0020924	Srbd1	100	81.407	ENSPTRG00000011889	SRBD1	100	81.407	Pan_troglodytes
MGP_PahariEiJ_G0020924	Srbd1	100	81.307	ENSPANG00000008063	SRBD1	100	81.307	Papio_anubis
MGP_PahariEiJ_G0020924	Srbd1	86	58.747	ENSPKIG00000021973	si:ch211-117n7.8	87	58.747	Paramormyrops_kingsleyae
MGP_PahariEiJ_G0020924	Srbd1	100	70.161	ENSPSIG00000008992	SRBD1	100	70.464	Pelodiscus_sinensis
MGP_PahariEiJ_G0020924	Srbd1	84	55.464	ENSPMGG00000013348	si:ch211-117n7.8	99	51.321	Periophthalmus_magnuspinnatus
MGP_PahariEiJ_G0020924	Srbd1	100	86.382	ENSPEMG00000020684	Srbd1	100	86.382	Peromyscus_maniculatus_bairdii
MGP_PahariEiJ_G0020924	Srbd1	86	56.431	ENSPFOG00000010650	si:ch211-117n7.8	85	56.431	Poecilia_formosa
MGP_PahariEiJ_G0020924	Srbd1	86	56.663	ENSPLAG00000002141	si:ch211-117n7.8	85	56.663	Poecilia_latipinna
MGP_PahariEiJ_G0020924	Srbd1	86	56.547	ENSPMEG00000018537	si:ch211-117n7.8	85	56.547	Poecilia_mexicana
MGP_PahariEiJ_G0020924	Srbd1	85	56.368	ENSPREG00000003258	si:ch211-117n7.8	86	56.368	Poecilia_reticulata
MGP_PahariEiJ_G0020924	Srbd1	100	72.064	ENSPPYG00000012444	SRBD1	99	72.064	Pongo_abelii
MGP_PahariEiJ_G0020924	Srbd1	82	78.849	ENSPCAG00000005629	SRBD1	86	78.849	Procavia_capensis
MGP_PahariEiJ_G0020924	Srbd1	100	69.709	ENSPCOG00000017669	SRBD1	100	69.709	Propithecus_coquereli
MGP_PahariEiJ_G0020924	Srbd1	100	71.457	ENSPVAG00000001782	SRBD1	100	71.457	Pteropus_vampyrus
MGP_PahariEiJ_G0020924	Srbd1	91	51.835	ENSPNYG00000000508	si:ch211-117n7.8	99	49.078	Pundamilia_nyererei
MGP_PahariEiJ_G0020924	Srbd1	85	60.689	ENSPNAG00000013492	SRBD1	85	60.926	Pygocentrus_nattereri
MGP_PahariEiJ_G0020924	Srbd1	100	92.566	ENSRNOG00000014720	Srbd1	99	92.566	Rattus_norvegicus
MGP_PahariEiJ_G0020924	Srbd1	99	81.269	ENSRBIG00000033486	SRBD1	99	81.269	Rhinopithecus_bieti
MGP_PahariEiJ_G0020924	Srbd1	99	81.269	ENSRROG00000041599	SRBD1	99	81.269	Rhinopithecus_roxellana
MGP_PahariEiJ_G0020924	Srbd1	100	81.024	ENSSBOG00000024982	SRBD1	100	81.024	Saimiri_boliviensis_boliviensis
MGP_PahariEiJ_G0020924	Srbd1	89	56.111	ENSSFOG00015001128	si:ch211-117n7.8	97	56.111	Scleropages_formosus
MGP_PahariEiJ_G0020924	Srbd1	85	56.824	ENSSMAG00000018256	si:ch211-117n7.8	83	56.690	Scophthalmus_maximus
MGP_PahariEiJ_G0020924	Srbd1	86	55.825	ENSSLDG00000023189	si:ch211-117n7.8	85	55.825	Seriola_lalandi_dorsalis
MGP_PahariEiJ_G0020924	Srbd1	100	73.529	ENSSARG00000009740	SRBD1	100	73.529	Sorex_araneus
MGP_PahariEiJ_G0020924	Srbd1	85	75.598	ENSSPUG00000010475	SRBD1	94	75.598	Sphenodon_punctatus
MGP_PahariEiJ_G0020924	Srbd1	85	54.245	ENSSPAG00000008092	-	84	54.245	Stegastes_partitus
MGP_PahariEiJ_G0020924	Srbd1	100	81.225	ENSSSCG00000008445	SRBD1	98	81.325	Sus_scrofa
MGP_PahariEiJ_G0020924	Srbd1	84	75.181	ENSTGUG00000003878	SRBD1	100	75.181	Taeniopygia_guttata
MGP_PahariEiJ_G0020924	Srbd1	97	52.148	ENSTRUG00000007080	si:ch211-117n7.8	93	57.059	Takifugu_rubripes
MGP_PahariEiJ_G0020924	Srbd1	98	50.945	ENSTNIG00000007464	si:ch211-117n7.8	97	50.945	Tetraodon_nigroviridis
MGP_PahariEiJ_G0020924	Srbd1	82	95.745	ENSTBEG00000004556	SRBD1	82	95.745	Tupaia_belangeri
MGP_PahariEiJ_G0020924	Srbd1	94	79.944	ENSTTRG00000011871	SRBD1	94	80.780	Tursiops_truncatus
MGP_PahariEiJ_G0020924	Srbd1	100	81.024	ENSUAMG00000008126	SRBD1	100	79.586	Ursus_americanus
MGP_PahariEiJ_G0020924	Srbd1	100	81.124	ENSUMAG00000012902	SRBD1	98	81.124	Ursus_maritimus
MGP_PahariEiJ_G0020924	Srbd1	90	83.352	ENSVPAG00000006825	SRBD1	99	83.352	Vicugna_pacos
MGP_PahariEiJ_G0020924	Srbd1	100	81.426	ENSVVUG00000005389	SRBD1	100	81.526	Vulpes_vulpes
MGP_PahariEiJ_G0020924	Srbd1	100	49.616	ENSXETG00000002760	srbd1	100	50.920	Xenopus_tropicalis
MGP_PahariEiJ_G0020924	Srbd1	90	54.796	ENSXMAG00000016861	si:ch211-117n7.8	89	54.796	Xiphophorus_maculatus